ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 524 |
| AccIII | TCCGGA | 1 cut(s) | 577 |
| AciI | CCGC | 3 cut(s) | 389, 522, 524 |
| AclWI | GGATC | 4 cut(s) | 399, 551, 564, 633 |
| AcsI | RAATTY | 3 cut(s) | 103, 320, 455 |
| AcvI | CACGTG | 1 cut(s) | 119 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 232 |
| AgsI | TTSAA | 3 cut(s) | 52, 109, 140 |
| AjnI | CCWGG | 2 cut(s) | 571, 589 |
| AluBI | AGCT | 2 cut(s) | 152, 477 |
| AluI | AGCT | 2 cut(s) | 152, 477 |
| Alw26I | GTCTC | 1 cut(s) | 487 |
| AlwI | GGATC | 4 cut(s) | 399, 551, 564, 633 |
| Ama87I | CYCGRG | 1 cut(s) | 428 |
| Aor13HI | TCCGGA | 1 cut(s) | 577 |
| ApeKI | GCWGC | 1 cut(s) | 203 |
| ApoI | RAATTY | 3 cut(s) | 103, 320, 455 |
| AseI | ATTAAT | 1 cut(s) | 339 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 459 |
| AspS9I | GGNCC | 2 cut(s) | 425, 575 |
| AsuC2I | CCSGG | 2 cut(s) | 429, 430 |
| AsuHPI | GGTGA | 1 cut(s) | 290 |
| AvaI | CYCGRG | 1 cut(s) | 428 |
| AvaII | GGWCC | 2 cut(s) | 425, 575 |
| BamHI | GGATCC | 1 cut(s) | 556 |
| BbrPI | CACGTG | 1 cut(s) | 119 |
| BbvI | GCAGC | 1 cut(s) | 190 |
| BccI | CCATC | 2 cut(s) | 152, 575 |
| BciT130I | CCWGG | 2 cut(s) | 573, 591 |
| BcnI | CCSGG | 2 cut(s) | 429, 430 |
| BcoDI | GTCTC | 1 cut(s) | 487 |
| BfaI | CTAG | 4 cut(s) | 57, 474, 506, 564 |
| BfmI | CTRYAG | 1 cut(s) | 204 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 128 |
| BisI | GCNGC | 1 cut(s) | 204 |
| BlsI | GCNGC | 1 cut(s) | 205 |
| Bme1390I | CCNGG | 4 cut(s) | 429, 430, 573, 591 |
| Bme18I | GGWCC | 2 cut(s) | 425, 575 |
| BmeT110I | CYCGRG | 1 cut(s) | 428 |
| BmgT120I | GGNCC | 2 cut(s) | 425, 575 |
| BmiI | GGNNCC | 2 cut(s) | 427, 558 |
| BmrFI | CCNGG | 4 cut(s) | 429, 430, 573, 591 |
| BpmI | CTGGAG | 1 cut(s) | 262 |
| Bpu10I | CCTNAGC | 1 cut(s) | 198 |
| BpuEI | CTTGAG | 1 cut(s) | 233 |
| BpuMI | CCSGG | 2 cut(s) | 429, 430 |
| BsaAI | YACGTR | 1 cut(s) | 119 |
| BsaJI | CCNNGG | 3 cut(s) | 428, 429, 522 |
| BsaWI | WCCGGW | 1 cut(s) | 577 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 232 |
| BseAI | TCCGGA | 1 cut(s) | 577 |
| BseBI | CCWGG | 2 cut(s) | 573, 591 |
| BseDI | CCNNGG | 3 cut(s) | 428, 429, 522 |
| BseGI | GGATG | 2 cut(s) | 532, 586 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 232 |
| BseMII | CTCAG | 1 cut(s) | 363 |
