Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF212 | PF02681 | 17 - 150 | 6.5e-51 | Divergent PAP2 family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 473 |
| AccI | GTMKAC | 1 cut(s) | 35 |
| AciI | CCGC | 2 cut(s) | 14, 165 |
| AclWI | GGATC | 3 cut(s) | 153, 166, 247 |
| AcoI | YGGCCR | 2 cut(s) | 403, 463 |
| AcsI | RAATTY | 1 cut(s) | 435 |
| AcyI | GRCGYC | 1 cut(s) | 316 |
| AdeI | CACNNNGTG | 1 cut(s) | 392 |
| AfaI | GTAC | 1 cut(s) | 122 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 325 |
| AgsI | TTSAA | 2 cut(s) | 42, 224 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 486 |
| AjnI | CCWGG | 1 cut(s) | 116 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 312, 344 |
| AluBI | AGCT | 3 cut(s) | 20, 97, 106 |
| AluI | AGCT | 3 cut(s) | 20, 97, 106 |
| AlwI | GGATC | 3 cut(s) | 153, 166, 247 |
| AoxI | GGCC | 2 cut(s) | 403, 463 |
| ApeKI | GCWGC | 3 cut(s) | 17, 206, 209 |
| ApoI | RAATTY | 1 cut(s) | 435 |
| AsuHPI | GGTGA | 3 cut(s) | 17, 40, 103 |
| AxyI | CCTNAGG | 1 cut(s) | 417 |
| BalI | TGGCCA | 2 cut(s) | 405, 465 |
| BamHI | GGATCC | 1 cut(s) | 158 |
| BbsI | GAAGAC | 1 cut(s) | 21 |
| BbvI | GCAGC | 3 cut(s) | 29, 193, 221 |
| BccI | CCATC | 2 cut(s) | 129, 181 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 6, 40 |
| BciT130I | CCWGG | 1 cut(s) | 118 |
| BfaI | CTAG | 1 cut(s) | 486 |
| BfmI | CTRYAG | 1 cut(s) | 207 |
| BisI | GCNGC | 4 cut(s) | 15, 18, 207, 210 |
| BlsI | GCNGC | 4 cut(s) | 16, 19, 208, 211 |
| Bme1390I | CCNGG | 1 cut(s) | 118 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 486 |
| BmiI | GGNNCC | 1 cut(s) | 160 |
| BmrFI | CCNGG | 1 cut(s) | 118 |
| BmsI | GCATC | 2 cut(s) | 277, 373 |
| BpiI | GAAGAC | 1 cut(s) | 21 |
| BsaAI | YACGTR | 1 cut(s) | 495 |
| BsaHI | GRCGYC | 1 cut(s) | 316 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 325 |
| Bse1I | ACTGG | 1 cut(s) | 298 |
| Bse21I | CCTNAGG | 1 cut(s) | 417 |
| BseBI | CCWGG | 1 cut(s) | 118 |
| BseGI | GGATG | 1 cut(s) | 364 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 325 |
| BseMII | CTCAG | 3 cut(s) | 351, 366, 431 |
| BseNI | ACTGG | 1 cut(s) | 298 |
| BseXI | GCAGC | 3 cut(s) | 29, 193, 221 |
| BseYI | CCCAGC | 1 cut(s) | 93 |
| BshFI | GGCC | 2 cut(s) | 405, 465 |
