Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 194 - 350 | 1.4e-18 | Reverse transcriptase (RNA-dependent DNA polymerase) |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 962 |
| AccB1I | GGYRCC | 1 cut(s) | 962 |
| AccBSI | CCGCTC | 1 cut(s) | 364 |
| AciI | CCGC | 2 cut(s) | 364, 894 |
| AclWI | GGATC | 4 cut(s) | 269, 282, 533, 794 |
| AcoI | YGGCCR | 1 cut(s) | 515 |
| AcsI | RAATTY | 4 cut(s) | 33, 448, 611, 1015 |
| AcuI | CTGAAG | 2 cut(s) | 447, 852 |
| AfaI | GTAC | 4 cut(s) | 403, 496, 589, 964 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 67, 661 |
| AgsI | TTSAA | 2 cut(s) | 869, 1015 |
| AjnI | CCWGG | 2 cut(s) | 277, 472 |
| AluBI | AGCT | 7 cut(s) | 40, 223, 468, 674, 728, 862, 880 |
| AluI | AGCT | 7 cut(s) | 40, 223, 468, 674, 728, 862, 880 |
| Alw26I | GTCTC | 1 cut(s) | 784 |
| AlwI | GGATC | 4 cut(s) | 269, 282, 533, 794 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 479 |
| AoxI | GGCC | 3 cut(s) | 58, 476, 515 |
| ApeKI | GCWGC | 1 cut(s) | 220 |
| ApoI | RAATTY | 4 cut(s) | 33, 448, 611, 1015 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 837 |
| Asp718I | GGTACC | 1 cut(s) | 962 |
| AspS9I | GGNCC | 4 cut(s) | 178, 457, 476, 528 |
| AsuHPI | GGTGA | 3 cut(s) | 293, 462, 809 |
| AvaII | GGWCC | 3 cut(s) | 178, 457, 528 |
| BalI | TGGCCA | 1 cut(s) | 517 |
| BamHI | GGATCC | 1 cut(s) | 274 |
| BanI | GGYRCC | 1 cut(s) | 962 |
| BbvI | GCAGC | 1 cut(s) | 232 |
| BccI | CCATC | 2 cut(s) | 476, 866 |
| BciT130I | CCWGG | 2 cut(s) | 279, 474 |
| BcoDI | GTCTC | 1 cut(s) | 784 |
| BfaI | CTAG | 1 cut(s) | 41 |
| BglII | AGATCT | 1 cut(s) | 432 |
| BisI | GCNGC | 1 cut(s) | 221 |
| BlsI | GCNGC | 1 cut(s) | 222 |
| BmcAI | AGTACT | 1 cut(s) | 403 |
| Bme1390I | CCNGG | 2 cut(s) | 279, 474 |
| Bme18I | GGWCC | 3 cut(s) | 178, 457, 528 |
| BmgT120I | GGNCC | 4 cut(s) | 178, 457, 476, 528 |
| BmiI | GGNNCC | 5 cut(s) | 179, 276, 653, 754, 964 |
| BmrFI | CCNGG | 2 cut(s) | 279, 474 |
| BmrI | ACTGGG | 1 cut(s) | 655 |
| BmsI | GCATC | 1 cut(s) | 112 |
| BmuI | ACTGGG | 1 cut(s) | 655 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 83, 115 |
| BpmI | CTGGAG | 1 cut(s) | 1070 |
| BpuEI | CTTGAG | 1 cut(s) | 111 |
| BsaJI | CCNNGG | 4 cut(s) | 453, 473, 555, 781 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 67, 661 |
| Bse1I | ACTGG | 1 cut(s) | 650 |
| Bse3DI | GCAATG | 2 cut(s) | 210, 338 |
| BseBI | CCWGG | 2 cut(s) | 279, 474 |
| BseDI | CCNNGG | 4 cut(s) | 453, 473, 555, 781 |
| BseGI | GGATG | 1 cut(s) | 397 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 67, 661 |
| BseMI | GCAATG | 2 cut(s) | 210, 338 |
