ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 157 - 209 | 4.1e-06 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 216 |
| AccII | CGCG | 1 cut(s) | 116 |
| AciI | CCGC | 3 cut(s) | 114, 224, 542 |
| AclI | AACGTT | 1 cut(s) | 337 |
| AclWI | GGATC | 2 cut(s) | 453, 466 |
| AcsI | RAATTY | 3 cut(s) | 367, 405, 649 |
| AfaI | GTAC | 3 cut(s) | 222, 505, 609 |
| AfeI | AGCGCT | 2 cut(s) | 8, 624 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 136 |
| AflII | CTTAAG | 1 cut(s) | 587 |
| AflIII | ACRYGT | 1 cut(s) | 69 |
| AgsI | TTSAA | 2 cut(s) | 19, 466 |
| AjiI | CACGTC | 1 cut(s) | 145 |
| AleI | CACNNNNGTG | 1 cut(s) | 514 |
| AluBI | AGCT | 2 cut(s) | 413, 479 |
| AluI | AGCT | 2 cut(s) | 413, 479 |
| AlwI | GGATC | 2 cut(s) | 453, 466 |
| Aor51HI | AGCGCT | 2 cut(s) | 8, 624 |
| AoxI | GGCC | 2 cut(s) | 110, 440 |
| ApaI | GGGCCC | 1 cut(s) | 114 |
| ApeKI | GCWGC | 4 cut(s) | 212, 473, 476, 547 |
| ApoI | RAATTY | 3 cut(s) | 367, 405, 649 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 390, 578 |
| AspLEI | GCGC | 5 cut(s) | 9, 118, 184, 217, 625 |
| AspS9I | GGNCC | 4 cut(s) | 110, 111, 193, 497 |
| AsuC2I | CCSGG | 2 cut(s) | 38, 553 |
| AsuHPI | GGTGA | 1 cut(s) | 146 |
| AvaII | GGWCC | 2 cut(s) | 193, 497 |
| BaeGI | GKGCMC | 1 cut(s) | 114 |
| BamHI | GGATCC | 1 cut(s) | 458 |
| BanII | GRGCYC | 2 cut(s) | 43, 114 |
| BbsI | GAAGAC | 2 cut(s) | 321, 393 |
| BbvI | GCAGC | 4 cut(s) | 199, 485, 488, 559 |
| BccI | CCATC | 1 cut(s) | 591 |
| BceAI | ACGGC | 2 cut(s) | 65, 486 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 141, 175 |
| BcnI | CCSGG | 2 cut(s) | 38, 553 |
| BfaI | CTAG | 2 cut(s) | 228, 501 |
| BfmI | CTRYAG | 2 cut(s) | 123, 611 |
| BfoI | RGCGCY | 2 cut(s) | 10, 626 |
| BfrI | CTTAAG | 1 cut(s) | 587 |
| BisI | GCNGC | 4 cut(s) | 213, 474, 477, 548 |
| BlsI | GCNGC | 4 cut(s) | 214, 475, 478, 549 |
| Bme1390I | CCNGG | 2 cut(s) | 38, 553 |
| Bme18I | GGWCC | 2 cut(s) | 193, 497 |
| BmgBI | CACGTC | 1 cut(s) | 145 |
| BmgT120I | GGNCC | 4 cut(s) | 110, 111, 193, 497 |
| BmiI | GGNNCC | 5 cut(s) | 111, 112, 195, 288, 460 |
| BmrFI | CCNGG | 2 cut(s) | 38, 553 |
| BmsI | GCATC | 2 cut(s) | 68, 169 |
| BpiI | GAAGAC | 2 cut(s) | 321, 393 |
| Bpu10I | CCTNAGC | 1 cut(s) | 10 |
| BpuEI | CTTGAG | 3 cut(s) | 289, 383, 533 |
| BpuMI | CCSGG | 2 cut(s) | 38, 553 |
| BsaJI | CCNNGG | 2 cut(s) | 130, 551 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 136 |
| Bse1I | ACTGG | 1 cut(s) | 499 |
| BseDI | CCNNGG | 2 cut(s) | 130, 551 |
| BseGI | GGATG | 2 cut(s) | 184, 430 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 136 |
| BseMII | CTCAG | 2 cut(s) | 24, 640 |
| BseNI | ACTGG | 1 cut(s) | 499 |
| BseSI | GKGCMC | 1 cut(s) | 114 |
| BseXI | GCAGC | 4 cut(s) | 199, 485, 488, 559 |