| BseRI | GAGGAG | 1 cut(s) | 356 |
| BseXI | GCAGC | 1 cut(s) | 190 |
| BseYI | CCCAGC | 1 cut(s) | 612 |
| BsgI | GTGCAG | 1 cut(s) | 561 |
| Bsh1236I | CGCG | 1 cut(s) | 524 |
| BsiHKCI | CYCGRG | 1 cut(s) | 428 |
| BsiSI | CCGG | 2 cut(s) | 429, 578 |
| BslFI | GGGAC | 1 cut(s) | 411 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 232 |
| BsmAI | GTCTC | 1 cut(s) | 487 |
| BsmFI | GGGAC | 1 cut(s) | 411 |
| BsmI | GAATGC | 1 cut(s) | 236 |
| BsoBI | CYCGRG | 1 cut(s) | 428 |
| Bsp13I | TCCGGA | 1 cut(s) | 577 |
| Bsp143I | GATC | 3 cut(s) | 391, 556, 625 |
| BspACI | CCGC | 3 cut(s) | 389, 522, 524 |
| BspCNI | CTCAG | 1 cut(s) | 364 |
| BspEI | TCCGGA | 1 cut(s) | 577 |
| BspFNI | CGCG | 1 cut(s) | 524 |
| BspLI | GGNNCC | 2 cut(s) | 427, 558 |
| BspMAI | CTGCAG | 1 cut(s) | 208 |
| BspPI | GGATC | 4 cut(s) | 399, 551, 564, 633 |
| BspQI | GCTCTTC | 1 cut(s) | 295 |
| BssECI | CCNNGG | 3 cut(s) | 428, 429, 522 |
| BssMI | GATC | 3 cut(s) | 391, 556, 625 |
| Bst2UI | CCWGG | 2 cut(s) | 573, 591 |
| Bst4CI | ACNGT | 1 cut(s) | 82 |
| Bst6I | CTCTTC | 1 cut(s) | 295 |
| BstBAI | YACGTR | 1 cut(s) | 119 |
| BstDEI | CTNAG | 3 cut(s) | 198, 372, 478 |
| BstDSI | CCRYGG | 1 cut(s) | 522 |
| BstF5I | GGATG | 2 cut(s) | 532, 586 |
| BstFNI | CGCG | 1 cut(s) | 524 |
| BstKTI | GATC | 3 cut(s) | 394, 559, 628 |
| BstMAI | GTCTC | 1 cut(s) | 487 |
| BstMBI | GATC | 3 cut(s) | 391, 556, 625 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 128, 203 |
| BstNI | CCWGG | 2 cut(s) | 573, 591 |
| BstSCI | CCNGG | 4 cut(s) | 427, 428, 571, 589 |
| BstSFI | CTRYAG | 1 cut(s) | 204 |
| BstUI | CGCG | 1 cut(s) | 524 |
| BstV1I | GCAGC | 1 cut(s) | 190 |
| BstX2I | RGATCY | 1 cut(s) | 556 |
| BstYI | RGATCY | 1 cut(s) | 556 |
| BtgI | CCRYGG | 1 cut(s) | 522 |
| BtsCI | GGATG | 2 cut(s) | 532, 586 |
| BtsIMutI | CAGTG | 1 cut(s) | 78 |
| Cfr13I | GGNCC | 2 cut(s) | 425, 575 |
| Cfr42I | CCGCGG | 1 cut(s) | 525 |
| Cfr9I | CCCGGG | 1 cut(s) | 428 |
| CviAII | CATG | 2 cut(s) | 302, 395 |
| DdeI | CTNAG | 3 cut(s) | 198, 372, 478 |
| DpnI | GATC | 3 cut(s) | 393, 558, 627 |
| DpnII | GATC | 3 cut(s) | 391, 556, 625 |
| Eam1104I | CTCTTC | 1 cut(s) | 295 |
| EarI | CTCTTC | 1 cut(s) | 295 |
| Eco47I | GGWCC | 2 cut(s) | 425, 575 |
| Eco72I | CACGTG | 1 cut(s) | 119 |
| Eco88I | CYCGRG | 1 cut(s) | 428 |
