ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 26 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 383 |
| AccII | CGCG | 4 cut(s) | 565, 570, 580, 590 |
| AciI | CCGC | 9 cut(s) | 41, 66, 162, 337, 524, 565, 575, 585, 596 |
| AclWI | GGATC | 2 cut(s) | 42, 398 |
| AcsI | RAATTY | 1 cut(s) | 153 |
| AcyI | GRCGYC | 1 cut(s) | 618 |
| AfaI | GTAC | 1 cut(s) | 93 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 383 |
| AgsI | TTSAA | 2 cut(s) | 310, 359 |
| AjnI | CCWGG | 1 cut(s) | 29 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 410, 442 |
| AluBI | AGCT | 4 cut(s) | 110, 173, 470, 545 |
| AluI | AGCT | 4 cut(s) | 110, 173, 470, 545 |
| Alw26I | GTCTC | 1 cut(s) | 141 |
| AlwI | GGATC | 2 cut(s) | 42, 398 |
| ApeKI | GCWGC | 2 cut(s) | 334, 521 |
| ApoI | RAATTY | 1 cut(s) | 153 |
| AseI | ATTAAT | 1 cut(s) | 380 |
| AspLEI | GCGC | 4 cut(s) | 565, 570, 580, 590 |
| AspS9I | GGNCC | 1 cut(s) | 612 |
| AsuHPI | GGTGA | 1 cut(s) | 212 |
| AvaII | GGWCC | 1 cut(s) | 612 |
| BanI | GGYRCC | 1 cut(s) | 26 |
| BbsI | GAAGAC | 1 cut(s) | 347 |
| BbvI | GCAGC | 2 cut(s) | 346, 533 |
| BccI | CCATC | 4 cut(s) | 17, 191, 401, 563 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 8, 42 |
| BciT130I | CCWGG | 1 cut(s) | 31 |
| BclI | TGATCA | 1 cut(s) | 121 |
| BcoDI | GTCTC | 1 cut(s) | 141 |
| BfaI | CTAG | 3 cut(s) | 228, 255, 622 |
| BfmI | CTRYAG | 1 cut(s) | 328 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 560 |
| BglII | AGATCT | 1 cut(s) | 600 |
| BisI | GCNGC | 5 cut(s) | 335, 522, 566, 576, 586 |
| BlsI | GCNGC | 5 cut(s) | 336, 523, 567, 577, 587 |
| Bme1390I | CCNGG | 1 cut(s) | 31 |
| Bme18I | GGWCC | 1 cut(s) | 612 |
| BmgT120I | GGNCC | 1 cut(s) | 612 |
| BmiI | GGNNCC | 1 cut(s) | 28 |
| BmrFI | CCNGG | 1 cut(s) | 31 |
| BmrI | ACTGGG | 1 cut(s) | 527 |
| BmsI | GCATC | 3 cut(s) | 233, 379, 541 |
| BmuI | ACTGGG | 1 cut(s) | 527 |
| BpiI | GAAGAC | 1 cut(s) | 347 |
| Bpu10I | CCTNAGC | 1 cut(s) | 165 |
| BpuEI | CTTGAG | 1 cut(s) | 96 |
| BsaHI | GRCGYC | 1 cut(s) | 618 |
| BsaI | GGTCTC | 1 cut(s) | 141 |
| BsaJI | CCNNGG | 1 cut(s) | 30 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 383 |
| Bse1I | ACTGG | 2 cut(s) | 274, 533 |
| Bse3DI | GCAATG | 1 cut(s) | 261 |
| BseBI | CCWGG | 1 cut(s) | 31 |
| BseDI | CCNNGG | 1 cut(s) | 30 |
| BseGI | GGATG | 1 cut(s) | 370 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 383 |
| BseMI | GCAATG | 1 cut(s) | 261 |
| BseMII | CTCAG | 1 cut(s) | 252 |
| BseNI | ACTGG | 2 cut(s) | 274, 533 |
| BseRI | GAGGAG | 1 cut(s) | 336 |