| BsgI | GTGCAG | 1 cut(s) | 566 |
| Bsh1236I | CGCG | 1 cut(s) | 116 |
| BshFI | GGCC | 2 cut(s) | 112, 442 |
| BsiSI | CCGG | 4 cut(s) | 37, 46, 456, 553 |
| BslFI | GGGAC | 1 cut(s) | 179 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 136 |
| BsmFI | GGGAC | 1 cut(s) | 179 |
| BsnI | GGCC | 2 cut(s) | 112, 442 |
| Bsp120I | GGGCCC | 1 cut(s) | 110 |
| Bsp1286I | GDGCHC | 2 cut(s) | 43, 114 |
| Bsp143I | GATC | 2 cut(s) | 458, 591 |
| BspACI | CCGC | 3 cut(s) | 114, 224, 542 |
| BspANI | GGCC | 2 cut(s) | 112, 442 |
| BspCNI | CTCAG | 2 cut(s) | 23, 639 |
| BspFNI | CGCG | 1 cut(s) | 116 |
| BspLI | GGNNCC | 5 cut(s) | 111, 112, 195, 288, 460 |
| BspMAI | CTGCAG | 1 cut(s) | 615 |
| BspPI | GGATC | 2 cut(s) | 453, 466 |
| BspQI | GCTCTTC | 1 cut(s) | 613 |
| BspTI | CTTAAG | 1 cut(s) | 587 |
| BsrI | ACTGG | 1 cut(s) | 499 |
| BssECI | CCNNGG | 2 cut(s) | 130, 551 |
| BssMI | GATC | 2 cut(s) | 458, 591 |
| Bst4CI | ACNGT | 3 cut(s) | 124, 280, 318 |
| Bst6I | CTCTTC | 2 cut(s) | 99, 613 |
| BstAFI | CTTAAG | 1 cut(s) | 587 |
| BstC8I | GCNNGC | 6 cut(s) | 43, 57, 114, 165, 210, 240 |
| BstDEI | CTNAG | 2 cut(s) | 10, 626 |
| BstDSI | CCRYGG | 1 cut(s) | 130 |
| BstF5I | GGATG | 2 cut(s) | 184, 430 |
| BstFNI | CGCG | 1 cut(s) | 116 |
| BstH2I | RGCGCY | 2 cut(s) | 10, 626 |
| BstHHI | GCGC | 5 cut(s) | 9, 118, 184, 217, 625 |
| BstKTI | GATC | 2 cut(s) | 461, 594 |
| BstMBI | GATC | 2 cut(s) | 458, 591 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 42, 214, 223, 239 |
| BstNSI | RCATGY | 4 cut(s) | 59, 167, 212, 221 |
| BstSCI | CCNGG | 2 cut(s) | 36, 551 |
| BstSFI | CTRYAG | 2 cut(s) | 123, 611 |
| BstSLI | GKGCMC | 1 cut(s) | 114 |
| BstUI | CGCG | 1 cut(s) | 116 |
| BstV1I | GCAGC | 4 cut(s) | 199, 485, 488, 559 |
| BstV2I | GAAGAC | 2 cut(s) | 321, 393 |
| BstX2I | RGATCY | 1 cut(s) | 458 |
| BstYI | RGATCY | 1 cut(s) | 458 |
| BsuRI | GGCC | 2 cut(s) | 112, 442 |
| BtgI | CCRYGG | 1 cut(s) | 130 |
| BtrI | CACGTC | 1 cut(s) | 145 |
| BtsCI | GGATG | 2 cut(s) | 184, 430 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 120, 492 |
| Cac8I | GCNNGC | 6 cut(s) | 43, 57, 114, 165, 210, 240 |
| CfoI | GCGC | 5 cut(s) | 9, 118, 184, 217, 625 |
| Cfr13I | GGNCC | 4 cut(s) | 110, 111, 193, 497 |
| Csp6I | GTAC | 3 cut(s) | 221, 504, 608 |
| CviAII | CATG | 6 cut(s) | 56, 164, 209, 218, 421, 595 |
| CviQI | GTAC | 3 cut(s) | 221, 504, 608 |
| DdeI | CTNAG | 2 cut(s) | 10, 626 |
| DpnI | GATC | 2 cut(s) | 460, 593 |
| DpnII | GATC | 2 cut(s) | 458, 591 |
| Eam1104I | CTCTTC | 2 cut(s) | 99, 613 |
| EarI | CTCTTC | 2 cut(s) | 99, 613 |
| Eco24I | GRGCYC | 2 cut(s) | 43, 114 |
| Eco47I | GGWCC | 2 cut(s) | 193, 497 |
| Eco47III | AGCGCT | 2 cut(s) | 8, 624 |
| EcoO109I | RGGNCCY | 1 cut(s) | 110 |
