ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1451 |
| AccB1I | GGYRCC | 2 cut(s) | 1549, 2258 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2205 |
| AccI | GTMKAC | 1 cut(s) | 2238 |
| AccII | CGCG | 2 cut(s) | 850, 1180 |
| AccIII | TCCGGA | 1 cut(s) | 1578 |
| AciI | CCGC | 4 cut(s) | 149, 239, 848, 1639 |
| AclWI | GGATC | 5 cut(s) | 351, 532, 1224, 1330, 2287 |
| AcoI | YGGCCR | 1 cut(s) | 1141 |
| AcsI | RAATTY | 4 cut(s) | 378, 1166, 1616, 2211 |
| AcuI | CTGAAG | 2 cut(s) | 193, 674 |
| AcyI | GRCGYC | 1 cut(s) | 1550 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 1150, 1313, 1314, 2065, 2104, 2205, 2296 |
| AflIII | ACRYGT | 2 cut(s) | 1178, 1340 |
| AhlI | ACTAGT | 1 cut(s) | 1670 |
| AjnI | CCWGG | 9 cut(s) | 397, 520, 931, 947, 1390, 1468, 1473, 1609, 2271 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2095, 2127 |
| Alw21I | GWGCWC | 1 cut(s) | 223 |
| Alw26I | GTCTC | 1 cut(s) | 930 |
| AlwI | GGATC | 5 cut(s) | 351, 532, 1224, 1330, 2287 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1082, 1113 |
| Ama87I | CYCGRG | 2 cut(s) | 122, 440 |
| Aor13HI | TCCGGA | 1 cut(s) | 1578 |
| AoxI | GGCC | 4 cut(s) | 288, 394, 1141, 1471 |
| ApoI | RAATTY | 4 cut(s) | 378, 1166, 1616, 2211 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1474, 1506 |
| AseI | ATTAAT | 2 cut(s) | 537, 740 |
| AspLEI | GCGC | 5 cut(s) | 520, 612, 1452, 1552, 2151 |
| AspS9I | GGNCC | 8 cut(s) | 143, 395, 677, 951, 1148, 1388, 1796, 1877 |
| AsuC2I | CCSGG | 2 cut(s) | 1152, 2232 |
| AsuHPI | GGTGA | 5 cut(s) | 130, 881, 1052, 1202, 1535 |
| AvaI | CYCGRG | 2 cut(s) | 122, 440 |
| AvaII | GGWCC | 7 cut(s) | 143, 677, 951, 1148, 1388, 1796, 1877 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2100, 2133 |
| BanI | GGYRCC | 2 cut(s) | 1549, 2258 |
| BanII | GRGCYC | 3 cut(s) | 123, 223, 1052 |
| BbsI | GAAGAC | 1 cut(s) | 789 |
| Bbv12I | GWGCWC | 1 cut(s) | 223 |
| BccI | CCATC | 2 cut(s) | 160, 470 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 78, 112 |
| BciT130I | CCWGG | 9 cut(s) | 399, 522, 933, 949, 1392, 1470, 1475, 1611, 2273 |
| BciVI | GTATCC | 1 cut(s) | 2101 |
| BclI | TGATCA | 1 cut(s) | 874 |
| BcnI | CCSGG | 2 cut(s) | 1152, 2232 |
| BcoDI | GTCTC | 1 cut(s) | 930 |
| BcuI | ACTAGT | 1 cut(s) | 1670 |
| BfaI | CTAG | 7 cut(s) | 579, 1005, 1061, 1671, 1706, 2184, 2307 |
| BfmI | CTRYAG | 3 cut(s) | 410, 600, 1842 |
| BfoI | RGCGCY | 1 cut(s) | 1553 |
| BfuI | GTATCC | 1 cut(s) | 2101 |
| BglII | AGATCT | 2 cut(s) | 1572, 1891 |
| BmcAI | AGTACT | 1 cut(s) | 2182 |
