ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 762 |
| AccI | GTMKAC | 1 cut(s) | 344 |
| AccII | CGCG | 1 cut(s) | 22 |
| AciI | CCGC | 2 cut(s) | 569, 664 |
| AclWI | GGATC | 1 cut(s) | 719 |
| AcoI | YGGCCR | 1 cut(s) | 182 |
| AcsI | RAATTY | 2 cut(s) | 643, 999 |
| AcuI | CTGAAG | 3 cut(s) | 69, 558, 762 |
| AfaI | GTAC | 1 cut(s) | 261 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 670 |
| AflII | CTTAAG | 1 cut(s) | 413 |
| AgsI | TTSAA | 4 cut(s) | 319, 403, 491, 687 |
| AjnI | CCWGG | 2 cut(s) | 262, 350 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 984, 1016 |
| AluBI | AGCT | 3 cut(s) | 203, 359, 605 |
| AluI | AGCT | 3 cut(s) | 203, 359, 605 |
| Alw21I | GWGCWC | 1 cut(s) | 607 |
| AlwI | GGATC | 1 cut(s) | 719 |
| Ama87I | CYCGRG | 1 cut(s) | 210 |
| AoxI | GGCC | 5 cut(s) | 182, 353, 396, 465, 552 |
| ApoI | RAATTY | 2 cut(s) | 643, 999 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 326, 358 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 882 |
| AspLEI | GCGC | 2 cut(s) | 22, 681 |
| AspS9I | GGNCC | 2 cut(s) | 269, 466 |
| AsuC2I | CCSGG | 1 cut(s) | 902 |
| AvaI | CYCGRG | 1 cut(s) | 210 |
| AvaII | GGWCC | 1 cut(s) | 269 |
| BalI | TGGCCA | 1 cut(s) | 184 |
| BanII | GRGCYC | 1 cut(s) | 607 |
| BauI | CACGAG | 1 cut(s) | 606 |
| Bbv12I | GWGCWC | 1 cut(s) | 607 |
| BccI | CCATC | 1 cut(s) | 158 |
| BceAI | ACGGC | 1 cut(s) | 155 |
| BciT130I | CCWGG | 2 cut(s) | 264, 352 |
| BciVI | GTATCC | 1 cut(s) | 23 |
| BclI | TGATCA | 1 cut(s) | 223 |
| BcnI | CCSGG | 1 cut(s) | 902 |
| BfmI | CTRYAG | 1 cut(s) | 873 |
| BfoI | RGCGCY | 1 cut(s) | 682 |
| BfrI | CTTAAG | 1 cut(s) | 413 |
| BfuI | GTATCC | 1 cut(s) | 23 |
| Bme1390I | CCNGG | 3 cut(s) | 264, 352, 902 |
| Bme18I | GGWCC | 1 cut(s) | 269 |
| BmeT110I | CYCGRG | 1 cut(s) | 210 |
| BmgT120I | GGNCC | 2 cut(s) | 269, 466 |
| BmiI | GGNNCC | 3 cut(s) | 270, 468, 906 |
| BmrFI | CCNGG | 3 cut(s) | 264, 352, 902 |
| BmsI | GCATC | 2 cut(s) | 369, 586 |
| BpuMI | CCSGG | 1 cut(s) | 902 |
| BsaJI | CCNNGG | 2 cut(s) | 263, 828 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 670 |
| Bse118I | RCCGGY | 1 cut(s) | 248 |
| Bse3DI | GCAATG | 3 cut(s) | 52, 425, 691 |
| BseBI | CCWGG | 2 cut(s) | 264, 352 |
| BseDI | CCNNGG | 2 cut(s) | 263, 828 |
| BseGI | GGATG | 1 cut(s) | 847 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 670 |
| BseMI | GCAATG | 3 cut(s) | 52, 425, 691 |
| BseMII | CTCAG | 2 cut(s) | 615, 828 |
| BseYI | CCCAGC | 1 cut(s) | 923 |
| Bsh1236I | CGCG | 1 cut(s) | 22 |
| BshFI | GGCC | 5 cut(s) | 184, 355, 398, 467, 554 |
| BsiHKAI | GWGCWC | 1 cut(s) | 607 |
| BsiHKCI | CYCGRG | 1 cut(s) | 210 |
| BsiSI | CCGG | 2 cut(s) | 249, 902 |
