ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 4 - 198 | 1.4e-24 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 274 |
| AciI | CCGC | 1 cut(s) | 404 |
| AclWI | GGATC | 1 cut(s) | 386 |
| AcuI | CTGAAG | 1 cut(s) | 146 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 274, 673 |
| AgsI | TTSAA | 5 cut(s) | 46, 250, 322, 580, 808 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 572, 604 |
| AluBI | AGCT | 5 cut(s) | 32, 119, 431, 508, 816 |
| AluI | AGCT | 5 cut(s) | 32, 119, 431, 508, 816 |
| Alw21I | GWGCWC | 2 cut(s) | 373, 522 |
| Alw26I | GTCTC | 3 cut(s) | 422, 638, 730 |
| AlwI | GGATC | 1 cut(s) | 386 |
| ApeKI | GCWGC | 4 cut(s) | 501, 605, 687, 813 |
| AsuHPI | GGTGA | 2 cut(s) | 401, 766 |
| BanII | GRGCYC | 1 cut(s) | 349 |
| Bbv12I | GWGCWC | 2 cut(s) | 373, 522 |
| BbvI | GCAGC | 3 cut(s) | 488, 592, 699 |
| BccI | CCATC | 1 cut(s) | 770 |
| BcoDI | GTCTC | 3 cut(s) | 422, 638, 730 |
| BfaI | CTAG | 1 cut(s) | 29 |
| BfmI | CTRYAG | 1 cut(s) | 547 |
| BisI | GCNGC | 4 cut(s) | 502, 606, 688, 814 |
| BlsI | GCNGC | 4 cut(s) | 503, 607, 689, 815 |
| BmiI | GGNNCC | 1 cut(s) | 348 |
| BmsI | GCATC | 3 cut(s) | 222, 705, 807 |
| BoxI | GACNNNNGTC | 1 cut(s) | 15 |
| BpmI | CTGGAG | 3 cut(s) | 90, 296, 772 |
| Bpu10I | CCTNAGC | 1 cut(s) | 231 |
| BsaJI | CCNNGG | 1 cut(s) | 352 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 274, 673 |
| Bse1I | ACTGG | 2 cut(s) | 637, 755 |
| BseDI | CCNNGG | 1 cut(s) | 352 |
| BseGI | GGATG | 2 cut(s) | 563, 798 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 274, 673 |
| BseNI | ACTGG | 2 cut(s) | 637, 755 |
| BseXI | GCAGC | 3 cut(s) | 488, 592, 699 |
| BsgI | GTGCAG | 1 cut(s) | 706 |
| BsiHKAI | GWGCWC | 2 cut(s) | 373, 522 |
| BslFI | GGGAC | 1 cut(s) | 456 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 274, 673 |
| BsmAI | GTCTC | 3 cut(s) | 422, 638, 730 |
| BsmFI | GGGAC | 1 cut(s) | 456 |
| Bsp1286I | GDGCHC | 3 cut(s) | 349, 373, 522 |
| Bsp143I | GATC | 4 cut(s) | 3, 48, 60, 391 |
| Bsp19I | CCATGG | 1 cut(s) | 352 |
| BspACI | CCGC | 1 cut(s) | 404 |
| BspLI | GGNNCC | 1 cut(s) | 348 |
| BspMAI | CTGCAG | 1 cut(s) | 551 |
| BspPI | GGATC | 1 cut(s) | 386 |
| BsrI | ACTGG | 2 cut(s) | 637, 755 |
| BssECI | CCNNGG | 1 cut(s) | 352 |
| BssMI | GATC | 4 cut(s) | 3, 48, 60, 391 |
| BssT1I | CCWWGG | 1 cut(s) | 352 |