| Bme18I | GGWCC | 7 cut(s) | 143, 677, 951, 1148, 1388, 1796, 1877 |
| BmeT110I | CYCGRG | 2 cut(s) | 122, 440 |
| BmgT120I | GGNCC | 8 cut(s) | 143, 395, 677, 951, 1148, 1388, 1796, 1877 |
| BmiI | GGNNCC | 6 cut(s) | 243, 678, 1551, 1643, 2118, 2260 |
| BmrI | ACTGGG | 3 cut(s) | 1092, 1257, 1555 |
| BmuI | ACTGGG | 3 cut(s) | 1092, 1257, 1555 |
| BpiI | GAAGAC | 1 cut(s) | 789 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2200, 2232 |
| BpmI | CTGGAG | 4 cut(s) | 582, 1413, 1632, 1908 |
| BpuEI | CTTGAG | 1 cut(s) | 976 |
| BpuMI | CCSGG | 2 cut(s) | 1152, 2232 |
| Bsa29I | ATCGAT | 1 cut(s) | 2282 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1012, 1101 |
| BsaHI | GRCGYC | 1 cut(s) | 1550 |
| BsaJI | CCNNGG | 6 cut(s) | 397, 398, 1144, 2048, 2098, 2199 |
| BsaWI | WCCGGW | 2 cut(s) | 140, 1578 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 1150, 1313, 1314, 2065, 2104, 2205, 2296 |
| Bse118I | RCCGGY | 1 cut(s) | 145 |
| Bse1I | ACTGG | 8 cut(s) | 72, 680, 791, 1087, 1252, 1525, 1550, 1925 |
| Bse3DI | GCAATG | 2 cut(s) | 1359, 1459 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1012, 1101 |
| BseAI | TCCGGA | 1 cut(s) | 1578 |
| BseBI | CCWGG | 9 cut(s) | 399, 522, 933, 949, 1392, 1470, 1475, 1611, 2273 |
| BseCI | ATCGAT | 1 cut(s) | 2282 |
| BseDI | CCNNGG | 6 cut(s) | 397, 398, 1144, 2048, 2098, 2199 |
| BseGI | GGATG | 6 cut(s) | 562, 914, 1423, 1781, 1942, 1984 |
| BseJI | GATNNNNATC | 2 cut(s) | 1012, 1101 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 1150, 1313, 1314, 2065, 2104, 2205, 2296 |
| BseMI | GCAATG | 2 cut(s) | 1359, 1459 |
| BseMII | CTCAG | 7 cut(s) | 345, 1216, 1317, 1615, 1745, 2191, 2231 |
| BseNI | ACTGG | 8 cut(s) | 72, 680, 791, 1087, 1252, 1525, 1550, 1925 |
| BseRI | GAGGAG | 2 cut(s) | 809, 918 |
| BsgI | GTGCAG | 3 cut(s) | 753, 1057, 1784 |
| Bsh1236I | CGCG | 2 cut(s) | 850, 1180 |
| BshFI | GGCC | 4 cut(s) | 290, 396, 1143, 1473 |
| BshNI | GGYRCC | 2 cut(s) | 1549, 2258 |
| BshVI | ATCGAT | 1 cut(s) | 2282 |
| BsiHKAI | GWGCWC | 1 cut(s) | 223 |
| BsiHKCI | CYCGRG | 2 cut(s) | 122, 440 |
| BsiSI | CCGG | 6 cut(s) | 141, 146, 198, 1151, 1579, 2232 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 1150, 1313, 1314, 2065, 2104, 2205, 2296 |
| BsmAI | GTCTC | 1 cut(s) | 930 |
| BsnI | GGCC | 4 cut(s) | 290, 396, 1143, 1473 |
| BsoBI | CYCGRG | 2 cut(s) | 122, 440 |
| Bsp1286I | GDGCHC | 3 cut(s) | 123, 223, 1052 |
| Bsp13I | TCCGGA | 1 cut(s) | 1578 |
| Bsp19I | CCATGG | 2 cut(s) | 2098, 2199 |
| BspACI | CCGC | 4 cut(s) | 149, 239, 848, 1639 |