| BseXI | GCAGC | 2 cut(s) | 346, 533 |
| Bsh1236I | CGCG | 4 cut(s) | 565, 570, 580, 590 |
| BshNI | GGYRCC | 1 cut(s) | 26 |
| BslFI | GGGAC | 1 cut(s) | 473 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 383 |
| BsmAI | GTCTC | 1 cut(s) | 141 |
| BsmFI | GGGAC | 1 cut(s) | 473 |
| Bso31I | GGTCTC | 1 cut(s) | 141 |
| Bsp143I | GATC | 5 cut(s) | 34, 121, 234, 390, 600 |
| BspACI | CCGC | 9 cut(s) | 41, 66, 162, 337, 524, 565, 575, 585, 596 |
| BspCNI | CTCAG | 1 cut(s) | 251 |
| BspFNI | CGCG | 4 cut(s) | 565, 570, 580, 590 |
| BspHI | TCATGA | 1 cut(s) | 292 |
| BspLI | GGNNCC | 1 cut(s) | 28 |
| BspPI | GGATC | 2 cut(s) | 42, 398 |
| BspT107I | GGYRCC | 1 cut(s) | 26 |
| BspTNI | GGTCTC | 1 cut(s) | 141 |
| BsrDI | GCAATG | 1 cut(s) | 261 |
| BsrI | ACTGG | 2 cut(s) | 274, 533 |
| BssECI | CCNNGG | 1 cut(s) | 30 |
| BssMI | GATC | 5 cut(s) | 34, 121, 234, 390, 600 |
| BssNI | GRCGYC | 1 cut(s) | 618 |
| Bst2UI | CCWGG | 1 cut(s) | 31 |
| Bst4CI | ACNGT | 1 cut(s) | 329 |
| Bst6I | CTCTTC | 2 cut(s) | 51, 305 |
| BstACI | GRCGYC | 1 cut(s) | 618 |
| BstDEI | CTNAG | 2 cut(s) | 165, 238 |
| BstF5I | GGATG | 1 cut(s) | 370 |
| BstFNI | CGCG | 4 cut(s) | 565, 570, 580, 590 |
| BstHHI | GCGC | 4 cut(s) | 565, 570, 580, 590 |
| BstKTI | GATC | 5 cut(s) | 37, 124, 237, 393, 603 |
| BstMAI | GTCTC | 1 cut(s) | 141 |
| BstMBI | GATC | 5 cut(s) | 34, 121, 234, 390, 600 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 170, 551, 560 |
| BstNI | CCWGG | 1 cut(s) | 31 |
| BstNSI | RCATGY | 2 cut(s) | 280, 441 |
| BstSCI | CCNGG | 1 cut(s) | 29 |
| BstSFI | CTRYAG | 1 cut(s) | 328 |
| BstUI | CGCG | 4 cut(s) | 565, 570, 580, 590 |
| BstV1I | GCAGC | 2 cut(s) | 346, 533 |
| BstV2I | GAAGAC | 1 cut(s) | 347 |
| BstX2I | RGATCY | 2 cut(s) | 34, 600 |
| BstYI | RGATCY | 2 cut(s) | 34, 600 |
| BtsCI | GGATG | 1 cut(s) | 370 |
| BtsIMutI | CAGTG | 2 cut(s) | 267, 325 |
| CciI | TCATGA | 1 cut(s) | 292 |
| CfoI | GCGC | 4 cut(s) | 565, 570, 580, 590 |
| Cfr13I | GGNCC | 1 cut(s) | 612 |
| CseI | GACGC | 1 cut(s) | 579 |
| Csp6I | GTAC | 1 cut(s) | 92 |
| CviAII | CATG | 4 cut(s) | 277, 293, 414, 438 |
| CviJI | RGCY | 6 cut(s) | 110, 173, 232, 450, 470, 545 |
| CviKI_1 | RGCY | 6 cut(s) | 110, 173, 232, 450, 470, 545 |
| CviQI | GTAC | 1 cut(s) | 92 |
| DdeI | CTNAG | 2 cut(s) | 165, 238 |
| DpnI | GATC | 5 cut(s) | 36, 123, 236, 392, 602 |
| DpnII | GATC | 5 cut(s) | 34, 121, 234, 390, 600 |
| Eam1104I | CTCTTC | 2 cut(s) | 51, 305 |
| EarI | CTCTTC | 2 cut(s) | 51, 305 |
| EciI | GGCGGA | 2 cut(s) | 30, 611 |