| BsiSI | CCGG | 1 cut(s) | 162 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 325 |
| BsmI | GAATGC | 1 cut(s) | 174 |
| BsnI | GGCC | 2 cut(s) | 405, 465 |
| Bsp143I | GATC | 3 cut(s) | 158, 239, 261 |
| BspACI | CCGC | 2 cut(s) | 14, 165 |
| BspANI | GGCC | 2 cut(s) | 405, 465 |
| BspCNI | CTCAG | 3 cut(s) | 352, 367, 430 |
| BspLI | GGNNCC | 1 cut(s) | 160 |
| BspMAI | CTGCAG | 1 cut(s) | 211 |
| BspPI | GGATC | 3 cut(s) | 153, 166, 247 |
| BspQI | GCTCTTC | 1 cut(s) | 113 |
| BsrI | ACTGG | 1 cut(s) | 298 |
| BssMI | GATC | 3 cut(s) | 158, 239, 261 |
| BssNI | GRCGYC | 1 cut(s) | 316 |
| Bst2UI | CCWGG | 1 cut(s) | 118 |
| Bst4CI | ACNGT | 1 cut(s) | 193 |
| Bst6I | CTCTTC | 3 cut(s) | 66, 73, 113 |
| BstACI | GRCGYC | 1 cut(s) | 316 |
| BstBAI | YACGTR | 1 cut(s) | 495 |
| BstC8I | GCNNGC | 1 cut(s) | 271 |
| BstDEI | CTNAG | 4 cut(s) | 265, 360, 375, 417 |
| BstF5I | GGATG | 1 cut(s) | 364 |
| BstKTI | GATC | 3 cut(s) | 161, 242, 264 |
| BstMBI | GATC | 3 cut(s) | 158, 239, 261 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 103, 206 |
| BstNI | CCWGG | 1 cut(s) | 118 |
| BstNSI | RCATGY | 1 cut(s) | 273 |
| BstSCI | CCNGG | 1 cut(s) | 116 |
| BstSFI | CTRYAG | 1 cut(s) | 207 |
| BstV1I | GCAGC | 3 cut(s) | 29, 193, 221 |
| BstV2I | GAAGAC | 1 cut(s) | 21 |
| BstX2I | RGATCY | 1 cut(s) | 158 |
| BstYI | RGATCY | 1 cut(s) | 158 |
| Bsu36I | CCTNAGG | 1 cut(s) | 417 |
| BsuRI | GGCC | 2 cut(s) | 405, 465 |
| BtsCI | GGATG | 1 cut(s) | 364 |
| BtsI | GCAGTG | 1 cut(s) | 386 |
| BtsIMutI | CAGTG | 2 cut(s) | 257, 386 |
| Cac8I | GCNNGC | 1 cut(s) | 271 |
| CseI | GACGC | 2 cut(s) | 262, 324 |
| CsiI | ACCWGGT | 1 cut(s) | 116 |
| Csp6I | GTAC | 1 cut(s) | 121 |
| CviAII | CATG | 1 cut(s) | 270 |
| CviJI | RGCY | 9 cut(s) | 20, 92, 97, 106, 212, 311, 374, 405, 465 |
| CviKI_1 | RGCY | 9 cut(s) | 20, 92, 97, 106, 212, 311, 374, 405, 465 |
| CviQI | GTAC | 1 cut(s) | 121 |
| DdeI | CTNAG | 4 cut(s) | 265, 360, 375, 417 |
| DpnI | GATC | 3 cut(s) | 160, 241, 263 |
| DpnII | GATC | 3 cut(s) | 158, 239, 261 |
| DraIII | CACNNNGTG | 1 cut(s) | 392 |
| DriI | GACNNNNNGTC | 1 cut(s) | 486 |
| EaeI | YGGCCR | 2 cut(s) | 403, 463 |
| Eam1104I | CTCTTC | 3 cut(s) | 66, 73, 113 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 486 |
| EarI | CTCTTC | 3 cut(s) | 66, 73, 113 |
| EciI | GGCGGA | 1 cut(s) | 180 |