| EcoRII | CCWGG | 2 cut(s) | 571, 589 |
| FaeI | CATG | 2 cut(s) | 305, 398 |
| FaiI | YATR | 9 cut(s) | 20, 24, 99, 149, 303, 309, 396, 423, 554 |
| FaqI | GGGAC | 1 cut(s) | 411 |
| FatI | CATG | 2 cut(s) | 301, 394 |
| Fnu4HI | GCNGC | 1 cut(s) | 204 |
| FokI | GGATG | 2 cut(s) | 539, 593 |
| Fsp4HI | GCNGC | 1 cut(s) | 204 |
| FspBI | CTAG | 4 cut(s) | 57, 474, 506, 564 |
| GluI | GCNGC | 1 cut(s) | 204 |
| GsaI | CCCAGC | 1 cut(s) | 616 |
| GsuI | CTGGAG | 1 cut(s) | 262 |
| HapII | CCGG | 2 cut(s) | 429, 578 |
| Hin1II | CATG | 2 cut(s) | 305, 398 |
| HinfI | GANTC | 1 cut(s) | 532 |
| HpaII | CCGG | 2 cut(s) | 429, 578 |
| HphI | GGTGA | 1 cut(s) | 290 |
| Hpy188I | TCNGA | 3 cut(s) | 157, 373, 537 |
| Hpy188III | TCNNGA | 4 cut(s) | 212, 241, 578, 629 |
| HpyAV | CCTTC | 4 cut(s) | 103, 269, 528, 570 |
| HpyCH4III | ACNGT | 1 cut(s) | 82 |
| HpyCH4IV | ACGT | 1 cut(s) | 118 |
| HpyCH4V | TGCA | 5 cut(s) | 34, 116, 206, 326, 542 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 128, 203 |
| HpyF3I | CTNAG | 3 cut(s) | 198, 372, 478 |
| HpySE526I | ACGT | 1 cut(s) | 118 |
| Hsp92II | CATG | 2 cut(s) | 305, 398 |
| Kpn2I | TCCGGA | 1 cut(s) | 577 |
| KspI | CCGCGG | 1 cut(s) | 525 |
| Kzo9I | GATC | 3 cut(s) | 391, 556, 625 |
| LguI | GCTCTTC | 1 cut(s) | 295 |
| Lsp1109I | GCAGC | 1 cut(s) | 190 |
| MaeI | CTAG | 4 cut(s) | 57, 474, 506, 564 |
| MaeII | ACGT | 1 cut(s) | 118 |
| MaeIII | GTNAC | 1 cut(s) | 25 |
| MalI | GATC | 3 cut(s) | 393, 558, 627 |
| MboI | GATC | 3 cut(s) | 391, 556, 625 |
| MboII | GAAGA | 1 cut(s) | 282 |
| MflI | RGATCY | 1 cut(s) | 556 |
| MluCI | AATT | 8 cut(s) | 67, 103, 124, 175, 320, 336, 340, 455 |
| MnlI | CCTC | 5 cut(s) | 175, 208, 226, 352, 377 |
| MroI | TCCGGA | 1 cut(s) | 577 |
| MroXI | GAANNNNTTC | 1 cut(s) | 459 |
| MseI | TTAA | 2 cut(s) | 261, 339 |
| MslI | CAYNNNNRTG | 1 cut(s) | 306 |
| MspA1I | CMGCKG | 1 cut(s) | 524 |
| MspI | CCGG | 2 cut(s) | 429, 578 |
| MspR9I | CCNGG | 4 cut(s) | 429, 430, 573, 591 |
| Mva1269I | GAATGC | 1 cut(s) | 236 |
| MvaI | CCWGG | 2 cut(s) | 573, 591 |
| MvnI | CGCG | 1 cut(s) | 524 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 128, 203 |
| NciI | CCSGG | 2 cut(s) | 429, 430 |
| NdeII | GATC | 3 cut(s) | 391, 556, 625 |
| NlaIII | CATG | 2 cut(s) | 305, 398 |
| NlaIV | GGNNCC | 2 cut(s) | 427, 558 |