| EcoT22I | ATGCAT | 1 cut(s) | 61 |
| EcoT38I | GRGCYC | 2 cut(s) | 43, 114 |
| FaeI | CATG | 6 cut(s) | 59, 167, 212, 221, 424, 598 |
| FaiI | YATR | 8 cut(s) | 57, 165, 191, 210, 219, 422, 568, 596 |
| FaqI | GGGAC | 1 cut(s) | 179 |
| FatI | CATG | 6 cut(s) | 55, 163, 208, 217, 420, 594 |
| FauI | CCCGC | 1 cut(s) | 121 |
| Fnu4HI | GCNGC | 4 cut(s) | 213, 474, 477, 548 |
| FokI | GGATG | 2 cut(s) | 191, 437 |
| FriOI | GRGCYC | 2 cut(s) | 43, 114 |
| Fsp4HI | GCNGC | 4 cut(s) | 213, 474, 477, 548 |
| FspBI | CTAG | 2 cut(s) | 228, 501 |
| FspI | TGCGCA | 1 cut(s) | 216 |
| GlaI | GCGC | 5 cut(s) | 8, 117, 183, 216, 624 |
| GluI | GCNGC | 4 cut(s) | 213, 474, 477, 548 |
| HaeII | RGCGCY | 2 cut(s) | 10, 626 |
| HaeIII | GGCC | 2 cut(s) | 112, 442 |
| HapII | CCGG | 4 cut(s) | 37, 46, 456, 553 |
| HhaI | GCGC | 5 cut(s) | 9, 118, 184, 217, 625 |
| Hin1II | CATG | 6 cut(s) | 59, 167, 212, 221, 424, 598 |
| Hin6I | GCGC | 5 cut(s) | 7, 116, 182, 215, 623 |
| HinP1I | GCGC | 5 cut(s) | 7, 116, 182, 215, 623 |
| HincII | GTYRAC | 1 cut(s) | 601 |
| HindII | GTYRAC | 1 cut(s) | 601 |
| HinfI | GANTC | 2 cut(s) | 158, 260 |
| HpaII | CCGG | 4 cut(s) | 37, 46, 456, 553 |
| HphI | GGTGA | 1 cut(s) | 146 |
| Hpy166II | GTNNAC | 1 cut(s) | 601 |
| Hpy188I | TCNGA | 1 cut(s) | 385 |
| Hpy188III | TCNNGA | 1 cut(s) | 374 |
| Hpy8I | GTNNAC | 1 cut(s) | 601 |
| HpyAV | CCTTC | 2 cut(s) | 207, 568 |
| HpyCH4III | ACNGT | 3 cut(s) | 124, 280, 318 |
| HpyCH4IV | ACGT | 3 cut(s) | 71, 144, 337 |
| HpyCH4V | TGCA | 6 cut(s) | 59, 98, 167, 208, 547, 613 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 42, 214, 223, 239 |
| HpyF3I | CTNAG | 2 cut(s) | 10, 626 |
| HpySE526I | ACGT | 3 cut(s) | 71, 144, 337 |
| Hsp92II | CATG | 6 cut(s) | 59, 167, 212, 221, 424, 598 |
| HspAI | GCGC | 5 cut(s) | 7, 116, 182, 215, 623 |
| Kzo9I | GATC | 2 cut(s) | 458, 591 |
| LguI | GCTCTTC | 1 cut(s) | 613 |
| LmnI | GCTCC | 2 cut(s) | 4, 286 |
| Lsp1109I | GCAGC | 4 cut(s) | 199, 485, 488, 559 |
| LweI | GCATC | 2 cut(s) | 68, 169 |
| MaeI | CTAG | 2 cut(s) | 228, 501 |
| MaeII | ACGT | 3 cut(s) | 71, 144, 337 |
| MalI | GATC | 2 cut(s) | 460, 593 |
| MboI | GATC | 2 cut(s) | 458, 591 |
| MboII | GAAGA | 5 cut(s) | 116, 315, 321, 398, 630 |
| MflI | RGATCY | 1 cut(s) | 458 |
| MhlI | GDGCHC | 2 cut(s) | 43, 114 |
| MluCI | AATT | 3 cut(s) | 367, 405, 649 |
| MlyI | GAGTC | 2 cut(s) | 167, 269 |
| MmeI | TCCRAC | 2 cut(s) | 551, 611 |
| MnlI | CCTC | 4 cut(s) | 100, 130, 460, 598 |
| Mph1103I | ATGCAT | 1 cut(s) | 61 |
| MroXI | GAANNNNTTC | 2 cut(s) | 390, 578 |
| MseI | TTAA | 2 cut(s) | 588, 636 |
| MslI | CAYNNNNRTG | 1 cut(s) | 514 |
| MspCI | CTTAAG | 1 cut(s) | 587 |
| MspI | CCGG | 4 cut(s) | 37, 46, 456, 553 |
| MspR9I | CCNGG | 2 cut(s) | 38, 553 |