| BspANI | GGCC | 4 cut(s) | 290, 396, 1143, 1473 |
| BspCNI | CTCAG | 7 cut(s) | 346, 1215, 1318, 1614, 1744, 2190, 2230 |
| BspDI | ATCGAT | 1 cut(s) | 2282 |
| BspEI | TCCGGA | 1 cut(s) | 1578 |
| BspFNI | CGCG | 2 cut(s) | 850, 1180 |
| BspHI | TCATGA | 2 cut(s) | 880, 2011 |
| BspLI | GGNNCC | 6 cut(s) | 243, 678, 1551, 1643, 2118, 2260 |
| BspMAI | CTGCAG | 1 cut(s) | 604 |
| BspPI | GGATC | 5 cut(s) | 351, 532, 1224, 1330, 2287 |
| BspT107I | GGYRCC | 2 cut(s) | 1549, 2258 |
| BsrDI | GCAATG | 2 cut(s) | 1359, 1459 |
| BsrFI | RCCGGY | 1 cut(s) | 145 |
| BsrI | ACTGG | 8 cut(s) | 72, 680, 791, 1087, 1252, 1525, 1550, 1925 |
| BssAI | RCCGGY | 1 cut(s) | 145 |
| BssECI | CCNNGG | 6 cut(s) | 397, 398, 1144, 2048, 2098, 2199 |
| BssNAI | GTATAC | 1 cut(s) | 2239 |
| BssNI | GRCGYC | 1 cut(s) | 1550 |
| BssT1I | CCWWGG | 2 cut(s) | 2098, 2199 |
| Bst1107I | GTATAC | 1 cut(s) | 2239 |
| Bst2UI | CCWGG | 9 cut(s) | 399, 522, 933, 949, 1392, 1470, 1475, 1611, 2273 |
| Bst4CI | ACNGT | 6 cut(s) | 414, 572, 1037, 1242, 1663, 2026 |
| Bst6I | CTCTTC | 3 cut(s) | 654, 847, 1746 |
| BstACI | GRCGYC | 1 cut(s) | 1550 |
| BstC8I | GCNNGC | 9 cut(s) | 219, 223, 283, 394, 909, 942, 993, 1839, 1916 |
| BstDSI | CCRYGG | 2 cut(s) | 2098, 2199 |
| BstEII | GGTNACC | 1 cut(s) | 1154 |
| BstF5I | GGATG | 6 cut(s) | 562, 914, 1423, 1781, 1942, 1984 |
| BstFNI | CGCG | 2 cut(s) | 850, 1180 |
| BstH2I | RGCGCY | 1 cut(s) | 1553 |
| BstHHI | GCGC | 5 cut(s) | 520, 612, 1452, 1552, 2151 |
| BstMAI | GTCTC | 1 cut(s) | 930 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 287, 1510 |
| BstNI | CCWGG | 9 cut(s) | 399, 522, 933, 949, 1392, 1470, 1475, 1611, 2273 |
| BstNSI | RCATGY | 1 cut(s) | 1344 |
| BstPI | GGTNACC | 1 cut(s) | 1154 |
| BstSFI | CTRYAG | 3 cut(s) | 410, 600, 1842 |
| BstUI | CGCG | 2 cut(s) | 850, 1180 |
| BstV2I | GAAGAC | 1 cut(s) | 789 |
| BstX2I | RGATCY | 5 cut(s) | 343, 1216, 1322, 1572, 1891 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1545 |
| BstYI | RGATCY | 5 cut(s) | 343, 1216, 1322, 1572, 1891 |
| BstZ17I | GTATAC | 1 cut(s) | 2239 |
| Bsu15I | ATCGAT | 1 cut(s) | 2282 |
| BsuI | GTATCC | 1 cut(s) | 2101 |
| BsuRI | GGCC | 4 cut(s) | 290, 396, 1143, 1473 |
| BsuTUI | ATCGAT | 1 cut(s) | 2282 |
| BtgI | CCRYGG | 2 cut(s) | 2098, 2199 |
| BtsCI | GGATG | 6 cut(s) | 562, 914, 1423, 1781, 1942, 1984 |
| BtsI | GCAGTG | 1 cut(s) | 1218 |
| BtsIMutI | CAGTG | 4 cut(s) | 351, 687, 1218, 1609 |
| Cac8I | GCNNGC | 9 cut(s) | 219, 223, 283, 394, 909, 942, 993, 1839, 1916 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1082, 1113 |
