ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 308 |
| AcsI | RAATTY | 2 cut(s) | 115, 549 |
| AcuI | CTGAAG | 1 cut(s) | 205 |
| AfaI | GTAC | 2 cut(s) | 7, 68 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 38, 54 |
| AgsI | TTSAA | 4 cut(s) | 115, 355, 479, 521 |
| AhlI | ACTAGT | 1 cut(s) | 265 |
| AjnI | CCWGG | 2 cut(s) | 53, 359 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 488, 520 |
| AleI | CACNNNNGTG | 1 cut(s) | 378 |
| AluBI | AGCT | 4 cut(s) | 155, 196, 234, 416 |
| AluI | AGCT | 4 cut(s) | 155, 196, 234, 416 |
| Alw21I | GWGCWC | 3 cut(s) | 287, 340, 375 |
| Alw26I | GTCTC | 1 cut(s) | 219 |
| AoxI | GGCC | 1 cut(s) | 40 |
| ApeKI | GCWGC | 4 cut(s) | 138, 303, 413, 485 |
| ApoI | RAATTY | 2 cut(s) | 115, 549 |
| AspS9I | GGNCC | 1 cut(s) | 57 |
| AsuHPI | GGTGA | 1 cut(s) | 392 |
| AvaII | GGWCC | 1 cut(s) | 57 |
| Bbv12I | GWGCWC | 3 cut(s) | 287, 340, 375 |
| BbvI | GCAGC | 4 cut(s) | 125, 290, 425, 472 |
| BccI | CCATC | 1 cut(s) | 560 |
| BceAI | ACGGC | 1 cut(s) | 474 |
| BciT130I | CCWGG | 2 cut(s) | 55, 361 |
| BciVI | GTATCC | 1 cut(s) | 415 |
| BcoDI | GTCTC | 1 cut(s) | 219 |
| BcuI | ACTAGT | 1 cut(s) | 265 |
| BfaI | CTAG | 3 cut(s) | 23, 266, 546 |
| BfuI | GTATCC | 1 cut(s) | 415 |
| BisI | GCNGC | 4 cut(s) | 139, 304, 414, 486 |
| BlsI | GCNGC | 4 cut(s) | 140, 305, 415, 487 |
| Bme1390I | CCNGG | 2 cut(s) | 55, 361 |
| Bme18I | GGWCC | 1 cut(s) | 57 |
| BmgT120I | GGNCC | 1 cut(s) | 57 |
| BmrFI | CCNGG | 2 cut(s) | 55, 361 |
| BpmI | CTGGAG | 2 cut(s) | 125, 382 |
| BsaI | GGTCTC | 1 cut(s) | 219 |
| BsaJI | CCNNGG | 1 cut(s) | 209 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 314, 344 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 38, 54 |
| BseBI | CCWGG | 2 cut(s) | 55, 361 |
| BseDI | CCNNGG | 1 cut(s) | 209 |
| BseGI | GGATG | 1 cut(s) | 571 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 38, 54 |
| BseMII | CTCAG | 3 cut(s) | 63, 426, 453 |
| BseXI | GCAGC | 4 cut(s) | 125, 290, 425, 472 |
| BsgI | GTGCAG | 1 cut(s) | 124 |
| BshFI | GGCC | 1 cut(s) | 42 |
| BsiHKAI | GWGCWC | 3 cut(s) | 287, 340, 375 |
| BslFI | GGGAC | 1 cut(s) | 551 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 38, 54 |
| BsmAI | GTCTC | 1 cut(s) | 219 |
| BsmFI | GGGAC | 1 cut(s) | 551 |
| BsnI | GGCC | 1 cut(s) | 42 |
| Bso31I | GGTCTC | 1 cut(s) | 219 |
| Bsp1286I | GDGCHC | 3 cut(s) | 287, 340, 375 |
| Bsp143I | GATC | 1 cut(s) | 163 |
| BspACI | CCGC | 1 cut(s) | 308 |
| BspANI | GGCC | 1 cut(s) | 42 |
| BspCNI | CTCAG | 3 cut(s) | 64, 427, 454 |
| BspTNI | GGTCTC | 1 cut(s) | 219 |
| BssECI | CCNNGG | 1 cut(s) | 209 |
| BssMI | GATC | 1 cut(s) | 163 |
| Bst2UI | CCWGG | 2 cut(s) | 55, 361 |
| Bst4CI | ACNGT | 3 cut(s) | 89, 170, 213 |
