ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 255 |
| AccII | CGCG | 1 cut(s) | 146 |
| AciI | CCGC | 5 cut(s) | 178, 413, 486, 614, 1004 |
| AclWI | GGATC | 1 cut(s) | 257 |
| AcsI | RAATTY | 3 cut(s) | 523, 597, 788 |
| AcyI | GRCGYC | 3 cut(s) | 67, 223, 617 |
| AfeI | AGCGCT | 1 cut(s) | 1017 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 174, 255, 583, 584, 589, 860 |
| AflIII | ACRYGT | 1 cut(s) | 252 |
| AgsI | TTSAA | 3 cut(s) | 77, 109, 683 |
| AjnI | CCWGG | 2 cut(s) | 340, 354 |
| AleI | CACNNNNGTG | 1 cut(s) | 251 |
| AluBI | AGCT | 8 cut(s) | 44, 53, 161, 373, 553, 672, 740, 986 |
| AluI | AGCT | 8 cut(s) | 44, 53, 161, 373, 553, 672, 740, 986 |
| Alw21I | GWGCWC | 1 cut(s) | 375 |
| Alw26I | GTCTC | 1 cut(s) | 930 |
| AlwI | GGATC | 1 cut(s) | 257 |
| Ama87I | CYCGRG | 1 cut(s) | 583 |
| Aor51HI | AGCGCT | 1 cut(s) | 1017 |
| AoxI | GGCC | 1 cut(s) | 573 |
| ApeKI | GCWGC | 3 cut(s) | 713, 983, 1018 |
| ApoI | RAATTY | 3 cut(s) | 523, 597, 788 |
| AseI | ATTAAT | 1 cut(s) | 312 |
| AspLEI | GCGC | 1 cut(s) | 1018 |
| AspS9I | GGNCC | 2 cut(s) | 574, 580 |
| AsuC2I | CCSGG | 3 cut(s) | 578, 584, 585 |
| AsuHPI | GGTGA | 3 cut(s) | 466, 467, 530 |
| AvaI | CYCGRG | 1 cut(s) | 583 |
| AvaII | GGWCC | 1 cut(s) | 580 |
| BanII | GRGCYC | 1 cut(s) | 375 |
| Bbv12I | GWGCWC | 1 cut(s) | 375 |
| BbvI | GCAGC | 3 cut(s) | 700, 995, 1005 |
| BccI | CCATC | 6 cut(s) | 57, 172, 230, 640, 775, 837 |
| BciT130I | CCWGG | 2 cut(s) | 342, 356 |
| BclI | TGATCA | 1 cut(s) | 436 |
| BcnI | CCSGG | 3 cut(s) | 578, 584, 585 |
| BcoDI | GTCTC | 1 cut(s) | 930 |
| BfaI | CTAG | 4 cut(s) | 41, 306, 543, 1033 |
| BfmI | CTRYAG | 4 cut(s) | 206, 365, 858, 981 |
| BfoI | RGCGCY | 1 cut(s) | 1019 |
| BglII | AGATCT | 1 cut(s) | 399 |
| BisI | GCNGC | 4 cut(s) | 615, 714, 984, 1019 |
| BlpI | GCTNAGC | 1 cut(s) | 549 |
| BlsI | GCNGC | 4 cut(s) | 616, 715, 985, 1020 |
| Bme1390I | CCNGG | 5 cut(s) | 342, 356, 578, 584, 585 |
| Bme18I | GGWCC | 1 cut(s) | 580 |
| BmeT110I | CYCGRG | 1 cut(s) | 583 |
| BmgT120I | GGNCC | 2 cut(s) | 574, 580 |
| BmiI | GGNNCC | 4 cut(s) | 353, 560, 576, 582 |
| BmrFI | CCNGG | 5 cut(s) | 342, 356, 578, 584, 585 |
| BmsI | GCATC | 2 cut(s) | 830, 874 |
| BpmI | CTGGAG | 1 cut(s) | 324 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 549 |
| BpuMI | CCSGG | 3 cut(s) | 578, 584, 585 |
| BsaHI | GRCGYC | 3 cut(s) | 67, 223, 617 |
| BsaJI | CCNNGG | 4 cut(s) | 266, 576, 583, 584 |
| BsaWI | WCCGGW | 1 cut(s) | 561 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 901, 931 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 174, 255, 583, 584, 589, 860 |
