Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Hpt | PF01627 | 47 - 126 | 9.6e-08 | Hpt domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 278 |
| AciI | CCGC | 1 cut(s) | 318 |
| AcuI | CTGAAG | 1 cut(s) | 159 |
| AfeI | AGCGCT | 1 cut(s) | 195 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 166 |
| AgsI | TTSAA | 2 cut(s) | 110, 247 |
| AjnI | CCWGG | 1 cut(s) | 414 |
| AleI | CACNNNNGTG | 1 cut(s) | 336 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 197, 229 |
| AluBI | AGCT | 6 cut(s) | 106, 120, 175, 267, 356, 364 |
| AluI | AGCT | 6 cut(s) | 106, 120, 175, 267, 356, 364 |
| Alw21I | GWGCWC | 1 cut(s) | 122 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| Aor51HI | AGCGCT | 1 cut(s) | 195 |
| ApeKI | GCWGC | 4 cut(s) | 100, 103, 264, 364 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 251 |
| AspLEI | GCGC | 1 cut(s) | 196 |
| BanI | GGYRCC | 1 cut(s) | 278 |
| BanII | GRGCYC | 1 cut(s) | 122 |
| BauI | CACGAG | 1 cut(s) | 404 |
| Bbv12I | GWGCWC | 1 cut(s) | 122 |
| BbvI | GCAGC | 4 cut(s) | 112, 115, 276, 351 |
| BccI | CCATC | 1 cut(s) | 196 |
| BciT130I | CCWGG | 1 cut(s) | 416 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfmI | CTRYAG | 1 cut(s) | 98 |
| BfoI | RGCGCY | 1 cut(s) | 197 |
| BisI | GCNGC | 5 cut(s) | 101, 104, 265, 318, 365 |
| BlsI | GCNGC | 5 cut(s) | 102, 105, 266, 319, 366 |
| Bme1390I | CCNGG | 1 cut(s) | 416 |
| BmiI | GGNNCC | 1 cut(s) | 280 |
| BmrFI | CCNGG | 1 cut(s) | 416 |
| BpuEI | CTTGAG | 4 cut(s) | 199, 253, 370, 374 |
| BsaBI | GATNNNNATC | 1 cut(s) | 39 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 166 |
| Bse3DI | GCAATG | 1 cut(s) | 60 |
| Bse8I | GATNNNNATC | 1 cut(s) | 39 |
| BseBI | CCWGG | 1 cut(s) | 416 |
| BseGI | GGATG | 1 cut(s) | 85 |
| BseJI | GATNNNNATC | 1 cut(s) | 39 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 166 |
| BseMI | GCAATG | 1 cut(s) | 60 |
| BseMII | CTCAG | 2 cut(s) | 202, 304 |
| BseXI | GCAGC | 4 cut(s) | 112, 115, 276, 351 |
| BseYI | CCCAGC | 1 cut(s) | 341 |
| BsgI | GTGCAG | 1 cut(s) | 386 |
| BshNI | GGYRCC | 1 cut(s) | 278 |
| BsiHKAI | GWGCWC | 1 cut(s) | 122 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 166 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| Bsp1286I | GDGCHC | 1 cut(s) | 122 |
| Bsp143I | GATC | 1 cut(s) | 19 |
| BspACI | CCGC | 1 cut(s) | 318 |
| BspCNI | CTCAG | 2 cut(s) | 201, 303 |
| BspLI | GGNNCC | 1 cut(s) | 280 |
| BspMAI | CTGCAG | 1 cut(s) | 102 |
| BspT107I | GGYRCC | 1 cut(s) | 278 |
| BsrDI | GCAATG | 1 cut(s) | 60 |