| BseMII | CTCAG | 1 cut(s) | 27 |
| BseNI | ACTGG | 1 cut(s) | 650 |
| BseXI | GCAGC | 1 cut(s) | 232 |
| BshFI | GGCC | 3 cut(s) | 60, 478, 517 |
| BshNI | GGYRCC | 1 cut(s) | 962 |
| BslFI | GGGAC | 2 cut(s) | 191, 1035 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 67, 661 |
| BsmAI | GTCTC | 1 cut(s) | 784 |
| BsmFI | GGGAC | 2 cut(s) | 191, 1035 |
| BsmI | GAATGC | 1 cut(s) | 566 |
| BsnI | GGCC | 3 cut(s) | 60, 478, 517 |
| Bsp1407I | TGTACA | 1 cut(s) | 587 |
| Bsp143I | GATC | 5 cut(s) | 274, 432, 538, 577, 799 |
| Bsp19I | CCATGG | 1 cut(s) | 453 |
| BspACI | CCGC | 2 cut(s) | 364, 894 |
| BspANI | GGCC | 3 cut(s) | 60, 478, 517 |
| BspCNI | CTCAG | 1 cut(s) | 26 |
| BspLI | GGNNCC | 5 cut(s) | 179, 276, 653, 754, 964 |
| BspPI | GGATC | 4 cut(s) | 269, 282, 533, 794 |
| BspQI | GCTCTTC | 1 cut(s) | 420 |
| BspT107I | GGYRCC | 1 cut(s) | 962 |
| BsrBI | CCGCTC | 1 cut(s) | 364 |
| BsrDI | GCAATG | 2 cut(s) | 210, 338 |
| BsrGI | TGTACA | 1 cut(s) | 587 |
| BsrI | ACTGG | 1 cut(s) | 650 |
| BssECI | CCNNGG | 4 cut(s) | 453, 473, 555, 781 |
| BssMI | GATC | 5 cut(s) | 274, 432, 538, 577, 799 |
| BssT1I | CCWWGG | 1 cut(s) | 453 |
| Bst2UI | CCWGG | 2 cut(s) | 279, 474 |
| Bst4CI | ACNGT | 2 cut(s) | 24, 401 |
| Bst6I | CTCTTC | 4 cut(s) | 84, 420, 423, 828 |
| BstAUI | TGTACA | 1 cut(s) | 587 |
| BstC8I | GCNNGC | 1 cut(s) | 515 |
| BstDEI | CTNAG | 2 cut(s) | 13, 842 |
| BstDSI | CCRYGG | 2 cut(s) | 453, 781 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 65 |
| BstF5I | GGATG | 1 cut(s) | 397 |
| BstKTI | GATC | 5 cut(s) | 277, 435, 541, 580, 802 |
| BstMAI | GTCTC | 1 cut(s) | 784 |
| BstMBI | GATC | 5 cut(s) | 274, 432, 538, 577, 799 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 122, 976 |
| BstNI | CCWGG | 2 cut(s) | 279, 474 |
| BstSCI | CCNGG | 2 cut(s) | 277, 472 |
| BstV1I | GCAGC | 1 cut(s) | 232 |
| BstX2I | RGATCY | 2 cut(s) | 274, 432 |
| BstYI | RGATCY | 2 cut(s) | 274, 432 |
| BsuRI | GGCC | 3 cut(s) | 60, 478, 517 |
| BtgI | CCRYGG | 2 cut(s) | 453, 781 |
| BtsCI | GGATG | 1 cut(s) | 397 |
| Cac8I | GCNNGC | 1 cut(s) | 515 |
| CaiI | CAGNNNCTG | 1 cut(s) | 479 |
| Cfr13I | GGNCC | 4 cut(s) | 178, 457, 476, 528 |
| Csp6I | GTAC | 4 cut(s) | 402, 495, 588, 963 |
| CviAII | CATG | 6 cut(s) | 200, 244, 296, 454, 923, 997 |
| CviQI | GTAC | 4 cut(s) | 402, 495, 588, 963 |
| DdeI | CTNAG | 2 cut(s) | 13, 842 |
| DpnI | GATC | 5 cut(s) | 276, 434, 540, 579, 801 |
| DpnII | GATC | 5 cut(s) | 274, 432, 538, 577, 799 |
| EaeI | YGGCCR | 1 cut(s) | 515 |
| Eam1104I | CTCTTC | 4 cut(s) | 84, 420, 423, 828 |