| Bst6I | CTCTTC | 1 cut(s) | 522 |
| BstC8I | GCNNGC | 3 cut(s) | 198, 308, 336 |
| BstDEI | CTNAG | 3 cut(s) | 72, 435, 462 |
| BstDSI | CCRYGG | 1 cut(s) | 209 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 36 |
| BstF5I | GGATG | 1 cut(s) | 571 |
| BstKTI | GATC | 1 cut(s) | 166 |
| BstMAI | GTCTC | 1 cut(s) | 219 |
| BstMBI | GATC | 1 cut(s) | 163 |
| BstNI | CCWGG | 2 cut(s) | 55, 361 |
| BstNSI | RCATGY | 2 cut(s) | 352, 392 |
| BstSCI | CCNGG | 2 cut(s) | 53, 359 |
| BstV1I | GCAGC | 4 cut(s) | 125, 290, 425, 472 |
| BsuI | GTATCC | 1 cut(s) | 415 |
| BsuRI | GGCC | 1 cut(s) | 42 |
| BtgI | CCRYGG | 1 cut(s) | 209 |
| BtsCI | GGATG | 1 cut(s) | 571 |
| BtsIMutI | CAGTG | 3 cut(s) | 69, 166, 338 |
| Cac8I | GCNNGC | 3 cut(s) | 198, 308, 336 |
| Cfr13I | GGNCC | 1 cut(s) | 57 |
| CsiI | ACCWGGT | 1 cut(s) | 53 |
| Csp6I | GTAC | 2 cut(s) | 6, 67 |
| CviAII | CATG | 3 cut(s) | 186, 349, 389 |
| CviJI | RGCY | 9 cut(s) | 42, 155, 196, 234, 241, 303, 416, 434, 461 |
| CviKI_1 | RGCY | 9 cut(s) | 42, 155, 196, 234, 241, 303, 416, 434, 461 |
| CviQI | GTAC | 2 cut(s) | 6, 67 |
| DdeI | CTNAG | 3 cut(s) | 72, 435, 462 |
| DpnI | GATC | 1 cut(s) | 165 |
| DpnII | GATC | 1 cut(s) | 163 |
| Eam1104I | CTCTTC | 1 cut(s) | 522 |
| EarI | CTCTTC | 1 cut(s) | 522 |
| Eco147I | AGGCCT | 1 cut(s) | 42 |
| Eco31I | GGTCTC | 1 cut(s) | 219 |
| Eco32I | GATATC | 1 cut(s) | 441 |
| Eco47I | GGWCC | 1 cut(s) | 57 |
| Eco57I | CTGAAG | 1 cut(s) | 205 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 36 |
| EcoRI | GAATTC | 2 cut(s) | 115, 549 |
| EcoRII | CCWGG | 2 cut(s) | 53, 359 |
| EcoRV | GATATC | 1 cut(s) | 441 |
| EcoT22I | ATGCAT | 1 cut(s) | 390 |
| FaeI | CATG | 3 cut(s) | 189, 352, 392 |
| FaiI | YATR | 7 cut(s) | 187, 238, 300, 350, 386, 390, 410 |
| FaqI | GGGAC | 1 cut(s) | 551 |
| FatI | CATG | 3 cut(s) | 185, 348, 388 |
| FauI | CCCGC | 1 cut(s) | 315 |
| Fnu4HI | GCNGC | 4 cut(s) | 139, 304, 414, 486 |
| Fsp4HI | GCNGC | 4 cut(s) | 139, 304, 414, 486 |
| FspBI | CTAG | 3 cut(s) | 23, 266, 546 |
| GluI | GCNGC | 4 cut(s) | 139, 304, 414, 486 |
| GsuI | CTGGAG | 2 cut(s) | 125, 382 |
| HaeIII | GGCC | 1 cut(s) | 42 |
| Hin1II | CATG | 3 cut(s) | 189, 352, 392 |
| HindIII | AAGCTT | 1 cut(s) | 232 |
| HinfI | GANTC | 1 cut(s) | 225 |
| HphI | GGTGA | 1 cut(s) | 392 |
| Hpy166II | GTNNAC | 2 cut(s) | 6, 69 |
| Hpy188I | TCNGA | 3 cut(s) | 163, 224, 272 |
| Hpy188III | TCNNGA | 2 cut(s) | 104, 546 |
| Hpy8I | GTNNAC | 2 cut(s) | 6, 69 |
| HpyAV | CCTTC | 1 cut(s) | 229 |
| HpyCH4III | ACNGT | 3 cut(s) | 89, 170, 213 |
| HpyCH4IV | ACGT | 1 cut(s) | 375 |
| HpyCH4V | TGCA | 3 cut(s) | 141, 292, 388 |
| HpyF3I | CTNAG | 3 cut(s) | 72, 435, 462 |
| HpySE526I | ACGT | 1 cut(s) | 375 |
| Hsp92II | CATG | 3 cut(s) | 189, 352, 392 |