| CciI | TCATGA | 2 cut(s) | 880, 2011 |
| CfoI | GCGC | 5 cut(s) | 520, 612, 1452, 1552, 2151 |
| Cfr10I | RCCGGY | 1 cut(s) | 145 |
| Cfr13I | GGNCC | 8 cut(s) | 143, 395, 677, 951, 1148, 1388, 1796, 1877 |
| ClaI | ATCGAT | 1 cut(s) | 2282 |
| CpoI | CGGWCCG | 1 cut(s) | 143 |
| CseI | GACGC | 1 cut(s) | 440 |
| CsiI | ACCWGGT | 1 cut(s) | 947 |
| CspI | CGGWCCG | 1 cut(s) | 143 |
| DinI | GGCGCC | 1 cut(s) | 1551 |
| EaeI | YGGCCR | 1 cut(s) | 1141 |
| Eam1104I | CTCTTC | 3 cut(s) | 654, 847, 1746 |
| EarI | CTCTTC | 3 cut(s) | 654, 847, 1746 |
| EciI | GGCGGA | 1 cut(s) | 254 |
| Ecl136II | GAGCTC | 1 cut(s) | 221 |
| Eco130I | CCWWGG | 2 cut(s) | 2098, 2199 |
| Eco24I | GRGCYC | 3 cut(s) | 123, 223, 1052 |
| Eco47I | GGWCC | 7 cut(s) | 143, 677, 951, 1148, 1388, 1796, 1877 |
| Eco53kI | GAGCTC | 1 cut(s) | 221 |
| Eco57I | CTGAAG | 2 cut(s) | 193, 674 |
| Eco88I | CYCGRG | 2 cut(s) | 122, 440 |
| Eco91I | GGTNACC | 1 cut(s) | 1154 |
| EcoICRI | GAGCTC | 1 cut(s) | 221 |
| EcoO109I | RGGNCCY | 1 cut(s) | 951 |
| EcoO65I | GGTNACC | 1 cut(s) | 1154 |
| EcoRI | GAATTC | 2 cut(s) | 378, 2211 |
| EcoRII | CCWGG | 9 cut(s) | 397, 520, 931, 947, 1390, 1468, 1473, 1609, 2271 |
| EcoT14I | CCWWGG | 2 cut(s) | 2098, 2199 |
| EcoT38I | GRGCYC | 3 cut(s) | 123, 223, 1052 |
| EgeI | GGCGCC | 1 cut(s) | 1551 |
| EheI | GGCGCC | 1 cut(s) | 1551 |
| ErhI | CCWWGG | 2 cut(s) | 2098, 2199 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1287, 1319, 1493, 1525 |
| FauNDI | CATATG | 1 cut(s) | 1540 |
| FbaI | TGATCA | 1 cut(s) | 874 |
| FblI | GTMKAC | 1 cut(s) | 2238 |
| FokI | GGATG | 6 cut(s) | 569, 901, 1430, 1768, 1949, 1991 |
| FriOI | GRGCYC | 3 cut(s) | 123, 223, 1052 |
| FspBI | CTAG | 7 cut(s) | 579, 1005, 1061, 1671, 1706, 2184, 2307 |
| FspI | TGCGCA | 1 cut(s) | 1451 |
| GlaI | GCGC | 5 cut(s) | 519, 611, 1451, 1551, 2150 |
| GsuI | CTGGAG | 4 cut(s) | 582, 1413, 1632, 1908 |
| HaeII | RGCGCY | 1 cut(s) | 1553 |
| HaeIII | GGCC | 4 cut(s) | 290, 396, 1143, 1473 |
| HapII | CCGG | 6 cut(s) | 141, 146, 198, 1151, 1579, 2232 |
| HgaI | GACGC | 1 cut(s) | 440 |
| HhaI | GCGC | 5 cut(s) | 520, 612, 1452, 1552, 2151 |
| Hin1I | GRCGYC | 1 cut(s) | 1550 |
| Hin6I | GCGC | 5 cut(s) | 518, 610, 1450, 1550, 2149 |
| HinP1I | GCGC | 5 cut(s) | 518, 610, 1450, 1550, 2149 |
| HincII | GTYRAC | 1 cut(s) | 1245 |
| HindII | GTYRAC | 1 cut(s) | 1245 |
| HindIII | AAGCTT | 2 cut(s) | 1835, 1912 |
| HinfI | GANTC | 8 cut(s) | 22, 101, 271, 646, 724, 1495, 2092, 2284 |
| HpaII | CCGG | 6 cut(s) | 141, 146, 198, 1151, 1579, 2232 |
