ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 182 |
| AciI | CCGC | 1 cut(s) | 1040 |
| AclWI | GGATC | 1 cut(s) | 192 |
| AcyI | GRCGYC | 1 cut(s) | 19 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 207 |
| AflIII | ACRYGT | 2 cut(s) | 471, 828 |
| AgsI | TTSAA | 7 cut(s) | 163, 356, 520, 549, 602, 944, 997 |
| AjiI | CACGTC | 1 cut(s) | 829 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 966, 998 |
| AluBI | AGCT | 6 cut(s) | 14, 152, 178, 524, 842, 877 |
| AluI | AGCT | 6 cut(s) | 14, 152, 178, 524, 842, 877 |
| Alw21I | GWGCWC | 4 cut(s) | 88, 117, 154, 369 |
| Alw26I | GTCTC | 1 cut(s) | 221 |
| Alw44I | GTGCAC | 1 cut(s) | 365 |
| AlwI | GGATC | 1 cut(s) | 192 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1088 |
| AoxI | GGCC | 1 cut(s) | 230 |
| ApaLI | GTGCAC | 1 cut(s) | 365 |
| ApeKI | GCWGC | 1 cut(s) | 934 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 818, 850 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 171 |
| AsuHPI | GGTGA | 1 cut(s) | 320 |
| AxyI | CCTNAGG | 2 cut(s) | 36, 508 |
| BaeGI | GKGCMC | 1 cut(s) | 369 |
| BanII | GRGCYC | 1 cut(s) | 154 |
| BauI | CACGAG | 1 cut(s) | 368 |
| BbsI | GAAGAC | 1 cut(s) | 474 |
| Bbv12I | GWGCWC | 4 cut(s) | 88, 117, 154, 369 |
| BbvI | GCAGC | 1 cut(s) | 921 |
| BccI | CCATC | 3 cut(s) | 263, 697, 1029 |
| BceAI | ACGGC | 1 cut(s) | 686 |
| BcoDI | GTCTC | 1 cut(s) | 221 |
| BfaI | CTAG | 2 cut(s) | 293, 924 |
| BisI | GCNGC | 1 cut(s) | 935 |
| BlsI | GCNGC | 1 cut(s) | 936 |
| BmgBI | CACGTC | 1 cut(s) | 829 |
| BmrI | ACTGGG | 2 cut(s) | 400, 1089 |
| BmsI | GCATC | 4 cut(s) | 135, 649, 742, 874 |
| BmuI | ACTGGG | 2 cut(s) | 400, 1089 |
| BpiI | GAAGAC | 1 cut(s) | 474 |
| Bpu10I | CCTNAGC | 2 cut(s) | 525, 861 |
| BpuEI | CTTGAG | 3 cut(s) | 411, 738, 842 |
| BsaAI | YACGTR | 1 cut(s) | 62 |
| BsaBI | GATNNNNATC | 1 cut(s) | 732 |
| BsaHI | GRCGYC | 1 cut(s) | 19 |
| BsaI | GGTCTC | 1 cut(s) | 221 |
| BsaJI | CCNNGG | 2 cut(s) | 360, 809 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 831, 861 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 207 |
| Bse1I | ACTGG | 2 cut(s) | 395, 1095 |
| Bse21I | CCTNAGG | 2 cut(s) | 36, 508 |
| Bse8I | GATNNNNATC | 1 cut(s) | 732 |
| BseDI | CCNNGG | 2 cut(s) | 360, 809 |
| BseGI | GGATG | 3 cut(s) | 274, 500, 1021 |
| BseJI | GATNNNNATC | 1 cut(s) | 732 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 207 |
| BseMII | CTCAG | 3 cut(s) | 216, 522, 977 |
| BseNI | ACTGG | 2 cut(s) | 395, 1095 |
| BseRI | GAGGAG | 1 cut(s) | 496 |