| EarI | CTCTTC | 4 cut(s) | 84, 420, 423, 828 |
| Eco130I | CCWWGG | 1 cut(s) | 453 |
| Eco47I | GGWCC | 3 cut(s) | 178, 457, 528 |
| Eco57I | CTGAAG | 2 cut(s) | 447, 852 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 65 |
| EcoO109I | RGGNCCY | 1 cut(s) | 476 |
| EcoRI | GAATTC | 2 cut(s) | 448, 1015 |
| EcoRII | CCWGG | 2 cut(s) | 277, 472 |
| EcoT14I | CCWWGG | 1 cut(s) | 453 |
| EcoT22I | ATGCAT | 2 cut(s) | 566, 981 |
| ErhI | CCWWGG | 1 cut(s) | 453 |
| FaeI | CATG | 6 cut(s) | 203, 247, 299, 457, 926, 1000 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 825, 857, 869, 901 |
| FaqI | GGGAC | 2 cut(s) | 191, 1035 |
| FatI | CATG | 6 cut(s) | 199, 243, 295, 453, 922, 996 |
| FauI | CCCGC | 1 cut(s) | 357 |
| Fnu4HI | GCNGC | 1 cut(s) | 221 |
| FokI | GGATG | 1 cut(s) | 404 |
| Fsp4HI | GCNGC | 1 cut(s) | 221 |
| FspBI | CTAG | 1 cut(s) | 41 |
| GluI | GCNGC | 1 cut(s) | 221 |
| GsuI | CTGGAG | 1 cut(s) | 1070 |
| HaeIII | GGCC | 3 cut(s) | 60, 478, 517 |
| Hin1II | CATG | 6 cut(s) | 203, 247, 299, 457, 926, 1000 |
| HindIII | AAGCTT | 1 cut(s) | 878 |
| HinfI | GANTC | 4 cut(s) | 11, 156, 316, 722 |
| HphI | GGTGA | 3 cut(s) | 293, 462, 809 |
| Hpy166II | GTNNAC | 1 cut(s) | 109 |
| Hpy188I | TCNGA | 5 cut(s) | 67, 427, 441, 552, 559 |
| Hpy188III | TCNNGA | 8 cut(s) | 83, 128, 153, 575, 581, 641, 1020, 1049 |
| Hpy8I | GTNNAC | 1 cut(s) | 109 |
| HpyAV | CCTTC | 2 cut(s) | 581, 927 |
| HpyCH4III | ACNGT | 2 cut(s) | 24, 401 |
| HpyCH4V | TGCA | 6 cut(s) | 50, 203, 343, 564, 935, 979 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 122, 976 |
| HpyF3I | CTNAG | 2 cut(s) | 13, 842 |
| Hsp92II | CATG | 6 cut(s) | 203, 247, 299, 457, 926, 1000 |
| KpnI | GGTACC | 1 cut(s) | 966 |
| Kzo9I | GATC | 5 cut(s) | 274, 432, 538, 577, 799 |
| LguI | GCTCTTC | 1 cut(s) | 420 |
| LmnI | GCTCC | 1 cut(s) | 782 |
| Lsp1109I | GCAGC | 1 cut(s) | 232 |
| LweI | GCATC | 1 cut(s) | 112 |
| MaeI | CTAG | 1 cut(s) | 41 |
| MaeIII | GTNAC | 1 cut(s) | 382 |
| MalI | GATC | 5 cut(s) | 276, 434, 540, 579, 801 |
| MbiI | CCGCTC | 1 cut(s) | 364 |
| MboI | GATC | 5 cut(s) | 274, 432, 538, 577, 799 |
| MboII | GAAGA | 7 cut(s) | 98, 101, 311, 407, 440, 845, 881 |
| MfeI | CAATTG | 1 cut(s) | 519 |
| MflI | RGATCY | 2 cut(s) | 274, 432 |
| MlsI | TGGCCA | 1 cut(s) | 517 |
| MluNI | TGGCCA | 1 cut(s) | 517 |
| MlyI | GAGTC | 2 cut(s) | 5, 731 |
| Mox20I | TGGCCA | 1 cut(s) | 517 |
| Mph1103I | ATGCAT | 2 cut(s) | 566, 981 |
| MroXI | GAANNNNTTC | 1 cut(s) | 837 |
| MscI | TGGCCA | 1 cut(s) | 517 |
| MseI | TTAA | 5 cut(s) | 225, 312, 504, 609, 708 |
| Msp20I | TGGCCA | 1 cut(s) | 517 |