| Bse1I | ACTGG | 1 cut(s) | 1014 |
| Bse3DI | GCAATG | 1 cut(s) | 904 |
| BseBI | CCWGG | 2 cut(s) | 342, 356 |
| BseDI | CCNNGG | 4 cut(s) | 266, 576, 583, 584 |
| BseGI | GGATG | 4 cut(s) | 68, 164, 241, 889 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 174, 255, 583, 584, 589, 860 |
| BseMI | GCAATG | 1 cut(s) | 904 |
| BseMII | CTCAG | 2 cut(s) | 540, 764 |
| BseNI | ACTGG | 1 cut(s) | 1014 |
| BseXI | GCAGC | 3 cut(s) | 700, 995, 1005 |
| Bsh1236I | CGCG | 1 cut(s) | 146 |
| BshFI | GGCC | 1 cut(s) | 575 |
| BsiHKAI | GWGCWC | 1 cut(s) | 375 |
| BsiHKCI | CYCGRG | 1 cut(s) | 583 |
| BsiSI | CCGG | 3 cut(s) | 562, 578, 584 |
| BslFI | GGGAC | 3 cut(s) | 155, 566, 739 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 174, 255, 583, 584, 589, 860 |
| BsmAI | GTCTC | 1 cut(s) | 930 |
| BsmFI | GGGAC | 3 cut(s) | 155, 566, 739 |
| BsmI | GAATGC | 1 cut(s) | 183 |
| BsnI | GGCC | 1 cut(s) | 575 |
| BsoBI | CYCGRG | 1 cut(s) | 583 |
| Bsp1286I | GDGCHC | 1 cut(s) | 375 |
| Bsp143I | GATC | 4 cut(s) | 79, 262, 399, 436 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 549 |
| BspACI | CCGC | 5 cut(s) | 178, 413, 486, 614, 1004 |
| BspANI | GGCC | 1 cut(s) | 575 |
| BspCNI | CTCAG | 2 cut(s) | 541, 763 |
| BspFNI | CGCG | 1 cut(s) | 146 |
| BspHI | TCATGA | 1 cut(s) | 82 |
| BspLI | GGNNCC | 4 cut(s) | 353, 560, 576, 582 |
| BspMAI | CTGCAG | 1 cut(s) | 985 |
| BspPI | GGATC | 1 cut(s) | 257 |
| BspQI | GCTCTTC | 2 cut(s) | 380, 414 |
| BsrDI | GCAATG | 1 cut(s) | 904 |
| BsrI | ACTGG | 1 cut(s) | 1014 |
| BssECI | CCNNGG | 4 cut(s) | 266, 576, 583, 584 |
| BssMI | GATC | 4 cut(s) | 79, 262, 399, 436 |
| BssNI | GRCGYC | 3 cut(s) | 67, 223, 617 |
| BssT1I | CCWWGG | 1 cut(s) | 266 |
| Bst2UI | CCWGG | 2 cut(s) | 342, 356 |
| Bst4CI | ACNGT | 1 cut(s) | 478 |
| Bst6I | CTCTTC | 2 cut(s) | 380, 414 |
| BstACI | GRCGYC | 3 cut(s) | 67, 223, 617 |
| BstC8I | GCNNGC | 4 cut(s) | 533, 573, 670, 1002 |
| BstDEI | CTNAG | 3 cut(s) | 416, 549, 750 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 858 |
| BstF5I | GGATG | 4 cut(s) | 68, 164, 241, 889 |
| BstFNI | CGCG | 1 cut(s) | 146 |
| BstH2I | RGCGCY | 1 cut(s) | 1019 |
| BstHHI | GCGC | 1 cut(s) | 1018 |
| BstKTI | GATC | 4 cut(s) | 82, 265, 402, 439 |
| BstMAI | GTCTC | 1 cut(s) | 930 |
| BstMBI | GATC | 4 cut(s) | 79, 262, 399, 436 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 50, 992, 1001 |
| BstNI | CCWGG | 2 cut(s) | 342, 356 |