| BseSI | GKGCMC | 1 cut(s) | 369 |
| BseXI | GCAGC | 1 cut(s) | 921 |
| BseYI | CCCAGC | 1 cut(s) | 304 |
| BshFI | GGCC | 1 cut(s) | 232 |
| BsiHKAI | GWGCWC | 4 cut(s) | 88, 117, 154, 369 |
| BsiSI | CCGG | 2 cut(s) | 131, 401 |
| BslFI | GGGAC | 2 cut(s) | 69, 602 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 207 |
| BsmAI | GTCTC | 1 cut(s) | 221 |
| BsmFI | GGGAC | 2 cut(s) | 69, 602 |
| BsmI | GAATGC | 2 cut(s) | 820, 1012 |
| BsnI | GGCC | 1 cut(s) | 232 |
| Bso31I | GGTCTC | 1 cut(s) | 221 |
| Bsp1286I | GDGCHC | 4 cut(s) | 88, 117, 154, 369 |
| Bsp143I | GATC | 3 cut(s) | 64, 197, 559 |
| BspACI | CCGC | 1 cut(s) | 1040 |
| BspANI | GGCC | 1 cut(s) | 232 |
| BspCNI | CTCAG | 3 cut(s) | 215, 521, 978 |
| BspPI | GGATC | 1 cut(s) | 192 |
| BspQI | GCTCTTC | 2 cut(s) | 93, 639 |
| BspTNI | GGTCTC | 1 cut(s) | 221 |
| BsrI | ACTGG | 2 cut(s) | 395, 1095 |
| BssECI | CCNNGG | 2 cut(s) | 360, 809 |
| BssMI | GATC | 3 cut(s) | 64, 197, 559 |
| BssNI | GRCGYC | 1 cut(s) | 19 |
| BssSI | CACGAG | 1 cut(s) | 368 |
| BssT1I | CCWWGG | 2 cut(s) | 360, 809 |
| Bst2BI | CACGAG | 1 cut(s) | 368 |
| Bst6I | CTCTTC | 4 cut(s) | 93, 124, 357, 639 |
| BstACI | GRCGYC | 1 cut(s) | 19 |
| BstBAI | YACGTR | 1 cut(s) | 62 |
| BstC8I | GCNNGC | 1 cut(s) | 150 |
| BstDEI | CTNAG | 6 cut(s) | 36, 202, 508, 525, 861, 986 |
| BstF5I | GGATG | 3 cut(s) | 274, 500, 1021 |
| BstKTI | GATC | 3 cut(s) | 67, 200, 562 |
| BstMAI | GTCTC | 1 cut(s) | 221 |
| BstMBI | GATC | 3 cut(s) | 64, 197, 559 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 83, 310, 530 |
| BstNSI | RCATGY | 2 cut(s) | 475, 1040 |
| BstSLI | GKGCMC | 1 cut(s) | 369 |
| BstV1I | GCAGC | 1 cut(s) | 921 |
| BstV2I | GAAGAC | 1 cut(s) | 474 |
| BstX2I | RGATCY | 1 cut(s) | 197 |
| BstYI | RGATCY | 1 cut(s) | 197 |
| Bsu36I | CCTNAGG | 2 cut(s) | 36, 508 |
| BsuRI | GGCC | 1 cut(s) | 232 |
| BtrI | CACGTC | 1 cut(s) | 829 |
| BtsCI | GGATG | 3 cut(s) | 274, 500, 1021 |
| BtsI | GCAGTG | 1 cut(s) | 1086 |
| BtsIMutI | CAGTG | 2 cut(s) | 388, 1086 |
| Cac8I | GCNNGC | 1 cut(s) | 150 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1088 |
| CseI | GACGC | 2 cut(s) | 8, 860 |
| CviAII | CATG | 6 cut(s) | 472, 606, 638, 716, 1037, 1107 |
| DdeI | CTNAG | 6 cut(s) | 36, 202, 508, 525, 861, 986 |
| DpnI | GATC | 3 cut(s) | 66, 199, 561 |
| DpnII | GATC | 3 cut(s) | 64, 197, 559 |
| Eam1104I | CTCTTC | 4 cut(s) | 93, 124, 357, 639 |
| EarI | CTCTTC | 4 cut(s) | 93, 124, 357, 639 |
| Ecl136II | GAGCTC | 1 cut(s) | 152 |
| Eco130I | CCWWGG | 2 cut(s) | 360, 809 |