| MvnI | CGCG | 1 cut(s) | 116 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 42, 214, 223, 239 |
| NciI | CCSGG | 2 cut(s) | 38, 553 |
| NdeII | GATC | 2 cut(s) | 458, 591 |
| NlaIII | CATG | 6 cut(s) | 59, 167, 212, 221, 424, 598 |
| NlaIV | GGNNCC | 5 cut(s) | 111, 112, 195, 288, 460 |
| NsbI | TGCGCA | 1 cut(s) | 216 |
| NsiI | ATGCAT | 1 cut(s) | 61 |
| NspI | RCATGY | 4 cut(s) | 59, 167, 212, 221 |
| OliI | CACNNNNGTG | 1 cut(s) | 514 |
| PaeI | GCATGC | 3 cut(s) | 59, 167, 212 |
| PciSI | GCTCTTC | 1 cut(s) | 613 |
| PdmI | GAANNNNTTC | 2 cut(s) | 390, 578 |
| PflFI | GACNNNGTC | 1 cut(s) | 431 |
| PkrI | GCNGC | 4 cut(s) | 214, 475, 478, 549 |
| PleI | GAGTC | 2 cut(s) | 166, 268 |
| PpsI | GAGTC | 2 cut(s) | 166, 268 |
| Psp1406I | AACGTT | 1 cut(s) | 337 |
| PspN4I | GGNNCC | 5 cut(s) | 111, 112, 195, 288, 460 |
| PspOMI | GGGCCC | 1 cut(s) | 110 |
| PspPI | GGNCC | 4 cut(s) | 110, 111, 193, 497 |
| PstI | CTGCAG | 1 cut(s) | 615 |
| PsuI | RGATCY | 1 cut(s) | 458 |
| PsyI | GACNNNGTC | 1 cut(s) | 431 |
| RsaI | GTAC | 3 cut(s) | 222, 505, 609 |
| RsaNI | GTAC | 3 cut(s) | 221, 504, 608 |
| RseI | CAYNNNNRTG | 1 cut(s) | 514 |
| SapI | GCTCTTC | 1 cut(s) | 613 |
| SaqAI | TTAA | 2 cut(s) | 588, 636 |
| SatI | GCNGC | 4 cut(s) | 213, 474, 477, 548 |
| Sau3AI | GATC | 2 cut(s) | 458, 591 |
| Sau96I | GGNCC | 4 cut(s) | 110, 111, 193, 497 |
| SchI | GAGTC | 2 cut(s) | 167, 269 |
| ScrFI | CCNGG | 2 cut(s) | 38, 553 |
| SduI | GDGCHC | 2 cut(s) | 43, 114 |
| SetI | ASST | 9 cut(s) | 16, 74, 147, 340, 415, 452, 481, 579, 609 |
| SfaNI | GCATC | 2 cut(s) | 68, 169 |
| SfcI | CTRYAG | 2 cut(s) | 123, 611 |
| SinI | GGWCC | 2 cut(s) | 193, 497 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 514 |
| SmlI | CTYRAG | 4 cut(s) | 268, 362, 512, 587 |
| SmoI | CTYRAG | 4 cut(s) | 268, 362, 512, 587 |
| SphI | GCATGC | 3 cut(s) | 59, 167, 212 |
| Sse9I | AATT | 3 cut(s) | 367, 405, 649 |
| SsiI | CCGC | 3 cut(s) | 114, 224, 542 |
| SspMI | CTAG | 2 cut(s) | 228, 501 |
| StyD4I | CCNGG | 2 cut(s) | 36, 551 |
| TaaI | ACNGT | 3 cut(s) | 124, 280, 318 |
| TaiI | ACGT | 3 cut(s) | 74, 147, 340 |
| TasI | AATT | 3 cut(s) | 367, 405, 649 |
| TatI | WGTACW | 1 cut(s) | 503 |
| Tru1I | TTAA | 2 cut(s) | 588, 636 |
| Tru9I | TTAA | 2 cut(s) | 588, 636 |
| TscAI | CASTG | 3 cut(s) | 105, 127, 499 |
| TseI | GCWGC | 4 cut(s) | 212, 473, 476, 547 |
| TspRI | CASTG | 3 cut(s) | 105, 127, 499 |
| Tth111I | GACNNNGTC | 1 cut(s) | 431 |
| Vha464I | CTTAAG | 1 cut(s) | 587 |
| VpaK11BI | GGWCC | 2 cut(s) | 193, 497 |
| XapI | RAATTY | 3 cut(s) | 367, 405, 649 |
| XceI | RCATGY | 4 cut(s) | 59, 167, 212, 221 |
| XmnI | GAANNNNTTC | 2 cut(s) | 390, 578 |
| XspI | CTAG | 2 cut(s) | 228, 501 |
| Zsp2I | ATGCAT | 1 cut(s) | 61 |