ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 55 |
| AatII | GACGTC | 1 cut(s) | 8 |
| AccBSI | CCGCTC | 2 cut(s) | 266, 348 |
| AccI | GTMKAC | 1 cut(s) | 161 |
| AciI | CCGC | 6 cut(s) | 32, 35, 124, 127, 266, 348 |
| AcsI | RAATTY | 2 cut(s) | 438, 448 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AdeI | CACNNNGTG | 1 cut(s) | 571 |
| AgsI | TTSAA | 1 cut(s) | 511 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 157 |
| AluBI | AGCT | 4 cut(s) | 241, 305, 392, 507 |
| AluI | AGCT | 4 cut(s) | 241, 305, 392, 507 |
| Ama87I | CYCGRG | 1 cut(s) | 209 |
| AoxI | GGCC | 1 cut(s) | 204 |
| ApeKI | GCWGC | 3 cut(s) | 195, 430, 461 |
| ApoI | RAATTY | 2 cut(s) | 438, 448 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 304 |
| AspS9I | GGNCC | 1 cut(s) | 205 |
| AsuHPI | GGTGA | 2 cut(s) | 36, 572 |
| AvaI | CYCGRG | 1 cut(s) | 209 |
| BbsI | GAAGAC | 2 cut(s) | 51, 82 |
| BbvI | GCAGC | 3 cut(s) | 207, 417, 473 |
| BclI | TGATCA | 2 cut(s) | 394, 562 |
| BfaI | CTAG | 1 cut(s) | 417 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 212 |
| BisI | GCNGC | 6 cut(s) | 35, 127, 196, 267, 431, 462 |
| BlsI | GCNGC | 6 cut(s) | 36, 128, 197, 268, 432, 463 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 157 |
| BmeT110I | CYCGRG | 1 cut(s) | 209 |
| BmgT120I | GGNCC | 1 cut(s) | 205 |
| BmiI | GGNNCC | 1 cut(s) | 207 |
| BmsI | GCATC | 1 cut(s) | 314 |
| BpiI | GAAGAC | 2 cut(s) | 51, 82 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 2 cut(s) | 210, 340 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 25 |
| BseDI | CCNNGG | 2 cut(s) | 210, 340 |
| BseGI | GGATG | 1 cut(s) | 329 |
| BseRI | GAGGAG | 2 cut(s) | 93, 96 |
| BseXI | GCAGC | 3 cut(s) | 207, 417, 473 |
| Bsh1285I | CGRYCG | 1 cut(s) | 186 |
| BshFI | GGCC | 1 cut(s) | 206 |
| BsiEI | CGRYCG | 1 cut(s) | 186 |
| BsiHKCI | CYCGRG | 1 cut(s) | 209 |
| BsmI | GAATGC | 1 cut(s) | 238 |
| BsnI | GGCC | 1 cut(s) | 206 |
| BsoBI | CYCGRG | 1 cut(s) | 209 |
| Bsp143I | GATC | 2 cut(s) | 394, 562 |
| BspACI | CCGC | 6 cut(s) | 32, 35, 124, 127, 266, 348 |
| BspANI | GGCC | 1 cut(s) | 206 |
| BspLI | GGNNCC | 1 cut(s) | 207 |
| BspQI | GCTCTTC | 1 cut(s) | 295 |
| BsrBI | CCGCTC | 2 cut(s) | 266, 348 |
| BssECI | CCNNGG | 2 cut(s) | 210, 340 |
| BssMI | GATC | 2 cut(s) | 394, 562 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 1 cut(s) | 340 |
| Bst4CI | ACNGT | 2 cut(s) | 259, 515 |
| Bst6I | CTCTTC | 2 cut(s) | 137, 295 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstC8I | GCNNGC | 2 cut(s) | 291, 390 |
| BstF5I | GGATG | 1 cut(s) | 329 |
| BstKTI | GATC | 2 cut(s) | 397, 565 |
| BstMBI | GATC | 2 cut(s) | 394, 562 |