| BstNSI | RCATGY | 2 cut(s) | 535, 1004 |
| BstSCI | CCNGG | 5 cut(s) | 340, 354, 576, 582, 583 |
| BstSFI | CTRYAG | 4 cut(s) | 206, 365, 858, 981 |
| BstUI | CGCG | 1 cut(s) | 146 |
| BstV1I | GCAGC | 3 cut(s) | 700, 995, 1005 |
| BstX2I | RGATCY | 1 cut(s) | 399 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 348 |
| BstYI | RGATCY | 1 cut(s) | 399 |
| BsuRI | GGCC | 1 cut(s) | 575 |
| BtsCI | GGATG | 4 cut(s) | 68, 164, 241, 889 |
| BtsIMutI | CAGTG | 1 cut(s) | 446 |
| Cac8I | GCNNGC | 4 cut(s) | 533, 573, 670, 1002 |
| CciI | TCATGA | 1 cut(s) | 82 |
| CfoI | GCGC | 1 cut(s) | 1018 |
| Cfr13I | GGNCC | 2 cut(s) | 574, 580 |
| Cfr9I | CCCGGG | 1 cut(s) | 583 |
| CseI | GACGC | 4 cut(s) | 56, 152, 212, 606 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 886, 921 |
| CviAII | CATG | 5 cut(s) | 83, 431, 532, 665, 1001 |
| DdeI | CTNAG | 3 cut(s) | 416, 549, 750 |
| DpnI | GATC | 4 cut(s) | 81, 264, 401, 438 |
| DpnII | GATC | 4 cut(s) | 79, 262, 399, 436 |
| Eam1104I | CTCTTC | 2 cut(s) | 380, 414 |
| EarI | CTCTTC | 2 cut(s) | 380, 414 |
| EciI | GGCGGA | 2 cut(s) | 193, 475 |
| Ecl136II | GAGCTC | 1 cut(s) | 373 |
| Eco130I | CCWWGG | 1 cut(s) | 266 |
| Eco24I | GRGCYC | 1 cut(s) | 375 |
| Eco47I | GGWCC | 1 cut(s) | 580 |
| Eco47III | AGCGCT | 1 cut(s) | 1017 |
| Eco53kI | GAGCTC | 1 cut(s) | 373 |
| Eco88I | CYCGRG | 1 cut(s) | 583 |
| EcoICRI | GAGCTC | 1 cut(s) | 373 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 858 |
| EcoO109I | RGGNCCY | 1 cut(s) | 574 |
| EcoRI | GAATTC | 1 cut(s) | 523 |
| EcoRII | CCWGG | 2 cut(s) | 340, 354 |
| EcoT14I | CCWWGG | 1 cut(s) | 266 |
| EcoT22I | ATGCAT | 1 cut(s) | 432 |
| EcoT38I | GRGCYC | 1 cut(s) | 375 |
| ErhI | CCWWGG | 1 cut(s) | 266 |
| FaeI | CATG | 5 cut(s) | 86, 434, 535, 668, 1004 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 455, 487 |
| FaqI | GGGAC | 3 cut(s) | 155, 566, 739 |
| FatI | CATG | 5 cut(s) | 82, 430, 531, 664, 1000 |
| FbaI | TGATCA | 1 cut(s) | 436 |
| Fnu4HI | GCNGC | 4 cut(s) | 615, 714, 984, 1019 |
| FokI | GGATG | 4 cut(s) | 75, 151, 248, 896 |
| FriOI | GRGCYC | 1 cut(s) | 375 |
| Fsp4HI | GCNGC | 4 cut(s) | 615, 714, 984, 1019 |
| FspBI | CTAG | 4 cut(s) | 41, 306, 543, 1033 |
| GlaI | GCGC | 1 cut(s) | 1017 |
| GluI | GCNGC | 4 cut(s) | 615, 714, 984, 1019 |
| GsuI | CTGGAG | 1 cut(s) | 324 |
| HaeII | RGCGCY | 1 cut(s) | 1019 |
| HaeIII | GGCC | 1 cut(s) | 575 |
| HapII | CCGG | 3 cut(s) | 562, 578, 584 |
| HgaI | GACGC | 4 cut(s) | 56, 152, 212, 606 |
| HhaI | GCGC | 1 cut(s) | 1018 |