| Eco31I | GGTCTC | 1 cut(s) | 141 |
| Eco47I | GGWCC | 1 cut(s) | 612 |
| EcoRI | GAATTC | 1 cut(s) | 153 |
| EcoRII | CCWGG | 1 cut(s) | 29 |
| EcoT22I | ATGCAT | 2 cut(s) | 282, 510 |
| FaeI | CATG | 4 cut(s) | 280, 296, 417, 441 |
| FaqI | GGGAC | 1 cut(s) | 473 |
| FatI | CATG | 4 cut(s) | 276, 292, 413, 437 |
| FauI | CCCGC | 1 cut(s) | 73 |
| FbaI | TGATCA | 1 cut(s) | 121 |
| Fnu4HI | GCNGC | 5 cut(s) | 335, 522, 566, 576, 586 |
| FokI | GGATG | 1 cut(s) | 357 |
| Fsp4HI | GCNGC | 5 cut(s) | 335, 522, 566, 576, 586 |
| FspBI | CTAG | 3 cut(s) | 228, 255, 622 |
| GlaI | GCGC | 4 cut(s) | 564, 569, 579, 589 |
| GluI | GCNGC | 5 cut(s) | 335, 522, 566, 576, 586 |
| HgaI | GACGC | 1 cut(s) | 579 |
| HhaI | GCGC | 4 cut(s) | 565, 570, 580, 590 |
| Hin1I | GRCGYC | 1 cut(s) | 618 |
| Hin1II | CATG | 4 cut(s) | 280, 296, 417, 441 |
| Hin6I | GCGC | 4 cut(s) | 563, 568, 578, 588 |
| HinP1I | GCGC | 4 cut(s) | 563, 568, 578, 588 |
| HindIII | AAGCTT | 2 cut(s) | 171, 543 |
| HinfI | GANTC | 1 cut(s) | 343 |
| HphI | GGTGA | 1 cut(s) | 212 |
| Hpy166II | GTNNAC | 2 cut(s) | 85, 325 |
| Hpy188I | TCNGA | 4 cut(s) | 241, 541, 550, 616 |
| Hpy188III | TCNNGA | 6 cut(s) | 150, 178, 293, 394, 458, 604 |
| Hpy8I | GTNNAC | 2 cut(s) | 85, 325 |
| Hpy99I | CGWCG | 2 cut(s) | 595, 620 |
| HpyAV | CCTTC | 1 cut(s) | 150 |
| HpyCH4III | ACNGT | 1 cut(s) | 329 |
| HpyCH4V | TGCA | 5 cut(s) | 8, 58, 280, 508, 521 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 170, 551, 560 |
| HpyF3I | CTNAG | 2 cut(s) | 165, 238 |
| Hsp92I | GRCGYC | 1 cut(s) | 618 |
| Hsp92II | CATG | 4 cut(s) | 280, 296, 417, 441 |
| HspAI | GCGC | 4 cut(s) | 563, 568, 578, 588 |
| Ksp22I | TGATCA | 1 cut(s) | 121 |
| Kzo9I | GATC | 5 cut(s) | 34, 121, 234, 390, 600 |
| LmnI | GCTCC | 2 cut(s) | 410, 497 |
| LpnPI | CCDG | 7 cut(s) | 16, 43, 135, 163, 255, 546, 589 |
| Lsp1109I | GCAGC | 2 cut(s) | 346, 533 |
| LweI | GCATC | 3 cut(s) | 233, 379, 541 |
| MaeI | CTAG | 3 cut(s) | 228, 255, 622 |
| MaeIII | GTNAC | 3 cut(s) | 257, 272, 422 |
| MalI | GATC | 5 cut(s) | 36, 123, 236, 392, 602 |
| MboI | GATC | 5 cut(s) | 34, 121, 234, 390, 600 |
| MboII | GAAGA | 5 cut(s) | 29, 32, 38, 322, 352 |
| MflI | RGATCY | 2 cut(s) | 34, 600 |
| MluCI | AATT | 4 cut(s) | 153, 364, 381, 496 |
| MlyI | GAGTC | 1 cut(s) | 337 |
| MmeI | TCCRAC | 1 cut(s) | 368 |
| MnlI | CCTC | 5 cut(s) | 54, 306, 357, 384, 600 |
| Mph1103I | ATGCAT | 2 cut(s) | 282, 510 |
| MseI | TTAA | 4 cut(s) | 105, 128, 363, 380 |
| MspA1I | CMGCKG | 2 cut(s) | 337, 524 |
| MspR9I | CCNGG | 1 cut(s) | 31 |
