ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 275 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 285 |
| AccIII | TCCGGA | 1 cut(s) | 127 |
| AclWI | GGATC | 1 cut(s) | 105 |
| AfaI | GTAC | 1 cut(s) | 322 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 285 |
| AgsI | TTSAA | 1 cut(s) | 225 |
| AjnI | CCWGG | 1 cut(s) | 183 |
| AluBI | AGCT | 1 cut(s) | 140 |
| AluI | AGCT | 1 cut(s) | 140 |
| AlwI | GGATC | 1 cut(s) | 105 |
| Aor13HI | TCCGGA | 1 cut(s) | 127 |
| ApeKI | GCWGC | 1 cut(s) | 137 |
| AsuC2I | CCSGG | 1 cut(s) | 210 |
| AsuHPI | GGTGA | 2 cut(s) | 17, 198 |
| BaeGI | GKGCMC | 1 cut(s) | 278 |
| BanI | GGYRCC | 1 cut(s) | 275 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 205, 237 |
| BbvI | GCAGC | 1 cut(s) | 149 |
| BccI | CCATC | 1 cut(s) | 287 |
| BceAI | ACGGC | 1 cut(s) | 157 |
| BciT130I | CCWGG | 1 cut(s) | 185 |
| BcnI | CCSGG | 1 cut(s) | 210 |
| BfaI | CTAG | 1 cut(s) | 14 |
| BisI | GCNGC | 1 cut(s) | 138 |
| BlsI | GCNGC | 1 cut(s) | 139 |
| Bme1390I | CCNGG | 2 cut(s) | 185, 210 |
| BmiI | GGNNCC | 1 cut(s) | 277 |
| BmrFI | CCNGG | 2 cut(s) | 185, 210 |
| BmsI | GCATC | 1 cut(s) | 298 |
| BpuMI | CCSGG | 1 cut(s) | 210 |
| BsaJI | CCNNGG | 1 cut(s) | 85 |
| BsaWI | WCCGGW | 1 cut(s) | 127 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 285 |
| BseAI | TCCGGA | 1 cut(s) | 127 |
| BseBI | CCWGG | 1 cut(s) | 185 |
| BseDI | CCNNGG | 1 cut(s) | 85 |
| BseGI | GGATG | 1 cut(s) | 289 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 285 |
| BseSI | GKGCMC | 1 cut(s) | 278 |
| BseXI | GCAGC | 1 cut(s) | 149 |
| BshNI | GGYRCC | 1 cut(s) | 275 |
| BsiSI | CCGG | 3 cut(s) | 128, 209, 293 |
| BslFI | GGGAC | 1 cut(s) | 31 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 285 |
| BsmFI | GGGAC | 1 cut(s) | 31 |
| Bsp1286I | GDGCHC | 1 cut(s) | 278 |
| Bsp13I | TCCGGA | 1 cut(s) | 127 |
| Bsp143I | GATC | 1 cut(s) | 97 |
| BspEI | TCCGGA | 1 cut(s) | 127 |
| BspLI | GGNNCC | 1 cut(s) | 277 |
| BspPI | GGATC | 1 cut(s) | 105 |
| BspT107I | GGYRCC | 1 cut(s) | 275 |
| BssECI | CCNNGG | 1 cut(s) | 85 |
| BssMI | GATC | 1 cut(s) | 97 |
| Bst2UI | CCWGG | 1 cut(s) | 185 |
| Bst6I | CTCTTC | 1 cut(s) | 258 |
| BstF5I | GGATG | 1 cut(s) | 289 |
| BstKTI | GATC | 1 cut(s) | 100 |
| BstMBI | GATC | 1 cut(s) | 97 |
| BstNI | CCWGG | 1 cut(s) | 185 |
| BstSCI | CCNGG | 2 cut(s) | 183, 208 |
| BstSLI | GKGCMC | 1 cut(s) | 278 |
| BstV1I | GCAGC | 1 cut(s) | 149 |
| BstX2I | RGATCY | 1 cut(s) | 97 |
| BstYI | RGATCY | 1 cut(s) | 97 |
| BtsCI | GGATG | 1 cut(s) | 289 |