| HphI | GGTGA | 5 cut(s) | 130, 881, 1052, 1202, 1535 |
| Hpy166II | GTNNAC | 9 cut(s) | 78, 205, 568, 983, 1245, 1607, 1880, 2223, 2239 |
| Hpy8I | GTNNAC | 9 cut(s) | 78, 205, 568, 983, 1245, 1607, 1880, 2223, 2239 |
| HpyAV | CCTTC | 8 cut(s) | 241, 322, 1246, 1306, 1563, 2041, 2063, 2178 |
| HpyCH4III | ACNGT | 6 cut(s) | 414, 572, 1037, 1242, 1663, 2026 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 287, 1510 |
| Hsp92I | GRCGYC | 1 cut(s) | 1550 |
| HspAI | GCGC | 5 cut(s) | 518, 610, 1450, 1550, 2149 |
| KasI | GGCGCC | 1 cut(s) | 1549 |
| Kpn2I | TCCGGA | 1 cut(s) | 1578 |
| Ksp22I | TGATCA | 1 cut(s) | 874 |
| LmnI | GCTCC | 7 cut(s) | 126, 184, 241, 904, 1064, 1394, 1647 |
| MabI | ACCWGGT | 1 cut(s) | 947 |
| MaeI | CTAG | 7 cut(s) | 579, 1005, 1061, 1671, 1706, 2184, 2307 |
| MaeIII | GTNAC | 6 cut(s) | 430, 1154, 1297, 1856, 2020, 2026 |
| MboII | GAAGA | 6 cut(s) | 370, 641, 794, 864, 1567, 1763 |
| MfeI | CAATTG | 1 cut(s) | 694 |
| MflI | RGATCY | 5 cut(s) | 343, 1216, 1322, 1572, 1891 |
| MhlI | GDGCHC | 3 cut(s) | 123, 223, 1052 |
| MluI | ACGCGT | 1 cut(s) | 1178 |
| Mly113I | GGCGCC | 1 cut(s) | 1550 |
| MlyI | GAGTC | 3 cut(s) | 640, 733, 1504 |
| MmeI | TCCRAC | 3 cut(s) | 129, 707, 2257 |
| MroI | TCCGGA | 1 cut(s) | 1578 |
| MseI | TTAA | 4 cut(s) | 537, 740, 2001, 2154 |
| MslI | CAYNNNNRTG | 2 cut(s) | 387, 2256 |
| MspI | CCGG | 6 cut(s) | 141, 146, 198, 1151, 1579, 2232 |
| MunI | CAATTG | 1 cut(s) | 694 |
| MvaI | CCWGG | 9 cut(s) | 399, 522, 933, 949, 1392, 1470, 1475, 1611, 2273 |
| MvnI | CGCG | 2 cut(s) | 850, 1180 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 287, 1510 |
| NarI | GGCGCC | 1 cut(s) | 1550 |
| NciI | CCSGG | 2 cut(s) | 1152, 2232 |
| NcoI | CCATGG | 2 cut(s) | 2098, 2199 |
| NdeI | CATATG | 1 cut(s) | 1540 |
| NlaIV | GGNNCC | 6 cut(s) | 243, 678, 1551, 1643, 2118, 2260 |
| NmeAIII | GCCGAG | 1 cut(s) | 1169 |
| NsbI | TGCGCA | 1 cut(s) | 1451 |
| NspI | RCATGY | 1 cut(s) | 1344 |
| PagI | TCATGA | 2 cut(s) | 880, 2011 |
| PasI | CCCWGGG | 1 cut(s) | 398 |
| PciI | ACATGT | 1 cut(s) | 1340 |
| PfeI | GAWTC | 5 cut(s) | 22, 101, 271, 2092, 2284 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2205 |
| PleI | GAGTC | 3 cut(s) | 640, 732, 1503 |
| PluTI | GGCGCC | 1 cut(s) | 1553 |
| PpsI | GAGTC | 3 cut(s) | 640, 732, 1503 |
| PpuMI | RGGWCCY | 1 cut(s) | 951 |
| PscI | ACATGT | 1 cut(s) | 1340 |
| PshBI | ATTAAT | 2 cut(s) | 537, 740 |
| Psp124BI | GAGCTC | 1 cut(s) | 223 |
| Psp5II | RGGWCCY | 1 cut(s) | 951 |
| Psp6I | CCWGG | 9 cut(s) | 397, 520, 931, 947, 1390, 1468, 1473, 1609, 2271 |