| Eco81I | CCTNAGG | 1 cut(s) | 417 |
| EcoRI | GAATTC | 1 cut(s) | 435 |
| EcoRII | CCWGG | 1 cut(s) | 116 |
| FaeI | CATG | 1 cut(s) | 273 |
| FaiI | YATR | 5 cut(s) | 271, 285, 348, 473, 492 |
| FatI | CATG | 1 cut(s) | 269 |
| FblI | GTMKAC | 1 cut(s) | 35 |
| Fnu4HI | GCNGC | 4 cut(s) | 15, 18, 207, 210 |
| FokI | GGATG | 1 cut(s) | 351 |
| Fsp4HI | GCNGC | 4 cut(s) | 15, 18, 207, 210 |
| FspBI | CTAG | 1 cut(s) | 486 |
| GluI | GCNGC | 4 cut(s) | 15, 18, 207, 210 |
| GsaI | CCCAGC | 1 cut(s) | 97 |
| HaeIII | GGCC | 2 cut(s) | 405, 465 |
| HapII | CCGG | 1 cut(s) | 162 |
| HgaI | GACGC | 2 cut(s) | 262, 324 |
| Hin1I | GRCGYC | 1 cut(s) | 316 |
| Hin1II | CATG | 1 cut(s) | 273 |
| HincII | GTYRAC | 1 cut(s) | 36 |
| HindII | GTYRAC | 1 cut(s) | 36 |
| HinfI | GANTC | 1 cut(s) | 334 |
| HpaII | CCGG | 1 cut(s) | 162 |
| HphI | GGTGA | 3 cut(s) | 17, 40, 103 |
| Hpy166II | GTNNAC | 2 cut(s) | 36, 395 |
| Hpy188I | TCNGA | 2 cut(s) | 333, 361 |
| Hpy188III | TCNNGA | 3 cut(s) | 224, 277, 478 |
| Hpy8I | GTNNAC | 2 cut(s) | 36, 395 |
| Hpy99I | CGWCG | 2 cut(s) | 37, 278 |
| HpyAV | CCTTC | 1 cut(s) | 366 |
| HpyCH4III | ACNGT | 1 cut(s) | 193 |
| HpyCH4IV | ACGT | 1 cut(s) | 494 |
| HpyCH4V | TGCA | 4 cut(s) | 209, 251, 257, 290 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 103, 206 |
| HpyF3I | CTNAG | 4 cut(s) | 265, 360, 375, 417 |
| HpySE526I | ACGT | 1 cut(s) | 494 |
| Hsp92I | GRCGYC | 1 cut(s) | 316 |
| Hsp92II | CATG | 1 cut(s) | 273 |
| Kzo9I | GATC | 3 cut(s) | 158, 239, 261 |
| LguI | GCTCTTC | 1 cut(s) | 113 |
| Lsp1109I | GCAGC | 3 cut(s) | 29, 193, 221 |
| LweI | GCATC | 2 cut(s) | 277, 373 |
| MabI | ACCWGGT | 1 cut(s) | 116 |
| MaeI | CTAG | 1 cut(s) | 486 |
| MaeII | ACGT | 1 cut(s) | 494 |
| MaeIII | GTNAC | 2 cut(s) | 193, 448 |
| MalI | GATC | 3 cut(s) | 160, 241, 263 |
| MboI | GATC | 3 cut(s) | 158, 239, 261 |
| MboII | GAAGA | 6 cut(s) | 21, 37, 53, 60, 100, 144 |
| MfeI | CAATTG | 1 cut(s) | 252 |
| MflI | RGATCY | 1 cut(s) | 158 |
| MlsI | TGGCCA | 2 cut(s) | 405, 465 |
| MluCI | AATT | 4 cut(s) | 252, 339, 435, 444 |
| MluNI | TGGCCA | 2 cut(s) | 405, 465 |
| MnlI | CCTC | 5 cut(s) | 69, 220, 319, 378, 426 |
| Mox20I | TGGCCA | 2 cut(s) | 405, 465 |
| MscI | TGGCCA | 2 cut(s) | 405, 465 |
| MseI | TTAA | 1 cut(s) | 144 |