| Kzo9I | GATC | 1 cut(s) | 163 |
| LmnI | GCTCC | 1 cut(s) | 363 |
| LpnPI | CCDG | 8 cut(s) | 40, 67, 89, 264, 346, 373, 380, 416 |
| Lsp1109I | GCAGC | 4 cut(s) | 125, 290, 425, 472 |
| MabI | ACCWGGT | 1 cut(s) | 53 |
| MaeI | CTAG | 3 cut(s) | 23, 266, 546 |
| MaeII | ACGT | 1 cut(s) | 375 |
| MaeIII | GTNAC | 1 cut(s) | 259 |
| MalI | GATC | 1 cut(s) | 165 |
| MboI | GATC | 1 cut(s) | 163 |
| MboII | GAAGA | 1 cut(s) | 509 |
| MhlI | GDGCHC | 3 cut(s) | 287, 340, 375 |
| MluCI | AATT | 4 cut(s) | 115, 311, 403, 549 |
| MmeI | TCCRAC | 1 cut(s) | 486 |
| MnlI | CCTC | 4 cut(s) | 67, 155, 316, 459 |
| Mph1103I | ATGCAT | 1 cut(s) | 390 |
| MseI | TTAA | 1 cut(s) | 560 |
| MslI | CAYNNNNRTG | 2 cut(s) | 280, 378 |
| MspR9I | CCNGG | 2 cut(s) | 55, 361 |
| MvaI | CCWGG | 2 cut(s) | 55, 361 |
| NdeII | GATC | 1 cut(s) | 163 |
| NlaIII | CATG | 3 cut(s) | 189, 352, 392 |
| NsiI | ATGCAT | 1 cut(s) | 390 |
| NspI | RCATGY | 2 cut(s) | 352, 392 |
| OliI | CACNNNNGTG | 1 cut(s) | 378 |
| PceI | AGGCCT | 1 cut(s) | 42 |
| PfeI | GAWTC | 1 cut(s) | 225 |
| PfoI | TCCNGGA | 1 cut(s) | 359 |
| PkrI | GCNGC | 4 cut(s) | 140, 305, 415, 487 |
| Psp6I | CCWGG | 2 cut(s) | 53, 359 |
| PspGI | CCWGG | 2 cut(s) | 53, 359 |
| PspPI | GGNCC | 1 cut(s) | 57 |
| RsaI | GTAC | 2 cut(s) | 7, 68 |
| RsaNI | GTAC | 2 cut(s) | 6, 67 |
| RseI | CAYNNNNRTG | 2 cut(s) | 280, 378 |
| SaqAI | TTAA | 1 cut(s) | 560 |
| SatI | GCNGC | 4 cut(s) | 139, 304, 414, 486 |
| Sau3AI | GATC | 1 cut(s) | 163 |
| Sau96I | GGNCC | 1 cut(s) | 57 |
| ScrFI | CCNGG | 2 cut(s) | 55, 361 |
| SduI | GDGCHC | 3 cut(s) | 287, 340, 375 |
| SexAI | ACCWGGT | 1 cut(s) | 53 |
| SinI | GGWCC | 1 cut(s) | 57 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 280, 378 |
| SpeI | ACTAGT | 1 cut(s) | 265 |
| Sse9I | AATT | 4 cut(s) | 115, 311, 403, 549 |
| SseBI | AGGCCT | 1 cut(s) | 42 |
| SsiI | CCGC | 1 cut(s) | 308 |
| SspMI | CTAG | 3 cut(s) | 23, 266, 546 |
| StuI | AGGCCT | 1 cut(s) | 42 |
| StyD4I | CCNGG | 2 cut(s) | 53, 359 |
| TaaI | ACNGT | 3 cut(s) | 89, 170, 213 |
| TaiI | ACGT | 1 cut(s) | 378 |
| TasI | AATT | 4 cut(s) | 115, 311, 403, 549 |
| TatI | WGTACW | 1 cut(s) | 66 |
| TfiI | GAWTC | 1 cut(s) | 225 |
| Tru1I | TTAA | 1 cut(s) | 560 |
| Tru9I | TTAA | 1 cut(s) | 560 |
| TscAI | CASTG | 3 cut(s) | 76, 173, 345 |
| TseI | GCWGC | 4 cut(s) | 138, 303, 413, 485 |
| TspRI | CASTG | 3 cut(s) | 76, 173, 345 |
| VpaK11BI | GGWCC | 1 cut(s) | 57 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 36 |
| XapI | RAATTY | 2 cut(s) | 115, 549 |
| XbaI | TCTAGA | 1 cut(s) | 545 |
| XceI | RCATGY | 2 cut(s) | 352, 392 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 415 |
| XspI | CTAG | 3 cut(s) | 23, 266, 546 |
| Zsp2I | ATGCAT | 1 cut(s) | 390 |