| NmuCI | GTSAC | 1 cut(s) | 25 |
| PciSI | GCTCTTC | 1 cut(s) | 295 |
| PctI | GAATGC | 1 cut(s) | 236 |
| PdmI | GAANNNNTTC | 1 cut(s) | 459 |
| PfeI | GAWTC | 1 cut(s) | 532 |
| PkrI | GCNGC | 1 cut(s) | 205 |
| PmaCI | CACGTG | 1 cut(s) | 119 |
| PmlI | CACGTG | 1 cut(s) | 119 |
| Ppu21I | YACGTR | 1 cut(s) | 119 |
| PshBI | ATTAAT | 1 cut(s) | 339 |
| Psp6I | CCWGG | 2 cut(s) | 571, 589 |
| PspCI | CACGTG | 1 cut(s) | 119 |
| PspFI | CCCAGC | 1 cut(s) | 612 |
| PspGI | CCWGG | 2 cut(s) | 571, 589 |
| PspN4I | GGNNCC | 2 cut(s) | 427, 558 |
| PspPI | GGNCC | 2 cut(s) | 425, 575 |
| PstI | CTGCAG | 1 cut(s) | 208 |
| PsuI | RGATCY | 1 cut(s) | 556 |
| RseI | CAYNNNNRTG | 1 cut(s) | 306 |
| SacII | CCGCGG | 1 cut(s) | 525 |
| SapI | GCTCTTC | 1 cut(s) | 295 |
| SaqAI | TTAA | 2 cut(s) | 261, 339 |
| SatI | GCNGC | 1 cut(s) | 204 |
| Sau3AI | GATC | 3 cut(s) | 391, 556, 625 |
| Sau96I | GGNCC | 2 cut(s) | 425, 575 |
| ScrFI | CCNGG | 4 cut(s) | 429, 430, 573, 591 |
| SetI | ASST | 7 cut(s) | 114, 121, 154, 280, 468, 479, 595 |
| SfcI | CTRYAG | 1 cut(s) | 204 |
| Sfr303I | CCGCGG | 1 cut(s) | 525 |
| SgrBI | CCGCGG | 1 cut(s) | 525 |
| SinI | GGWCC | 2 cut(s) | 425, 575 |
| SmaI | CCCGGG | 1 cut(s) | 430 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 306 |
| SmlI | CTYRAG | 1 cut(s) | 212 |
| SmoI | CTYRAG | 1 cut(s) | 212 |
| Sse9I | AATT | 8 cut(s) | 67, 103, 124, 175, 320, 336, 340, 455 |
| SsiI | CCGC | 3 cut(s) | 389, 522, 524 |
| SspMI | CTAG | 4 cut(s) | 57, 474, 506, 564 |
| StyD4I | CCNGG | 4 cut(s) | 427, 428, 571, 589 |
| TaaI | ACNGT | 1 cut(s) | 82 |
| TaiI | ACGT | 1 cut(s) | 121 |
| TasI | AATT | 8 cut(s) | 67, 103, 124, 175, 320, 336, 340, 455 |
| TfiI | GAWTC | 1 cut(s) | 532 |
| Tru1I | TTAA | 2 cut(s) | 261, 339 |
| Tru9I | TTAA | 2 cut(s) | 261, 339 |
| TscAI | CASTG | 1 cut(s) | 85 |
| TseFI | GTSAC | 1 cut(s) | 25 |
| TseI | GCWGC | 1 cut(s) | 203 |
| Tsp45I | GTSAC | 1 cut(s) | 25 |
| TspDTI | ATGAA | 4 cut(s) | 86, 290, 468, 507 |
| TspMI | CCCGGG | 1 cut(s) | 428 |
| TspRI | CASTG | 1 cut(s) | 85 |
| VpaK11BI | GGWCC | 2 cut(s) | 425, 575 |
| VspI | ATTAAT | 1 cut(s) | 339 |
| XapI | RAATTY | 3 cut(s) | 103, 320, 455 |
| XmaI | CCCGGG | 1 cut(s) | 428 |
| XmnI | GAANNNNTTC | 1 cut(s) | 459 |
| XspI | CTAG | 4 cut(s) | 57, 474, 506, 564 |