| Eco24I | GRGCYC | 1 cut(s) | 154 |
| Eco31I | GGTCTC | 1 cut(s) | 221 |
| Eco53kI | GAGCTC | 1 cut(s) | 152 |
| Eco81I | CCTNAGG | 2 cut(s) | 36, 508 |
| EcoICRI | GAGCTC | 1 cut(s) | 152 |
| EcoT14I | CCWWGG | 2 cut(s) | 360, 809 |
| EcoT22I | ATGCAT | 1 cut(s) | 1014 |
| EcoT38I | GRGCYC | 1 cut(s) | 154 |
| ErhI | CCWWGG | 2 cut(s) | 360, 809 |
| FaeI | CATG | 6 cut(s) | 475, 609, 641, 719, 1040, 1110 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 518, 550 |
| FaqI | GGGAC | 2 cut(s) | 69, 602 |
| FatI | CATG | 6 cut(s) | 471, 605, 637, 715, 1036, 1106 |
| Fnu4HI | GCNGC | 1 cut(s) | 935 |
| FokI | GGATG | 3 cut(s) | 281, 487, 1008 |
| FriOI | GRGCYC | 1 cut(s) | 154 |
| Fsp4HI | GCNGC | 1 cut(s) | 935 |
| FspBI | CTAG | 2 cut(s) | 293, 924 |
| GluI | GCNGC | 1 cut(s) | 935 |
| GsaI | CCCAGC | 1 cut(s) | 308 |
| HaeIII | GGCC | 1 cut(s) | 232 |
| HapII | CCGG | 2 cut(s) | 131, 401 |
| HgaI | GACGC | 2 cut(s) | 8, 860 |
| Hin1I | GRCGYC | 1 cut(s) | 19 |
| Hin1II | CATG | 6 cut(s) | 475, 609, 641, 719, 1040, 1110 |
| HinfI | GANTC | 5 cut(s) | 79, 383, 722, 928, 1001 |
| HpaII | CCGG | 2 cut(s) | 131, 401 |
| HphI | GGTGA | 1 cut(s) | 320 |
| Hpy166II | GTNNAC | 2 cut(s) | 32, 367 |
| Hpy188I | TCNGA | 3 cut(s) | 478, 727, 987 |
| Hpy188III | TCNNGA | 4 cut(s) | 142, 495, 510, 821 |
| Hpy8I | GTNNAC | 2 cut(s) | 32, 367 |
| Hpy99I | CGWCG | 1 cut(s) | 567 |
| HpyAV | CCTTC | 6 cut(s) | 38, 157, 622, 794, 938, 1027 |
| HpyCH4IV | ACGT | 4 cut(s) | 61, 828, 976, 1044 |
| HpyCH4V | TGCA | 6 cut(s) | 367, 434, 609, 733, 897, 1012 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 83, 310, 530 |
| HpyF3I | CTNAG | 6 cut(s) | 36, 202, 508, 525, 861, 986 |
| HpySE526I | ACGT | 4 cut(s) | 61, 828, 976, 1044 |
| Hsp92I | GRCGYC | 1 cut(s) | 19 |
| Hsp92II | CATG | 6 cut(s) | 475, 609, 641, 719, 1040, 1110 |
| Kzo9I | GATC | 3 cut(s) | 64, 197, 559 |
| LguI | GCTCTTC | 2 cut(s) | 93, 639 |
| LmnI | GCTCC | 2 cut(s) | 839, 1096 |
| Lsp1109I | GCAGC | 1 cut(s) | 921 |
| LweI | GCATC | 4 cut(s) | 135, 649, 742, 874 |
| MaeI | CTAG | 2 cut(s) | 293, 924 |
| MaeII | ACGT | 4 cut(s) | 61, 828, 976, 1044 |
| MaeIII | GTNAC | 1 cut(s) | 889 |
| MalI | GATC | 3 cut(s) | 66, 199, 561 |
| MboI | GATC | 3 cut(s) | 64, 197, 559 |
| MfeI | CAATTG | 1 cut(s) | 1076 |
| MflI | RGATCY | 1 cut(s) | 197 |
| MhlI | GDGCHC | 4 cut(s) | 88, 117, 154, 369 |
| MluCI | AATT | 8 cut(s) | 244, 298, 450, 568, 597, 903, 1076, 1114 |
| MlyI | GAGTC | 2 cut(s) | 731, 1010 |
| Mph1103I | ATGCAT | 1 cut(s) | 1014 |