| BstMCI | CGRYCG | 1 cut(s) | 186 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 212, 324 |
| BstV1I | GCAGC | 3 cut(s) | 207, 417, 473 |
| BstV2I | GAAGAC | 2 cut(s) | 51, 82 |
| BsuRI | GGCC | 1 cut(s) | 206 |
| BtsCI | GGATG | 1 cut(s) | 329 |
| Cac8I | GCNNGC | 2 cut(s) | 291, 390 |
| Cfr13I | GGNCC | 1 cut(s) | 205 |
| CviAII | CATG | 4 cut(s) | 27, 140, 315, 374 |
| CviJI | RGCY | 7 cut(s) | 206, 215, 241, 293, 305, 392, 507 |
| CviKI_1 | RGCY | 7 cut(s) | 206, 215, 241, 293, 305, 392, 507 |
| DpnI | GATC | 2 cut(s) | 396, 564 |
| DpnII | GATC | 2 cut(s) | 394, 562 |
| DraIII | CACNNNGTG | 1 cut(s) | 571 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 55 |
| DriI | GACNNNNNGTC | 1 cut(s) | 157 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 55 |
| Eam1104I | CTCTTC | 2 cut(s) | 137, 295 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 157 |
| EarI | CTCTTC | 2 cut(s) | 137, 295 |
| EciI | GGCGGA | 1 cut(s) | 21 |
| Eco130I | CCWWGG | 1 cut(s) | 340 |
| Eco32I | GATATC | 1 cut(s) | 600 |
| Eco88I | CYCGRG | 1 cut(s) | 209 |
| EcoRV | GATATC | 1 cut(s) | 600 |
| EcoT14I | CCWWGG | 1 cut(s) | 340 |
| ErhI | CCWWGG | 1 cut(s) | 340 |
| FaeI | CATG | 4 cut(s) | 30, 143, 318, 377 |
| FaiI | YATR | 9 cut(s) | 28, 141, 316, 375, 466, 468, 527, 555, 596 |
| FatI | CATG | 4 cut(s) | 26, 139, 314, 373 |
| FauI | CCCGC | 2 cut(s) | 131, 341 |
| FauNDI | CATATG | 1 cut(s) | 466 |
| FbaI | TGATCA | 2 cut(s) | 394, 562 |
| FblI | GTMKAC | 1 cut(s) | 161 |
| Fnu4HI | GCNGC | 6 cut(s) | 35, 127, 196, 267, 431, 462 |
| FokI | GGATG | 1 cut(s) | 336 |
| Fsp4HI | GCNGC | 6 cut(s) | 35, 127, 196, 267, 431, 462 |
| FspBI | CTAG | 1 cut(s) | 417 |
| GluI | GCNGC | 6 cut(s) | 35, 127, 196, 267, 431, 462 |
| HaeIII | GGCC | 1 cut(s) | 206 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 4 cut(s) | 30, 143, 318, 377 |
| HinfI | GANTC | 5 cut(s) | 152, 179, 406, 411, 470 |
| HphI | GGTGA | 2 cut(s) | 36, 572 |
| Hpy166II | GTNNAC | 1 cut(s) | 162 |
| Hpy188I | TCNGA | 2 cut(s) | 263, 323 |
| Hpy188III | TCNNGA | 5 cut(s) | 229, 283, 297, 368, 474 |
| Hpy8I | GTNNAC | 1 cut(s) | 162 |
| Hpy99I | CGWCG | 1 cut(s) | 313 |
| HpyAV | CCTTC | 2 cut(s) | 51, 154 |
| HpyCH4III | ACNGT | 2 cut(s) | 259, 515 |
| HpyCH4IV | ACGT | 1 cut(s) | 5 |
| HpyCH4V | TGCA | 1 cut(s) | 236 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 212, 324 |
| HpySE526I | ACGT | 1 cut(s) | 5 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 4 cut(s) | 30, 143, 318, 377 |
| Ksp22I | TGATCA | 2 cut(s) | 394, 562 |
| Kzo9I | GATC | 2 cut(s) | 394, 562 |
| LguI | GCTCTTC | 1 cut(s) | 295 |
| LmnI | GCTCC | 1 cut(s) | 345 |
| LpnPI | CCDG | 4 cut(s) | 186, 268, 282, 468 |