| MspR9I | CCNGG | 2 cut(s) | 279, 474 |
| MunI | CAATTG | 1 cut(s) | 519 |
| Mva1269I | GAATGC | 1 cut(s) | 566 |
| MvaI | CCWGG | 2 cut(s) | 279, 474 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 122, 976 |
| NcoI | CCATGG | 1 cut(s) | 453 |
| NdeII | GATC | 5 cut(s) | 274, 432, 538, 577, 799 |
| NlaIII | CATG | 6 cut(s) | 203, 247, 299, 457, 926, 1000 |
| NlaIV | GGNNCC | 5 cut(s) | 179, 276, 653, 754, 964 |
| NmeAIII | GCCGAG | 1 cut(s) | 305 |
| NsiI | ATGCAT | 2 cut(s) | 566, 981 |
| PciSI | GCTCTTC | 1 cut(s) | 420 |
| PctI | GAATGC | 1 cut(s) | 566 |
| PdmI | GAANNNNTTC | 1 cut(s) | 837 |
| PfeI | GAWTC | 2 cut(s) | 156, 316 |
| PflFI | GACNNNGTC | 1 cut(s) | 14 |
| PkrI | GCNGC | 1 cut(s) | 222 |
| PleI | GAGTC | 2 cut(s) | 5, 730 |
| PpsI | GAGTC | 2 cut(s) | 5, 730 |
| Psp6I | CCWGG | 2 cut(s) | 277, 472 |
| PspGI | CCWGG | 2 cut(s) | 277, 472 |
| PspN4I | GGNNCC | 5 cut(s) | 179, 276, 653, 754, 964 |
| PspPI | GGNCC | 4 cut(s) | 178, 457, 476, 528 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 955, 987 |
| PstNI | CAGNNNCTG | 1 cut(s) | 479 |
| PsuI | RGATCY | 2 cut(s) | 274, 432 |
| PsyI | GACNNNGTC | 1 cut(s) | 14 |
| RsaI | GTAC | 4 cut(s) | 403, 496, 589, 964 |
| RsaNI | GTAC | 4 cut(s) | 402, 495, 588, 963 |
| SapI | GCTCTTC | 1 cut(s) | 420 |
| SaqAI | TTAA | 5 cut(s) | 225, 312, 504, 609, 708 |
| SatI | GCNGC | 1 cut(s) | 221 |
| Sau3AI | GATC | 5 cut(s) | 274, 432, 538, 577, 799 |
| Sau96I | GGNCC | 4 cut(s) | 178, 457, 476, 528 |
| ScaI | AGTACT | 1 cut(s) | 403 |
| SchI | GAGTC | 2 cut(s) | 5, 731 |
| ScrFI | CCNGG | 2 cut(s) | 279, 474 |
| SfaNI | GCATC | 1 cut(s) | 112 |
| SinI | GGWCC | 3 cut(s) | 178, 457, 528 |
| SmlI | CTYRAG | 1 cut(s) | 126 |
| SmoI | CTYRAG | 1 cut(s) | 126 |
| SsiI | CCGC | 2 cut(s) | 364, 894 |
| SspI | AATATT | 2 cut(s) | 137, 601 |
| SspMI | CTAG | 1 cut(s) | 41 |
| StyD4I | CCNGG | 2 cut(s) | 277, 472 |
| StyI | CCWWGG | 1 cut(s) | 453 |
| TaaI | ACNGT | 2 cut(s) | 24, 401 |
| TatI | WGTACW | 2 cut(s) | 401, 587 |
| TfiI | GAWTC | 2 cut(s) | 156, 316 |
| Tru1I | TTAA | 5 cut(s) | 225, 312, 504, 609, 708 |
| Tru9I | TTAA | 5 cut(s) | 225, 312, 504, 609, 708 |
| TseI | GCWGC | 1 cut(s) | 220 |
| TspDTI | ATGAA | 4 cut(s) | 180, 188, 461, 985 |
| TspGWI | ACGGA | 1 cut(s) | 792 |
| Tth111I | GACNNNGTC | 1 cut(s) | 14 |
| VpaK11BI | GGWCC | 3 cut(s) | 178, 457, 528 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 65 |
| XapI | RAATTY | 4 cut(s) | 33, 448, 611, 1015 |
| XmnI | GAANNNNTTC | 1 cut(s) | 837 |
| XspI | CTAG | 1 cut(s) | 41 |
| ZrmI | AGTACT | 1 cut(s) | 403 |
| Zsp2I | ATGCAT | 2 cut(s) | 566, 981 |