| Hin1I | GRCGYC | 3 cut(s) | 67, 223, 617 |
| Hin1II | CATG | 5 cut(s) | 86, 434, 535, 668, 1004 |
| Hin6I | GCGC | 1 cut(s) | 1016 |
| HinP1I | GCGC | 1 cut(s) | 1016 |
| HinfI | GANTC | 2 cut(s) | 86, 640 |
| HpaII | CCGG | 3 cut(s) | 562, 578, 584 |
| HphI | GGTGA | 3 cut(s) | 466, 467, 530 |
| Hpy166II | GTNNAC | 2 cut(s) | 246, 258 |
| Hpy188I | TCNGA | 3 cut(s) | 189, 325, 639 |
| Hpy188III | TCNNGA | 3 cut(s) | 77, 83, 935 |
| Hpy8I | GTNNAC | 2 cut(s) | 246, 258 |
| HpyAV | CCTTC | 4 cut(s) | 103, 142, 457, 583 |
| HpyCH4III | ACNGT | 1 cut(s) | 478 |
| HpyCH4IV | ACGT | 1 cut(s) | 252 |
| HpyCH4V | TGCA | 7 cut(s) | 430, 609, 668, 716, 821, 887, 983 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 50, 992, 1001 |
| HpyF3I | CTNAG | 3 cut(s) | 416, 549, 750 |
| HpySE526I | ACGT | 1 cut(s) | 252 |
| Hsp92I | GRCGYC | 3 cut(s) | 67, 223, 617 |
| Hsp92II | CATG | 5 cut(s) | 86, 434, 535, 668, 1004 |
| HspAI | GCGC | 1 cut(s) | 1016 |
| Ksp22I | TGATCA | 1 cut(s) | 436 |
| Kzo9I | GATC | 4 cut(s) | 79, 262, 399, 436 |
| LguI | GCTCTTC | 2 cut(s) | 380, 414 |
| LmnI | GCTCC | 4 cut(s) | 166, 180, 370, 665 |
| Lsp1109I | GCAGC | 3 cut(s) | 700, 995, 1005 |
| LweI | GCATC | 2 cut(s) | 830, 874 |
| MaeI | CTAG | 4 cut(s) | 41, 306, 543, 1033 |
| MaeII | ACGT | 1 cut(s) | 252 |
| MalI | GATC | 4 cut(s) | 81, 264, 401, 438 |
| MboI | GATC | 4 cut(s) | 79, 262, 399, 436 |
| MboII | GAAGA | 7 cut(s) | 367, 401, 620, 671, 801, 859, 981 |
| MfeI | CAATTG | 1 cut(s) | 683 |
| MflI | RGATCY | 1 cut(s) | 399 |
| MhlI | GDGCHC | 1 cut(s) | 375 |
| MluCI | AATT | 7 cut(s) | 72, 133, 309, 523, 597, 683, 788 |
| MlyI | GAGTC | 2 cut(s) | 95, 649 |
| MnlI | CCTC | 6 cut(s) | 274, 461, 718, 778, 864, 953 |
| Mph1103I | ATGCAT | 1 cut(s) | 432 |
| MseI | TTAA | 4 cut(s) | 36, 312, 594, 792 |
| MslI | CAYNNNNRTG | 1 cut(s) | 251 |
| MspI | CCGG | 3 cut(s) | 562, 578, 584 |
| MspR9I | CCNGG | 5 cut(s) | 342, 356, 578, 584, 585 |
| MunI | CAATTG | 1 cut(s) | 683 |
| Mva1269I | GAATGC | 1 cut(s) | 183 |
| MvaI | CCWGG | 2 cut(s) | 342, 356 |
| MvnI | CGCG | 1 cut(s) | 146 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 50, 992, 1001 |
| NciI | CCSGG | 3 cut(s) | 578, 584, 585 |
| NdeII | GATC | 4 cut(s) | 79, 262, 399, 436 |
| NlaIII | CATG | 5 cut(s) | 86, 434, 535, 668, 1004 |
| NlaIV | GGNNCC | 4 cut(s) | 353, 560, 576, 582 |
| NmeAIII | GCCGAG | 1 cut(s) | 976 |
| NsiI | ATGCAT | 1 cut(s) | 432 |
| NspI | RCATGY | 2 cut(s) | 535, 1004 |
| OliI | CACNNNNGTG | 1 cut(s) | 251 |
| PaeI | GCATGC | 2 cut(s) | 535, 1004 |