| Lsp1109I | GCAGC | 3 cut(s) | 207, 417, 473 |
| LweI | GCATC | 1 cut(s) | 314 |
| MaeI | CTAG | 1 cut(s) | 417 |
| MaeII | ACGT | 1 cut(s) | 5 |
| MaeIII | GTNAC | 1 cut(s) | 571 |
| MalI | GATC | 2 cut(s) | 396, 564 |
| MbiI | CCGCTC | 2 cut(s) | 266, 348 |
| MboI | GATC | 2 cut(s) | 394, 562 |
| MboII | GAAGA | 6 cut(s) | 51, 82, 124, 312, 485, 545 |
| MluCI | AATT | 7 cut(s) | 79, 438, 448, 477, 498, 544, 624 |
| MlyI | GAGTC | 2 cut(s) | 146, 415 |
| MroXI | GAANNNNTTC | 1 cut(s) | 304 |
| MseI | TTAA | 2 cut(s) | 353, 401 |
| MslI | CAYNNNNRTG | 1 cut(s) | 25 |
| Mva1269I | GAATGC | 1 cut(s) | 238 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 212, 324 |
| NdeI | CATATG | 1 cut(s) | 466 |
| NdeII | GATC | 2 cut(s) | 394, 562 |
| NlaIII | CATG | 4 cut(s) | 30, 143, 318, 377 |
| NlaIV | GGNNCC | 1 cut(s) | 207 |
| NmuCI | GTSAC | 1 cut(s) | 571 |
| PciSI | GCTCTTC | 1 cut(s) | 295 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 183 |
| PctI | GAATGC | 1 cut(s) | 238 |
| PdmI | GAANNNNTTC | 1 cut(s) | 304 |
| PfeI | GAWTC | 3 cut(s) | 179, 411, 470 |
| PkrI | GCNGC | 6 cut(s) | 36, 128, 197, 268, 432, 463 |
| PleI | GAGTC | 2 cut(s) | 146, 414 |
| PpsI | GAGTC | 2 cut(s) | 146, 414 |
| PspN4I | GGNNCC | 1 cut(s) | 207 |
| PspPI | GGNCC | 1 cut(s) | 205 |
| RseI | CAYNNNNRTG | 1 cut(s) | 25 |
| SapI | GCTCTTC | 1 cut(s) | 295 |
| SaqAI | TTAA | 2 cut(s) | 353, 401 |
| SatI | GCNGC | 6 cut(s) | 35, 127, 196, 267, 431, 462 |
| Sau3AI | GATC | 2 cut(s) | 394, 562 |
| Sau96I | GGNCC | 1 cut(s) | 205 |
| SchI | GAGTC | 2 cut(s) | 146, 415 |
| SetI | ASST | 8 cut(s) | 8, 25, 55, 243, 307, 394, 509, 562 |
| SfaNI | GCATC | 1 cut(s) | 314 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 25 |
| Sse9I | AATT | 7 cut(s) | 79, 438, 448, 477, 498, 544, 624 |
| SsiI | CCGC | 6 cut(s) | 32, 35, 124, 127, 266, 348 |
| SspMI | CTAG | 1 cut(s) | 417 |
| StyI | CCWWGG | 1 cut(s) | 340 |
| TaaI | ACNGT | 2 cut(s) | 259, 515 |
| TaiI | ACGT | 1 cut(s) | 8 |
| TaqI | TCGA | 6 cut(s) | 17, 147, 182, 228, 409, 475 |
| TaqII | GACCGA | 1 cut(s) | 200 |
| TasI | AATT | 7 cut(s) | 79, 438, 448, 477, 498, 544, 624 |
| TauI | GCSGC | 3 cut(s) | 37, 129, 269 |
| TfiI | GAWTC | 3 cut(s) | 179, 411, 470 |
| Tru1I | TTAA | 2 cut(s) | 353, 401 |
| Tru9I | TTAA | 2 cut(s) | 353, 401 |
| TseFI | GTSAC | 1 cut(s) | 571 |
| TseI | GCWGC | 3 cut(s) | 195, 430, 461 |
| Tsp45I | GTSAC | 1 cut(s) | 571 |
| TspDTI | ATGAA | 1 cut(s) | 375 |
| TspGWI | ACGGA | 1 cut(s) | 45 |
| XapI | RAATTY | 2 cut(s) | 438, 448 |
| XmiI | GTMKAC | 1 cut(s) | 161 |
| XmnI | GAANNNNTTC | 1 cut(s) | 304 |
| XspI | CTAG | 1 cut(s) | 417 |
| ZraI | GACGTC | 1 cut(s) | 6 |