| PspEI | GGTNACC | 1 cut(s) | 1154 |
| PspGI | CCWGG | 9 cut(s) | 397, 520, 931, 947, 1390, 1468, 1473, 1609, 2271 |
| PspN4I | GGNNCC | 6 cut(s) | 243, 678, 1551, 1643, 2118, 2260 |
| PspPI | GGNCC | 8 cut(s) | 143, 395, 677, 951, 1148, 1388, 1796, 1877 |
| PspPPI | RGGWCCY | 1 cut(s) | 951 |
| PstI | CTGCAG | 1 cut(s) | 604 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1082, 1113 |
| PsuI | RGATCY | 5 cut(s) | 343, 1216, 1322, 1572, 1891 |
| RseI | CAYNNNNRTG | 2 cut(s) | 387, 2256 |
| Rsr2I | CGGWCCG | 1 cut(s) | 143 |
| RsrII | CGGWCCG | 1 cut(s) | 143 |
| SacI | GAGCTC | 1 cut(s) | 223 |
| SaqAI | TTAA | 4 cut(s) | 537, 740, 2001, 2154 |
| Sau96I | GGNCC | 8 cut(s) | 143, 395, 677, 951, 1148, 1388, 1796, 1877 |
| ScaI | AGTACT | 1 cut(s) | 2182 |
| SchI | GAGTC | 3 cut(s) | 640, 733, 1504 |
| SduI | GDGCHC | 3 cut(s) | 123, 223, 1052 |
| SexAI | ACCWGGT | 1 cut(s) | 947 |
| SfcI | CTRYAG | 3 cut(s) | 410, 600, 1842 |
| SfoI | GGCGCC | 1 cut(s) | 1551 |
| SinI | GGWCC | 7 cut(s) | 143, 677, 951, 1148, 1388, 1796, 1877 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 387, 2256 |
| SmlI | CTYRAG | 1 cut(s) | 955 |
| SmoI | CTYRAG | 1 cut(s) | 955 |
| SpeI | ACTAGT | 1 cut(s) | 1670 |
| SsiI | CCGC | 4 cut(s) | 149, 239, 848, 1639 |
| SspDI | GGCGCC | 1 cut(s) | 1549 |
| SspI | AATATT | 1 cut(s) | 1693 |
| SspMI | CTAG | 7 cut(s) | 579, 1005, 1061, 1671, 1706, 2184, 2307 |
| SstI | GAGCTC | 1 cut(s) | 223 |
| StyI | CCWWGG | 2 cut(s) | 2098, 2199 |
| TaaI | ACNGT | 6 cut(s) | 414, 572, 1037, 1242, 1663, 2026 |
| TaqI | TCGA | 5 cut(s) | 318, 663, 1031, 1278, 2282 |
| TatI | WGTACW | 5 cut(s) | 77, 982, 1456, 1702, 2180 |
| TauI | GCSGC | 2 cut(s) | 152, 1642 |
| TfiI | GAWTC | 5 cut(s) | 22, 101, 271, 2092, 2284 |
| Tru1I | TTAA | 4 cut(s) | 537, 740, 2001, 2154 |
| Tru9I | TTAA | 4 cut(s) | 537, 740, 2001, 2154 |
| TscAI | CASTG | 4 cut(s) | 358, 687, 1218, 1609 |
| TspDTI | ATGAA | 6 cut(s) | 220, 522, 1179, 1544, 1685, 2292 |
| TspGWI | ACGGA | 4 cut(s) | 197, 1401, 1634, 2081 |
| TspRI | CASTG | 4 cut(s) | 358, 687, 1218, 1609 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2205 |
| VpaK11BI | GGWCC | 7 cut(s) | 143, 677, 951, 1148, 1388, 1796, 1877 |
| VspI | ATTAAT | 2 cut(s) | 537, 740 |
| XapI | RAATTY | 4 cut(s) | 378, 1166, 1616, 2211 |
| XceI | RCATGY | 1 cut(s) | 1344 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 395 |
| XmiI | GTMKAC | 1 cut(s) | 2238 |
| XspI | CTAG | 7 cut(s) | 579, 1005, 1061, 1671, 1706, 2184, 2307 |
| ZrmI | AGTACT | 1 cut(s) | 2182 |