| BslFI | GGGAC | 2 cut(s) | 351, 611 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 670 |
| BsmFI | GGGAC | 2 cut(s) | 351, 611 |
| BsnI | GGCC | 5 cut(s) | 184, 355, 398, 467, 554 |
| BsoBI | CYCGRG | 1 cut(s) | 210 |
| Bsp1286I | GDGCHC | 1 cut(s) | 607 |
| Bsp143I | GATC | 3 cut(s) | 145, 223, 724 |
| BspACI | CCGC | 2 cut(s) | 569, 664 |
| BspANI | GGCC | 5 cut(s) | 184, 355, 398, 467, 554 |
| BspCNI | CTCAG | 2 cut(s) | 616, 829 |
| BspFNI | CGCG | 1 cut(s) | 22 |
| BspLI | GGNNCC | 3 cut(s) | 270, 468, 906 |
| BspMAI | CTGCAG | 1 cut(s) | 877 |
| BspPI | GGATC | 1 cut(s) | 719 |
| BspQI | GCTCTTC | 2 cut(s) | 210, 688 |
| BspTI | CTTAAG | 1 cut(s) | 413 |
| BsrDI | GCAATG | 3 cut(s) | 52, 425, 691 |
| BsrFI | RCCGGY | 1 cut(s) | 248 |
| BssAI | RCCGGY | 1 cut(s) | 248 |
| BssECI | CCNNGG | 2 cut(s) | 263, 828 |
| BssMI | GATC | 3 cut(s) | 145, 223, 724 |
| BssSI | CACGAG | 1 cut(s) | 606 |
| BssT1I | CCWWGG | 1 cut(s) | 828 |
| Bst2BI | CACGAG | 1 cut(s) | 606 |
| Bst2UI | CCWGG | 2 cut(s) | 264, 352 |
| Bst4CI | ACNGT | 2 cut(s) | 197, 433 |
| Bst6I | CTCTTC | 4 cut(s) | 210, 316, 688, 873 |
| BstAFI | CTTAAG | 1 cut(s) | 413 |
| BstC8I | GCNNGC | 2 cut(s) | 357, 664 |
| BstDEI | CTNAG | 3 cut(s) | 474, 624, 837 |
| BstF5I | GGATG | 1 cut(s) | 847 |
| BstFNI | CGCG | 1 cut(s) | 22 |
| BstH2I | RGCGCY | 1 cut(s) | 682 |
| BstHHI | GCGC | 2 cut(s) | 22, 681 |
| BstKTI | GATC | 3 cut(s) | 148, 226, 727 |
| BstMBI | GATC | 3 cut(s) | 145, 223, 724 |
| BstNI | CCWGG | 2 cut(s) | 264, 352 |
| BstSCI | CCNGG | 3 cut(s) | 262, 350, 900 |
| BstSFI | CTRYAG | 1 cut(s) | 873 |
| BstUI | CGCG | 1 cut(s) | 22 |
| BsuI | GTATCC | 1 cut(s) | 23 |
| BsuRI | GGCC | 5 cut(s) | 184, 355, 398, 467, 554 |
| BtsCI | GGATG | 1 cut(s) | 847 |
| BtsI | GCAGTG | 1 cut(s) | 870 |
| BtsIMutI | CAGTG | 1 cut(s) | 870 |
| Cac8I | GCNNGC | 2 cut(s) | 357, 664 |
| CfoI | GCGC | 2 cut(s) | 22, 681 |
| Cfr10I | RCCGGY | 1 cut(s) | 248 |
| Cfr13I | GGNCC | 2 cut(s) | 269, 466 |
| Csp6I | GTAC | 1 cut(s) | 260 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 278, 313 |
| CviAII | CATG | 4 cut(s) | 102, 370, 408, 746 |
| CviQI | GTAC | 1 cut(s) | 260 |
| DdeI | CTNAG | 3 cut(s) | 474, 624, 837 |
| DpnI | GATC | 3 cut(s) | 147, 225, 726 |
| DpnII | GATC | 3 cut(s) | 145, 223, 724 |
| EaeI | YGGCCR | 1 cut(s) | 182 |
| Eam1104I | CTCTTC | 4 cut(s) | 210, 316, 688, 873 |
| EarI | CTCTTC | 4 cut(s) | 210, 316, 688, 873 |
| Ecl136II | GAGCTC | 1 cut(s) | 605 |
| Eco130I | CCWWGG | 1 cut(s) | 828 |
| Eco147I | AGGCCT | 1 cut(s) | 398 |
| Eco24I | GRGCYC | 1 cut(s) | 607 |
| Eco47I | GGWCC | 1 cut(s) | 269 |
| Eco53kI | GAGCTC | 1 cut(s) | 605 |
| Eco57I | CTGAAG | 3 cut(s) | 69, 558, 762 |
| Eco88I | CYCGRG | 1 cut(s) | 210 |