| MroXI | GAANNNNTTC | 1 cut(s) | 171 |
| MseI | TTAA | 5 cut(s) | 243, 576, 957, 1113, 1120 |
| MslI | CAYNNNNRTG | 1 cut(s) | 253 |
| MspI | CCGG | 2 cut(s) | 131, 401 |
| MunI | CAATTG | 1 cut(s) | 1076 |
| Mva1269I | GAATGC | 2 cut(s) | 820, 1012 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 83, 310, 530 |
| NdeII | GATC | 3 cut(s) | 64, 197, 559 |
| NlaIII | CATG | 6 cut(s) | 475, 609, 641, 719, 1040, 1110 |
| NmeAIII | GCCGAG | 1 cut(s) | 745 |
| NsiI | ATGCAT | 1 cut(s) | 1014 |
| NspI | RCATGY | 2 cut(s) | 475, 1040 |
| PciI | ACATGT | 1 cut(s) | 471 |
| PciSI | GCTCTTC | 2 cut(s) | 93, 639 |
| PctI | GAATGC | 2 cut(s) | 820, 1012 |
| PdmI | GAANNNNTTC | 1 cut(s) | 171 |
| PfeI | GAWTC | 3 cut(s) | 79, 383, 928 |
| PkrI | GCNGC | 1 cut(s) | 936 |
| PleI | GAGTC | 2 cut(s) | 730, 1009 |
| PpsI | GAGTC | 2 cut(s) | 730, 1009 |
| Ppu21I | YACGTR | 1 cut(s) | 62 |
| PscI | ACATGT | 1 cut(s) | 471 |
| PsiI | TTATAA | 1 cut(s) | 182 |
| Psp124BI | GAGCTC | 1 cut(s) | 154 |
| PspFI | CCCAGC | 1 cut(s) | 304 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1088 |
| PsuI | RGATCY | 1 cut(s) | 197 |
| RseI | CAYNNNNRTG | 1 cut(s) | 253 |
| SacI | GAGCTC | 1 cut(s) | 154 |
| SapI | GCTCTTC | 2 cut(s) | 93, 639 |
| SaqAI | TTAA | 5 cut(s) | 243, 576, 957, 1113, 1120 |
| SatI | GCNGC | 1 cut(s) | 935 |
| Sau3AI | GATC | 3 cut(s) | 64, 197, 559 |
| SchI | GAGTC | 2 cut(s) | 731, 1010 |
| SduI | GDGCHC | 4 cut(s) | 88, 117, 154, 369 |
| SfaNI | GCATC | 4 cut(s) | 135, 649, 742, 874 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 253 |
| SmlI | CTYRAG | 3 cut(s) | 426, 753, 821 |
| SmoI | CTYRAG | 3 cut(s) | 426, 753, 821 |
| Sse9I | AATT | 8 cut(s) | 244, 298, 450, 568, 597, 903, 1076, 1114 |
| SsiI | CCGC | 1 cut(s) | 1040 |
| SspMI | CTAG | 2 cut(s) | 293, 924 |
| SstI | GAGCTC | 1 cut(s) | 154 |
| StyI | CCWWGG | 2 cut(s) | 360, 809 |
| TaiI | ACGT | 4 cut(s) | 64, 831, 979, 1047 |
| TaqI | TCGA | 2 cut(s) | 154, 565 |
| TasI | AATT | 8 cut(s) | 244, 298, 450, 568, 597, 903, 1076, 1114 |
| TfiI | GAWTC | 3 cut(s) | 79, 383, 928 |
| Tru1I | TTAA | 5 cut(s) | 243, 576, 957, 1113, 1120 |
| Tru9I | TTAA | 5 cut(s) | 243, 576, 957, 1113, 1120 |
| TscAI | CASTG | 2 cut(s) | 395, 1093 |
| TseI | GCWGC | 1 cut(s) | 934 |
| TspDTI | ATGAA | 3 cut(s) | 408, 626, 1090 |
| TspRI | CASTG | 2 cut(s) | 395, 1093 |
| VneI | GTGCAC | 1 cut(s) | 365 |
| XceI | RCATGY | 2 cut(s) | 475, 1040 |
| XmnI | GAANNNNTTC | 1 cut(s) | 171 |
| XspI | CTAG | 2 cut(s) | 293, 924 |
| Zsp2I | ATGCAT | 1 cut(s) | 1014 |