| Bst4CI | ACNGT | 1 cut(s) | 300 |
| Bst6I | CTCTTC | 2 cut(s) | 298, 466 |
| BstC8I | GCNNGC | 2 cut(s) | 373, 506 |
| BstDEI | CTNAG | 2 cut(s) | 231, 434 |
| BstDSI | CCRYGG | 1 cut(s) | 352 |
| BstF5I | GGATG | 2 cut(s) | 563, 798 |
| BstKTI | GATC | 4 cut(s) | 6, 51, 63, 394 |
| BstMAI | GTCTC | 3 cut(s) | 422, 638, 730 |
| BstMBI | GATC | 4 cut(s) | 3, 48, 60, 391 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 693 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 15 |
| BstSFI | CTRYAG | 1 cut(s) | 547 |
| BstV1I | GCAGC | 3 cut(s) | 488, 592, 699 |
| BtgI | CCRYGG | 1 cut(s) | 352 |
| BtsCI | GGATG | 2 cut(s) | 563, 798 |
| Cac8I | GCNNGC | 2 cut(s) | 373, 506 |
| CviAII | CATG | 3 cut(s) | 64, 353, 515 |
| CviJI | RGCY | 9 cut(s) | 32, 68, 119, 236, 347, 431, 501, 508, 816 |
| CviKI_1 | RGCY | 9 cut(s) | 32, 68, 119, 236, 347, 431, 501, 508, 816 |
| DdeI | CTNAG | 2 cut(s) | 231, 434 |
| DpnI | GATC | 4 cut(s) | 5, 50, 62, 393 |
| DpnII | GATC | 4 cut(s) | 3, 48, 60, 391 |
| Eam1104I | CTCTTC | 2 cut(s) | 298, 466 |
| EarI | CTCTTC | 2 cut(s) | 298, 466 |
| Eco130I | CCWWGG | 1 cut(s) | 352 |
| Eco24I | GRGCYC | 1 cut(s) | 349 |
| Eco57I | CTGAAG | 1 cut(s) | 146 |
| EcoT14I | CCWWGG | 1 cut(s) | 352 |
| EcoT38I | GRGCYC | 1 cut(s) | 349 |
| ErhI | CCWWGG | 1 cut(s) | 352 |
| FaeI | CATG | 3 cut(s) | 67, 356, 518 |
| FaqI | GGGAC | 1 cut(s) | 456 |
| FatI | CATG | 3 cut(s) | 63, 352, 514 |
| FauI | CCCGC | 1 cut(s) | 411 |
| Fnu4HI | GCNGC | 4 cut(s) | 502, 606, 688, 814 |
| FokI | GGATG | 2 cut(s) | 550, 785 |
| FriOI | GRGCYC | 1 cut(s) | 349 |
| Fsp4HI | GCNGC | 4 cut(s) | 502, 606, 688, 814 |
| FspBI | CTAG | 1 cut(s) | 29 |
| GluI | GCNGC | 4 cut(s) | 502, 606, 688, 814 |
| GsuI | CTGGAG | 3 cut(s) | 90, 296, 772 |
| Hin1II | CATG | 3 cut(s) | 67, 356, 518 |
| HincII | GTYRAC | 1 cut(s) | 625 |
| HindII | GTYRAC | 1 cut(s) | 625 |
| HindIII | AAGCTT | 1 cut(s) | 506 |
| HinfI | GANTC | 3 cut(s) | 79, 593, 758 |
| HpaI | GTTAAC | 1 cut(s) | 625 |
| HphI | GGTGA | 2 cut(s) | 401, 766 |
| Hpy166II | GTNNAC | 2 cut(s) | 341, 625 |
| Hpy188I | TCNGA | 5 cut(s) | 10, 57, 126, 166, 701 |
| Hpy188III | TCNNGA | 5 cut(s) | 46, 107, 275, 322, 468 |
| Hpy8I | GTNNAC | 2 cut(s) | 341, 625 |
| HpyAV | CCTTC | 2 cut(s) | 121, 272 |
| HpyCH4III | ACNGT | 1 cut(s) | 300 |