| EcoICRI | GAGCTC | 1 cut(s) | 605 |
| EcoO109I | RGGNCCY | 1 cut(s) | 269 |
| EcoRI | GAATTC | 1 cut(s) | 999 |
| EcoRII | CCWGG | 2 cut(s) | 262, 350 |
| EcoT14I | CCWWGG | 1 cut(s) | 828 |
| EcoT22I | ATGCAT | 1 cut(s) | 693 |
| EcoT38I | GRGCYC | 1 cut(s) | 607 |
| ErhI | CCWWGG | 1 cut(s) | 828 |
| FaeI | CATG | 4 cut(s) | 105, 373, 411, 749 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 667, 699 |
| FaqI | GGGAC | 2 cut(s) | 351, 611 |
| FatI | CATG | 4 cut(s) | 101, 369, 407, 745 |
| FauI | CCCGC | 1 cut(s) | 671 |
| FbaI | TGATCA | 1 cut(s) | 223 |
| FblI | GTMKAC | 1 cut(s) | 344 |
| FokI | GGATG | 1 cut(s) | 854 |
| FriOI | GRGCYC | 1 cut(s) | 607 |
| GlaI | GCGC | 2 cut(s) | 21, 680 |
| GsaI | CCCAGC | 1 cut(s) | 927 |
| HaeII | RGCGCY | 1 cut(s) | 682 |
| HaeIII | GGCC | 5 cut(s) | 184, 355, 398, 467, 554 |
| HapII | CCGG | 2 cut(s) | 249, 902 |
| HhaI | GCGC | 2 cut(s) | 22, 681 |
| Hin1II | CATG | 4 cut(s) | 105, 373, 411, 749 |
| Hin6I | GCGC | 2 cut(s) | 20, 679 |
| HinP1I | GCGC | 2 cut(s) | 20, 679 |
| HincII | GTYRAC | 2 cut(s) | 345, 480 |
| HindII | GTYRAC | 2 cut(s) | 345, 480 |
| HinfI | GANTC | 1 cut(s) | 883 |
| HpaII | CCGG | 2 cut(s) | 249, 902 |
| Hpy166II | GTNNAC | 4 cut(s) | 236, 345, 480, 621 |
| Hpy188I | TCNGA | 4 cut(s) | 123, 223, 781, 838 |
| Hpy188III | TCNNGA | 2 cut(s) | 77, 581 |
| Hpy8I | GTNNAC | 4 cut(s) | 236, 345, 480, 621 |
| Hpy99I | CGWCG | 2 cut(s) | 141, 891 |
| HpyCH4III | ACNGT | 2 cut(s) | 197, 433 |
| HpyCH4IV | ACGT | 1 cut(s) | 889 |
| HpyCH4V | TGCA | 5 cut(s) | 548, 691, 813, 875, 960 |
| HpyF3I | CTNAG | 3 cut(s) | 474, 624, 837 |
| HpySE526I | ACGT | 1 cut(s) | 889 |
| Hsp92II | CATG | 4 cut(s) | 105, 373, 411, 749 |
| HspAI | GCGC | 2 cut(s) | 20, 679 |
| Ksp22I | TGATCA | 1 cut(s) | 223 |
| Kzo9I | GATC | 3 cut(s) | 145, 223, 724 |
| LguI | GCTCTTC | 2 cut(s) | 210, 688 |
| LmnI | GCTCC | 3 cut(s) | 155, 793, 910 |
| LweI | GCATC | 2 cut(s) | 369, 586 |
| MaeII | ACGT | 1 cut(s) | 889 |
| MalI | GATC | 3 cut(s) | 147, 225, 726 |
| MboI | GATC | 3 cut(s) | 145, 223, 724 |
| MboII | GAAGA | 5 cut(s) | 197, 303, 675, 707, 890 |
| MhlI | GDGCHC | 1 cut(s) | 607 |
| MlsI | TGGCCA | 1 cut(s) | 184 |
| MluCI | AATT | 7 cut(s) | 334, 389, 643, 847, 961, 978, 999 |
| MluNI | TGGCCA | 1 cut(s) | 184 |
| MmeI | TCCRAC | 2 cut(s) | 101, 996 |
| MnlI | CCTC | 9 cut(s) | 28, 110, 169, 526, 577, 588, 619, 832, 835 |
| Mox20I | TGGCCA | 1 cut(s) | 184 |
| Mph1103I | ATGCAT | 1 cut(s) | 693 |
| MroXI | GAANNNNTTC | 1 cut(s) | 882 |
| MscI | TGGCCA | 1 cut(s) | 184 |
| MseI | TTAA | 6 cut(s) | 392, 414, 525, 564, 573, 1018 |
| MslI | CAYNNNNRTG | 1 cut(s) | 374 |
| Msp20I | TGGCCA | 1 cut(s) | 184 |
| MspA1I | CMGCKG | 1 cut(s) | 359 |