| Msp20I | TGGCCA | 2 cut(s) | 405, 465 |
| MspI | CCGG | 1 cut(s) | 162 |
| MspR9I | CCNGG | 1 cut(s) | 118 |
| MunI | CAATTG | 1 cut(s) | 252 |
| Mva1269I | GAATGC | 1 cut(s) | 174 |
| MvaI | CCWGG | 1 cut(s) | 118 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 103, 206 |
| NdeII | GATC | 3 cut(s) | 158, 239, 261 |
| NlaIII | CATG | 1 cut(s) | 273 |
| NlaIV | GGNNCC | 1 cut(s) | 160 |
| NmuCI | GTSAC | 1 cut(s) | 448 |
| NspI | RCATGY | 1 cut(s) | 273 |
| PaeI | GCATGC | 1 cut(s) | 273 |
| PciSI | GCTCTTC | 1 cut(s) | 113 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 32 |
| PctI | GAATGC | 1 cut(s) | 174 |
| PfeI | GAWTC | 1 cut(s) | 334 |
| PkrI | GCNGC | 4 cut(s) | 16, 19, 208, 211 |
| Ppu21I | YACGTR | 1 cut(s) | 495 |
| PsiI | TTATAA | 1 cut(s) | 473 |
| Psp6I | CCWGG | 1 cut(s) | 116 |
| PspFI | CCCAGC | 1 cut(s) | 93 |
| PspGI | CCWGG | 1 cut(s) | 116 |
| PspN4I | GGNNCC | 1 cut(s) | 160 |
| PstI | CTGCAG | 1 cut(s) | 211 |
| PsuI | RGATCY | 1 cut(s) | 158 |
| RsaI | GTAC | 1 cut(s) | 122 |
| RsaNI | GTAC | 1 cut(s) | 121 |
| SalI | GTCGAC | 1 cut(s) | 34 |
| SapI | GCTCTTC | 1 cut(s) | 113 |
| SaqAI | TTAA | 1 cut(s) | 144 |
| SatI | GCNGC | 4 cut(s) | 15, 18, 207, 210 |
| Sau3AI | GATC | 3 cut(s) | 158, 239, 261 |
| ScrFI | CCNGG | 1 cut(s) | 118 |
| SetI | ASST | 8 cut(s) | 12, 22, 99, 108, 119, 330, 423, 497 |
| SexAI | ACCWGGT | 1 cut(s) | 116 |
| SfaNI | GCATC | 2 cut(s) | 277, 373 |
| SfcI | CTRYAG | 1 cut(s) | 207 |
| SphI | GCATGC | 1 cut(s) | 273 |
| Sse9I | AATT | 4 cut(s) | 252, 339, 435, 444 |
| SsiI | CCGC | 2 cut(s) | 14, 165 |
| SspMI | CTAG | 1 cut(s) | 486 |
| StyD4I | CCNGG | 1 cut(s) | 116 |
| TaaI | ACNGT | 1 cut(s) | 193 |
| TaiI | ACGT | 1 cut(s) | 497 |
| TaqI | TCGA | 1 cut(s) | 35 |
| TasI | AATT | 4 cut(s) | 252, 339, 435, 444 |
| TauI | GCSGC | 1 cut(s) | 17 |
| TfiI | GAWTC | 1 cut(s) | 334 |
| Tru1I | TTAA | 1 cut(s) | 144 |
| Tru9I | TTAA | 1 cut(s) | 144 |
| TscAI | CASTG | 2 cut(s) | 264, 393 |
| TseFI | GTSAC | 1 cut(s) | 448 |
| TseI | GCWGC | 3 cut(s) | 17, 206, 209 |
| Tsp45I | GTSAC | 1 cut(s) | 448 |
| TspDTI | ATGAA | 2 cut(s) | 12, 363 |
| TspRI | CASTG | 2 cut(s) | 264, 393 |
| XapI | RAATTY | 1 cut(s) | 435 |
| XceI | RCATGY | 1 cut(s) | 273 |
| XmiI | GTMKAC | 1 cut(s) | 35 |
| XspI | CTAG | 1 cut(s) | 486 |