Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 17, 116 |
| AcuI | CTGAAG | 1 cut(s) | 126 |
| AdeI | CACNNNGTG | 1 cut(s) | 14 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 17 |
| AluBI | AGCT | 4 cut(s) | 93, 104, 128, 233 |
| AluI | AGCT | 4 cut(s) | 93, 104, 128, 233 |
| Alw26I | GTCTC | 1 cut(s) | 302 |
| Ama87I | CYCGRG | 1 cut(s) | 305 |
| ApeKI | GCWGC | 1 cut(s) | 101 |
| AsuHPI | GGTGA | 2 cut(s) | 62, 254 |
| AvaI | CYCGRG | 1 cut(s) | 305 |
| BaeGI | GKGCMC | 1 cut(s) | 306 |
| BbsI | GAAGAC | 1 cut(s) | 149 |
| BbvI | GCAGC | 1 cut(s) | 113 |
| BcoDI | GTCTC | 1 cut(s) | 302 |
| BisI | GCNGC | 1 cut(s) | 102 |
| BlsI | GCNGC | 1 cut(s) | 103 |
| BmeT110I | CYCGRG | 1 cut(s) | 305 |
| BmsI | GCATC | 2 cut(s) | 214, 235 |
| BpiI | GAAGAC | 1 cut(s) | 149 |
| BpmI | CTGGAG | 1 cut(s) | 58 |
| BsaI | GGTCTC | 1 cut(s) | 302 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 17 |
| Bse1I | ACTGG | 1 cut(s) | 75 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 17 |
| BseNI | ACTGG | 1 cut(s) | 75 |
| BseRI | GAGGAG | 1 cut(s) | 61 |
| BseSI | GKGCMC | 1 cut(s) | 306 |
| BseXI | GCAGC | 1 cut(s) | 113 |
| BsiHKCI | CYCGRG | 1 cut(s) | 305 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 17 |
| BsmAI | GTCTC | 1 cut(s) | 302 |
| Bso31I | GGTCTC | 1 cut(s) | 302 |
| BsoBI | CYCGRG | 1 cut(s) | 305 |
| Bsp1286I | GDGCHC | 1 cut(s) | 306 |
| BspACI | CCGC | 2 cut(s) | 17, 116 |
| BspTNI | GGTCTC | 1 cut(s) | 302 |
| BsrI | ACTGG | 1 cut(s) | 75 |
| Bst4CI | ACNGT | 2 cut(s) | 155, 313 |
| BstMAI | GTCTC | 1 cut(s) | 302 |
| BstSLI | GKGCMC | 1 cut(s) | 306 |
| BstV1I | GCAGC | 1 cut(s) | 113 |
| BstV2I | GAAGAC | 1 cut(s) | 149 |
| CviJI | RGCY | 5 cut(s) | 93, 104, 128, 140, 233 |
| CviKI_1 | RGCY | 5 cut(s) | 93, 104, 128, 140, 233 |
| DraIII | CACNNNGTG | 1 cut(s) | 14 |
| Eco31I | GGTCTC | 1 cut(s) | 302 |
| Eco32I | GATATC | 1 cut(s) | 85 |
| Eco57I | CTGAAG | 1 cut(s) | 126 |
| Eco88I | CYCGRG | 1 cut(s) | 305 |
| EcoRV | GATATC | 1 cut(s) | 85 |
| FaiI | YATR | 5 cut(s) | 24, 174, 176, 201, 260 |
| FauI | CCCGC | 1 cut(s) | 10 |
| FauNDI | CATATG | 1 cut(s) | 174 |
| Fnu4HI | GCNGC | 1 cut(s) | 102 |
| Fsp4HI | GCNGC | 1 cut(s) | 102 |
| GluI | GCNGC | 1 cut(s) | 102 |
| GsuI | CTGGAG | 1 cut(s) | 58 |
| HinfI | GANTC | 2 cut(s) | 272, 277 |
| HphI | GGTGA | 2 cut(s) | 62, 254 |
| Hpy188I | TCNGA | 1 cut(s) | 256 |
| Hpy188III | TCNNGA | 1 cut(s) | 38 |
| HpyCH4III | ACNGT | 2 cut(s) | 155, 313 |
| HpyCH4V | TGCA | 3 cut(s) | 101, 178, 290 |
| LpnPI | CCDG | 1 cut(s) | 88 |
| Lsp1109I | GCAGC | 1 cut(s) | 113 |
| LweI | GCATC | 2 cut(s) | 214, 235 |
| MaeIII | GTNAC | 2 cut(s) | 38, 149 |
| MboII | GAAGA | 2 cut(s) | 149, 180 |
| MhlI | GDGCHC | 1 cut(s) | 306 |
| MluCI | AATT | 3 cut(s) | 235, 284, 291 |
| MnlI | CCTC | 4 cut(s) | 46, 82, 199, 291 |
| MspA1I | CMGCKG | 1 cut(s) | 104 |
| NdeI | CATATG | 1 cut(s) | 174 |
| NmuCI | GTSAC | 1 cut(s) | 38 |
| PfeI | GAWTC | 2 cut(s) | 272, 277 |
| PkrI | GCNGC | 1 cut(s) | 103 |
| PvuII | CAGCTG | 1 cut(s) | 104 |
| SatI | GCNGC | 1 cut(s) | 102 |
| SduI | GDGCHC | 1 cut(s) | 306 |
| SetI | ASST | 5 cut(s) | 57, 95, 106, 130, 235 |
| SfaNI | GCATC | 2 cut(s) | 214, 235 |
| SgeI | CNNG | 9 cut(s) | 24, 30, 50, 58, 71, 87, 102, 153, 227 |
| Sse9I | AATT | 3 cut(s) | 235, 284, 291 |
| SsiI | CCGC | 2 cut(s) | 17, 116 |
| TaaI | ACNGT | 2 cut(s) | 155, 313 |
| TaqI | TCGA | 1 cut(s) | 275 |
| TasI | AATT | 3 cut(s) | 235, 284, 291 |
| TfiI | GAWTC | 2 cut(s) | 272, 277 |
| TseFI | GTSAC | 1 cut(s) | 38 |
| TseI | GCWGC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 1 cut(s) | 38 |
| TspDTI | ATGAA | 2 cut(s) | 17, 149 |