| MspCI | CTTAAG | 1 cut(s) | 413 |
| MspI | CCGG | 2 cut(s) | 249, 902 |
| MspR9I | CCNGG | 3 cut(s) | 264, 352, 902 |
| MvaI | CCWGG | 2 cut(s) | 264, 352 |
| MvnI | CGCG | 1 cut(s) | 22 |
| NciI | CCSGG | 1 cut(s) | 902 |
| NdeII | GATC | 3 cut(s) | 145, 223, 724 |
| NlaIII | CATG | 4 cut(s) | 105, 373, 411, 749 |
| NlaIV | GGNNCC | 3 cut(s) | 270, 468, 906 |
| NsiI | ATGCAT | 1 cut(s) | 693 |
| PceI | AGGCCT | 1 cut(s) | 398 |
| PciSI | GCTCTTC | 2 cut(s) | 210, 688 |
| PdmI | GAANNNNTTC | 1 cut(s) | 882 |
| PfeI | GAWTC | 1 cut(s) | 883 |
| PpuMI | RGGWCCY | 1 cut(s) | 269 |
| PsiI | TTATAA | 1 cut(s) | 762 |
| Psp124BI | GAGCTC | 1 cut(s) | 607 |
| Psp5II | RGGWCCY | 1 cut(s) | 269 |
| Psp6I | CCWGG | 2 cut(s) | 262, 350 |
| PspFI | CCCAGC | 1 cut(s) | 923 |
| PspGI | CCWGG | 2 cut(s) | 262, 350 |
| PspN4I | GGNNCC | 3 cut(s) | 270, 468, 906 |
| PspPI | GGNCC | 2 cut(s) | 269, 466 |
| PspPPI | RGGWCCY | 1 cut(s) | 269 |
| PstI | CTGCAG | 1 cut(s) | 877 |
| PvuII | CAGCTG | 1 cut(s) | 359 |
| RsaI | GTAC | 1 cut(s) | 261 |
| RsaNI | GTAC | 1 cut(s) | 260 |
| RseI | CAYNNNNRTG | 1 cut(s) | 374 |
| SacI | GAGCTC | 1 cut(s) | 607 |
| SalI | GTCGAC | 1 cut(s) | 343 |
| SapI | GCTCTTC | 2 cut(s) | 210, 688 |
| SaqAI | TTAA | 6 cut(s) | 392, 414, 525, 564, 573, 1018 |
| Sau3AI | GATC | 3 cut(s) | 145, 223, 724 |
| Sau96I | GGNCC | 2 cut(s) | 269, 466 |
| ScrFI | CCNGG | 3 cut(s) | 264, 352, 902 |
| SduI | GDGCHC | 1 cut(s) | 607 |
| SetI | ASST | 8 cut(s) | 121, 205, 280, 361, 607, 705, 819, 892 |
| SfaNI | GCATC | 2 cut(s) | 369, 586 |
| SfcI | CTRYAG | 1 cut(s) | 873 |
| SinI | GGWCC | 1 cut(s) | 269 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 374 |
| SmlI | CTYRAG | 1 cut(s) | 413 |
| SmoI | CTYRAG | 1 cut(s) | 413 |
| Sse9I | AATT | 7 cut(s) | 334, 389, 643, 847, 961, 978, 999 |
| SseBI | AGGCCT | 1 cut(s) | 398 |
| SsiI | CCGC | 2 cut(s) | 569, 664 |
| SstI | GAGCTC | 1 cut(s) | 607 |
| StuI | AGGCCT | 1 cut(s) | 398 |
| StyD4I | CCNGG | 3 cut(s) | 262, 350, 900 |
| StyI | CCWWGG | 1 cut(s) | 828 |
| TaaI | ACNGT | 2 cut(s) | 197, 433 |
| TaiI | ACGT | 1 cut(s) | 892 |
| TaqI | TCGA | 2 cut(s) | 344, 886 |
| TasI | AATT | 7 cut(s) | 334, 389, 643, 847, 961, 978, 999 |
| TfiI | GAWTC | 1 cut(s) | 883 |
| Tru1I | TTAA | 6 cut(s) | 392, 414, 525, 564, 573, 1018 |
| Tru9I | TTAA | 6 cut(s) | 392, 414, 525, 564, 573, 1018 |
| TscAI | CASTG | 1 cut(s) | 877 |
| TspDTI | ATGAA | 4 cut(s) | 15, 17, 437, 999 |
| TspRI | CASTG | 1 cut(s) | 877 |
| Vha464I | CTTAAG | 1 cut(s) | 413 |
| VpaK11BI | GGWCC | 1 cut(s) | 269 |
| XapI | RAATTY | 2 cut(s) | 643, 999 |
| XmiI | GTMKAC | 1 cut(s) | 344 |
| XmnI | GAANNNNTTC | 1 cut(s) | 882 |
| Zsp2I | ATGCAT | 1 cut(s) | 693 |