| PagI | TCATGA | 1 cut(s) | 82 |
| PciSI | GCTCTTC | 2 cut(s) | 380, 414 |
| PctI | GAATGC | 1 cut(s) | 183 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 255 |
| PkrI | GCNGC | 4 cut(s) | 616, 715, 985, 1020 |
| PleI | GAGTC | 2 cut(s) | 94, 648 |
| PpsI | GAGTC | 2 cut(s) | 94, 648 |
| PshBI | ATTAAT | 1 cut(s) | 312 |
| Psp124BI | GAGCTC | 1 cut(s) | 375 |
| Psp6I | CCWGG | 2 cut(s) | 340, 354 |
| PspGI | CCWGG | 2 cut(s) | 340, 354 |
| PspN4I | GGNNCC | 4 cut(s) | 353, 560, 576, 582 |
| PspPI | GGNCC | 2 cut(s) | 574, 580 |
| PstI | CTGCAG | 1 cut(s) | 985 |
| PsuI | RGATCY | 1 cut(s) | 399 |
| RseI | CAYNNNNRTG | 1 cut(s) | 251 |
| SacI | GAGCTC | 1 cut(s) | 375 |
| SapI | GCTCTTC | 2 cut(s) | 380, 414 |
| SaqAI | TTAA | 4 cut(s) | 36, 312, 594, 792 |
| SatI | GCNGC | 4 cut(s) | 615, 714, 984, 1019 |
| Sau3AI | GATC | 4 cut(s) | 79, 262, 399, 436 |
| Sau96I | GGNCC | 2 cut(s) | 574, 580 |
| SchI | GAGTC | 2 cut(s) | 95, 649 |
| ScrFI | CCNGG | 5 cut(s) | 342, 356, 578, 584, 585 |
| SduI | GDGCHC | 1 cut(s) | 375 |
| SfaNI | GCATC | 2 cut(s) | 830, 874 |
| SfcI | CTRYAG | 4 cut(s) | 206, 365, 858, 981 |
| SinI | GGWCC | 1 cut(s) | 580 |
| SmaI | CCCGGG | 1 cut(s) | 585 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 251 |
| SphI | GCATGC | 2 cut(s) | 535, 1004 |
| Sse9I | AATT | 7 cut(s) | 72, 133, 309, 523, 597, 683, 788 |
| SsiI | CCGC | 5 cut(s) | 178, 413, 486, 614, 1004 |
| SspI | AATATT | 2 cut(s) | 625, 694 |
| SspMI | CTAG | 4 cut(s) | 41, 306, 543, 1033 |
| SstI | GAGCTC | 1 cut(s) | 375 |
| StyD4I | CCNGG | 5 cut(s) | 340, 354, 576, 582, 583 |
| StyI | CCWWGG | 1 cut(s) | 266 |
| TaaI | ACNGT | 1 cut(s) | 478 |
| TaiI | ACGT | 1 cut(s) | 255 |
| TaqI | TCGA | 1 cut(s) | 934 |
| TasI | AATT | 7 cut(s) | 72, 133, 309, 523, 597, 683, 788 |
| TauI | GCSGC | 1 cut(s) | 617 |
| Tru1I | TTAA | 4 cut(s) | 36, 312, 594, 792 |
| Tru9I | TTAA | 4 cut(s) | 36, 312, 594, 792 |
| TscAI | CASTG | 1 cut(s) | 446 |
| TseI | GCWGC | 3 cut(s) | 713, 983, 1018 |
| TspDTI | ATGAA | 1 cut(s) | 795 |
| TspMI | CCCGGG | 1 cut(s) | 583 |
| TspRI | CASTG | 1 cut(s) | 446 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 255 |
| VpaK11BI | GGWCC | 1 cut(s) | 580 |
| VspI | ATTAAT | 1 cut(s) | 312 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 858 |
| XapI | RAATTY | 3 cut(s) | 523, 597, 788 |
| XceI | RCATGY | 2 cut(s) | 535, 1004 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 171 |
| XmaI | CCCGGG | 1 cut(s) | 583 |
| XspI | CTAG | 4 cut(s) | 41, 306, 543, 1033 |
| Zsp2I | ATGCAT | 1 cut(s) | 432 |