| BssMI | GATC | 1 cut(s) | 19 |
| BssSI | CACGAG | 1 cut(s) | 404 |
| Bst2BI | CACGAG | 1 cut(s) | 404 |
| Bst2UI | CCWGG | 1 cut(s) | 416 |
| Bst4CI | ACNGT | 1 cut(s) | 338 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 91 |
| BstC8I | GCNNGC | 2 cut(s) | 30, 51 |
| BstDEI | CTNAG | 2 cut(s) | 188, 290 |
| BstF5I | GGATG | 1 cut(s) | 85 |
| BstH2I | RGCGCY | 1 cut(s) | 197 |
| BstHHI | GCGC | 1 cut(s) | 196 |
| BstKTI | GATC | 1 cut(s) | 22 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstMBI | GATC | 1 cut(s) | 19 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 55, 91, 100, 270, 314 |
| BstNI | CCWGG | 1 cut(s) | 416 |
| BstSCI | CCNGG | 1 cut(s) | 414 |
| BstSFI | CTRYAG | 1 cut(s) | 98 |
| BstV1I | GCAGC | 4 cut(s) | 112, 115, 276, 351 |
| BtsCI | GGATG | 1 cut(s) | 85 |
| Cac8I | GCNNGC | 2 cut(s) | 30, 51 |
| CfoI | GCGC | 1 cut(s) | 196 |
| CviAII | CATG | 1 cut(s) | 374 |
| CviJI | RGCY | 8 cut(s) | 32, 106, 120, 175, 267, 317, 356, 364 |
| CviKI_1 | RGCY | 8 cut(s) | 32, 106, 120, 175, 267, 317, 356, 364 |
| DdeI | CTNAG | 2 cut(s) | 188, 290 |
| DpnI | GATC | 1 cut(s) | 21 |
| DpnII | GATC | 1 cut(s) | 19 |
| Ecl136II | GAGCTC | 1 cut(s) | 120 |
| Eco24I | GRGCYC | 1 cut(s) | 122 |
| Eco47III | AGCGCT | 1 cut(s) | 195 |
| Eco53kI | GAGCTC | 1 cut(s) | 120 |
| Eco57I | CTGAAG | 1 cut(s) | 159 |
| EcoICRI | GAGCTC | 1 cut(s) | 120 |
| EcoRII | CCWGG | 1 cut(s) | 414 |
| EcoT38I | GRGCYC | 1 cut(s) | 122 |
| FaeI | CATG | 1 cut(s) | 377 |
| FaiI | YATR | 2 cut(s) | 38, 375 |
| FatI | CATG | 1 cut(s) | 373 |
| Fnu4HI | GCNGC | 5 cut(s) | 101, 104, 265, 318, 365 |
| FokI | GGATG | 1 cut(s) | 92 |
| FriOI | GRGCYC | 1 cut(s) | 122 |
| Fsp4HI | GCNGC | 5 cut(s) | 101, 104, 265, 318, 365 |
| GlaI | GCGC | 1 cut(s) | 195 |
| GluI | GCNGC | 5 cut(s) | 101, 104, 265, 318, 365 |
| GsaI | CCCAGC | 1 cut(s) | 345 |
| HaeII | RGCGCY | 1 cut(s) | 197 |
| HhaI | GCGC | 1 cut(s) | 196 |
| Hin1II | CATG | 1 cut(s) | 377 |
| Hin6I | GCGC | 1 cut(s) | 194 |
| HinP1I | GCGC | 1 cut(s) | 194 |
| HincII | GTYRAC | 1 cut(s) | 148 |
| HindII | GTYRAC | 1 cut(s) | 148 |
| HinfI | GANTC | 5 cut(s) | 40, 164, 237, 247, 288 |
| Hpy166II | GTNNAC | 1 cut(s) | 148 |
| Hpy188I | TCNGA | 9 cut(s) | 126, 139, 169, 191, 201, 220, 260, 293, 325 |
| Hpy188III | TCNNGA | 3 cut(s) | 110, 178, 391 |
| Hpy8I | GTNNAC | 1 cut(s) | 148 |
| HpyCH4III | ACNGT | 1 cut(s) | 338 |
| HpyCH4IV | ACGT | 1 cut(s) | 297 |
| HpyCH4V | TGCA | 3 cut(s) | 94, 100, 403 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 55, 91, 100, 270, 314 |