| MteI | GCGCNGCGC | 1 cut(s) | 566 |
| MvaI | CCWGG | 1 cut(s) | 31 |
| MvnI | CGCG | 4 cut(s) | 565, 570, 580, 590 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 170, 551, 560 |
| NdeII | GATC | 5 cut(s) | 34, 121, 234, 390, 600 |
| NlaIII | CATG | 4 cut(s) | 280, 296, 417, 441 |
| NlaIV | GGNNCC | 1 cut(s) | 28 |
| NmuCI | GTSAC | 3 cut(s) | 257, 272, 422 |
| NsiI | ATGCAT | 2 cut(s) | 282, 510 |
| NspI | RCATGY | 2 cut(s) | 280, 441 |
| PagI | TCATGA | 1 cut(s) | 292 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 383 |
| PkrI | GCNGC | 5 cut(s) | 336, 523, 567, 577, 587 |
| PleI | GAGTC | 1 cut(s) | 337 |
| PpsI | GAGTC | 1 cut(s) | 337 |
| PshBI | ATTAAT | 1 cut(s) | 380 |
| Psp6I | CCWGG | 1 cut(s) | 29 |
| PspGI | CCWGG | 1 cut(s) | 29 |
| PspN4I | GGNNCC | 1 cut(s) | 28 |
| PspPI | GGNCC | 1 cut(s) | 612 |
| PsuI | RGATCY | 2 cut(s) | 34, 600 |
| RsaI | GTAC | 1 cut(s) | 93 |
| RsaNI | GTAC | 1 cut(s) | 92 |
| SaqAI | TTAA | 4 cut(s) | 105, 128, 363, 380 |
| SatI | GCNGC | 5 cut(s) | 335, 522, 566, 576, 586 |
| Sau3AI | GATC | 5 cut(s) | 34, 121, 234, 390, 600 |
| Sau96I | GGNCC | 1 cut(s) | 612 |
| SchI | GAGTC | 1 cut(s) | 337 |
| ScrFI | CCNGG | 1 cut(s) | 31 |
| SetI | ASST | 8 cut(s) | 112, 175, 189, 300, 317, 472, 547, 611 |
| SfaNI | GCATC | 3 cut(s) | 233, 379, 541 |
| SfcI | CTRYAG | 1 cut(s) | 328 |
| SinI | GGWCC | 1 cut(s) | 612 |
| SmlI | CTYRAG | 1 cut(s) | 111 |
| SmoI | CTYRAG | 1 cut(s) | 111 |
| Sse9I | AATT | 4 cut(s) | 153, 364, 381, 496 |
| SsiI | CCGC | 9 cut(s) | 41, 66, 162, 337, 524, 565, 575, 585, 596 |
| SspI | AATATT | 1 cut(s) | 208 |
| SspMI | CTAG | 3 cut(s) | 228, 255, 622 |
| StyD4I | CCNGG | 1 cut(s) | 29 |
| TaaI | ACNGT | 1 cut(s) | 329 |
| TaqI | TCGA | 1 cut(s) | 18 |
| TasI | AATT | 4 cut(s) | 153, 364, 381, 496 |
| TauI | GCSGC | 3 cut(s) | 568, 578, 588 |
| Tru1I | TTAA | 4 cut(s) | 105, 128, 363, 380 |
| Tru9I | TTAA | 4 cut(s) | 105, 128, 363, 380 |
| TscAI | CASTG | 2 cut(s) | 274, 332 |
| TseFI | GTSAC | 3 cut(s) | 257, 272, 422 |
| TseI | GCWGC | 2 cut(s) | 334, 521 |
| Tsp45I | GTSAC | 3 cut(s) | 257, 272, 422 |
| TspDTI | ATGAA | 1 cut(s) | 240 |
| TspRI | CASTG | 2 cut(s) | 274, 332 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 383 |
| VpaK11BI | GGWCC | 1 cut(s) | 612 |
| VspI | ATTAAT | 1 cut(s) | 380 |
| XapI | RAATTY | 1 cut(s) | 153 |
| XceI | RCATGY | 2 cut(s) | 280, 441 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 384 |
| XspI | CTAG | 3 cut(s) | 228, 255, 622 |
| Zsp2I | ATGCAT | 2 cut(s) | 282, 510 |