| HpyCH4V | TGCA | 7 cut(s) | 143, 150, 504, 549, 687, 792, 798 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 693 |
| HpyF3I | CTNAG | 2 cut(s) | 231, 434 |
| Hsp92II | CATG | 3 cut(s) | 67, 356, 518 |
| KspAI | GTTAAC | 1 cut(s) | 625 |
| Kzo9I | GATC | 4 cut(s) | 3, 48, 60, 391 |
| LmnI | GCTCC | 2 cut(s) | 277, 352 |
| LpnPI | CCDG | 9 cut(s) | 120, 260, 289, 361, 371, 453, 650, 658, 736 |
| Lsp1109I | GCAGC | 3 cut(s) | 488, 592, 699 |
| LweI | GCATC | 3 cut(s) | 222, 705, 807 |
| MaeI | CTAG | 1 cut(s) | 29 |
| MalI | GATC | 4 cut(s) | 5, 50, 62, 393 |
| MboI | GATC | 4 cut(s) | 3, 48, 60, 391 |
| MboII | GAAGA | 6 cut(s) | 70, 285, 352, 456, 483, 763 |
| MfeI | CAATTG | 1 cut(s) | 617 |
| MhlI | GDGCHC | 3 cut(s) | 349, 373, 522 |
| MlyI | GAGTC | 2 cut(s) | 88, 587 |
| MmeI | TCCRAC | 1 cut(s) | 621 |
| MnlI | CCTC | 5 cut(s) | 160, 405, 418, 491, 545 |
| MseI | TTAA | 4 cut(s) | 174, 570, 624, 780 |
| MunI | CAATTG | 1 cut(s) | 617 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 693 |
| NcoI | CCATGG | 1 cut(s) | 352 |
| NdeII | GATC | 4 cut(s) | 3, 48, 60, 391 |
| NlaIII | CATG | 3 cut(s) | 67, 356, 518 |
| NlaIV | GGNNCC | 1 cut(s) | 348 |
| PfeI | GAWTC | 1 cut(s) | 758 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 274 |
| PkrI | GCNGC | 4 cut(s) | 503, 607, 689, 815 |
| PleI | GAGTC | 2 cut(s) | 87, 587 |
| PpsI | GAGTC | 2 cut(s) | 87, 587 |
| PshAI | GACNNNNGTC | 1 cut(s) | 15 |
| PspN4I | GGNNCC | 1 cut(s) | 348 |
| PstI | CTGCAG | 1 cut(s) | 551 |
| SaqAI | TTAA | 4 cut(s) | 174, 570, 624, 780 |
| SatI | GCNGC | 4 cut(s) | 502, 606, 688, 814 |
| Sau3AI | GATC | 4 cut(s) | 3, 48, 60, 391 |
| SchI | GAGTC | 2 cut(s) | 88, 587 |
| SduI | GDGCHC | 3 cut(s) | 349, 373, 522 |
| SetI | ASST | 8 cut(s) | 34, 121, 222, 433, 510, 556, 790, 818 |
| SfaNI | GCATC | 3 cut(s) | 222, 705, 807 |
| SfcI | CTRYAG | 1 cut(s) | 547 |
| SsiI | CCGC | 1 cut(s) | 404 |
| SspMI | CTAG | 1 cut(s) | 29 |
| StyI | CCWWGG | 1 cut(s) | 352 |
| TaaI | ACNGT | 1 cut(s) | 300 |
| TfiI | GAWTC | 1 cut(s) | 758 |
| Tru1I | TTAA | 4 cut(s) | 174, 570, 624, 780 |
| Tru9I | TTAA | 4 cut(s) | 174, 570, 624, 780 |
| TseI | GCWGC | 4 cut(s) | 501, 605, 687, 813 |
| TspDTI | ATGAA | 3 cut(s) | 305, 529, 552 |
| TspGWI | ACGGA | 1 cut(s) | 109 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 274 |
| XspI | CTAG | 1 cut(s) | 29 |