| HpyF3I | CTNAG | 2 cut(s) | 188, 290 |
| HpySE526I | ACGT | 1 cut(s) | 297 |
| Hsp92II | CATG | 1 cut(s) | 377 |
| HspAI | GCGC | 1 cut(s) | 194 |
| Kzo9I | GATC | 1 cut(s) | 19 |
| LpnPI | CCDG | 4 cut(s) | 53, 327, 353, 401 |
| Lsp1109I | GCAGC | 4 cut(s) | 112, 115, 276, 351 |
| MaeII | ACGT | 1 cut(s) | 297 |
| MalI | GATC | 1 cut(s) | 21 |
| MboI | GATC | 1 cut(s) | 19 |
| MhlI | GDGCHC | 1 cut(s) | 122 |
| MluCI | AATT | 2 cut(s) | 86, 420 |
| MlyI | GAGTC | 2 cut(s) | 173, 282 |
| MmeI | TCCRAC | 1 cut(s) | 147 |
| MnlI | CCTC | 1 cut(s) | 398 |
| MroXI | GAANNNNTTC | 1 cut(s) | 251 |
| MseI | TTAA | 1 cut(s) | 424 |
| MslI | CAYNNNNRTG | 1 cut(s) | 336 |
| MspR9I | CCNGG | 1 cut(s) | 416 |
| MvaI | CCWGG | 1 cut(s) | 416 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 55, 91, 100, 270, 314 |
| NdeII | GATC | 1 cut(s) | 19 |
| NlaIII | CATG | 1 cut(s) | 377 |
| NlaIV | GGNNCC | 1 cut(s) | 280 |
| OliI | CACNNNNGTG | 1 cut(s) | 336 |
| PdmI | GAANNNNTTC | 1 cut(s) | 251 |
| PfeI | GAWTC | 3 cut(s) | 40, 237, 247 |
| PkrI | GCNGC | 5 cut(s) | 102, 105, 266, 319, 366 |
| PleI | GAGTC | 2 cut(s) | 172, 282 |
| PpsI | GAGTC | 2 cut(s) | 172, 282 |
| Psp124BI | GAGCTC | 1 cut(s) | 122 |
| Psp6I | CCWGG | 1 cut(s) | 414 |
| PspFI | CCCAGC | 1 cut(s) | 341 |
| PspGI | CCWGG | 1 cut(s) | 414 |
| PspN4I | GGNNCC | 1 cut(s) | 280 |
| PstI | CTGCAG | 1 cut(s) | 102 |
| RseI | CAYNNNNRTG | 1 cut(s) | 336 |
| SacI | GAGCTC | 1 cut(s) | 122 |
| SaqAI | TTAA | 1 cut(s) | 424 |
| SatI | GCNGC | 5 cut(s) | 101, 104, 265, 318, 365 |
| Sau3AI | GATC | 1 cut(s) | 19 |
| SchI | GAGTC | 2 cut(s) | 173, 282 |
| ScrFI | CCNGG | 1 cut(s) | 416 |
| SduI | GDGCHC | 1 cut(s) | 122 |
| SetI | ASST | 9 cut(s) | 108, 122, 177, 269, 300, 358, 366, 390, 420 |
| SfcI | CTRYAG | 1 cut(s) | 98 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 336 |
| SmlI | CTYRAG | 4 cut(s) | 178, 268, 349, 389 |
| SmoI | CTYRAG | 4 cut(s) | 178, 268, 349, 389 |
| Sse9I | AATT | 2 cut(s) | 86, 420 |
| SsiI | CCGC | 1 cut(s) | 318 |
| SstI | GAGCTC | 1 cut(s) | 122 |
| StyD4I | CCNGG | 1 cut(s) | 414 |
| TaaI | ACNGT | 1 cut(s) | 338 |
| TaiI | ACGT | 1 cut(s) | 300 |
| TaqI | TCGA | 1 cut(s) | 313 |
| TasI | AATT | 2 cut(s) | 86, 420 |
| TauI | GCSGC | 1 cut(s) | 320 |
| TfiI | GAWTC | 3 cut(s) | 40, 237, 247 |
| Tru1I | TTAA | 1 cut(s) | 424 |
| Tru9I | TTAA | 1 cut(s) | 424 |
| TseI | GCWGC | 4 cut(s) | 100, 103, 264, 364 |
| TspDTI | ATGAA | 3 cut(s) | 53, 53, 244 |
| XmnI | GAANNNNTTC | 1 cut(s) | 251 |