| BtsI | GCAGTG | 1 cut(s) | 275 |
| BtsIMutI | CAGTG | 1 cut(s) | 275 |
| CsiI | ACCWGGT | 1 cut(s) | 183 |
| Csp6I | GTAC | 1 cut(s) | 321 |
| CviJI | RGCY | 6 cut(s) | 23, 140, 172, 197, 296, 304 |
| CviKI_1 | RGCY | 6 cut(s) | 23, 140, 172, 197, 296, 304 |
| CviQI | GTAC | 1 cut(s) | 321 |
| DpnI | GATC | 1 cut(s) | 99 |
| DpnII | GATC | 1 cut(s) | 97 |
| Eam1104I | CTCTTC | 1 cut(s) | 258 |
| EarI | CTCTTC | 1 cut(s) | 258 |
| Eco32I | GATATC | 1 cut(s) | 109 |
| EcoRII | CCWGG | 1 cut(s) | 183 |
| EcoRV | GATATC | 1 cut(s) | 109 |
| FaiI | YATR | 8 cut(s) | 80, 156, 215, 235, 237, 266, 284, 286 |
| FaqI | GGGAC | 1 cut(s) | 31 |
| FauNDI | CATATG | 1 cut(s) | 284 |
| Fnu4HI | GCNGC | 1 cut(s) | 138 |
| FokI | GGATG | 1 cut(s) | 276 |
| Fsp4HI | GCNGC | 1 cut(s) | 138 |
| FspBI | CTAG | 1 cut(s) | 14 |
| GluI | GCNGC | 1 cut(s) | 138 |
| HapII | CCGG | 3 cut(s) | 128, 209, 293 |
| HincII | GTYRAC | 1 cut(s) | 219 |
| HindII | GTYRAC | 1 cut(s) | 219 |
| HinfI | GANTC | 1 cut(s) | 200 |
| HpaI | GTTAAC | 1 cut(s) | 219 |
| HpaII | CCGG | 3 cut(s) | 128, 209, 293 |
| HphI | GGTGA | 2 cut(s) | 17, 198 |
| Hpy166II | GTNNAC | 1 cut(s) | 219 |
| Hpy188III | TCNNGA | 1 cut(s) | 128 |
| Hpy8I | GTNNAC | 1 cut(s) | 219 |
| HpyAV | CCTTC | 1 cut(s) | 254 |
| HpyCH4V | TGCA | 2 cut(s) | 137, 268 |
| Kpn2I | TCCGGA | 1 cut(s) | 127 |
| KspAI | GTTAAC | 1 cut(s) | 219 |
| Kzo9I | GATC | 1 cut(s) | 97 |
| LpnPI | CCDG | 8 cut(s) | 104, 117, 141, 170, 197, 222, 306, 314 |
| Lsp1109I | GCAGC | 1 cut(s) | 149 |
| LweI | GCATC | 1 cut(s) | 298 |
| MabI | ACCWGGT | 1 cut(s) | 183 |
| MaeI | CTAG | 1 cut(s) | 14 |
| MaeIII | GTNAC | 2 cut(s) | 5, 179 |
| MalI | GATC | 1 cut(s) | 99 |
| MboI | GATC | 1 cut(s) | 97 |
| MboII | GAAGA | 2 cut(s) | 195, 245 |
| MflI | RGATCY | 1 cut(s) | 97 |
| MhlI | GDGCHC | 1 cut(s) | 278 |
| MluCI | AATT | 2 cut(s) | 132, 238 |
| MnlI | CCTC | 7 cut(s) | 49, 95, 223, 261, 267, 271, 315 |
| MroI | TCCGGA | 1 cut(s) | 127 |
| MseI | TTAA | 3 cut(s) | 27, 176, 218 |
| MspI | CCGG | 3 cut(s) | 128, 209, 293 |
| MspR9I | CCNGG | 2 cut(s) | 185, 210 |
| MvaI | CCWGG | 1 cut(s) | 185 |
| NciI | CCSGG | 1 cut(s) | 210 |
| NdeI | CATATG | 1 cut(s) | 284 |
| NdeII | GATC | 1 cut(s) | 97 |
| NlaIV | GGNNCC | 1 cut(s) | 277 |
| NmuCI | GTSAC | 2 cut(s) | 5, 179 |
| PfeI | GAWTC | 1 cut(s) | 200 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 285 |
| PkrI | GCNGC | 1 cut(s) | 139 |
| Psp6I | CCWGG | 1 cut(s) | 183 |
| PspGI | CCWGG | 1 cut(s) | 183 |
| PspN4I | GGNNCC | 1 cut(s) | 277 |
| PsuI | RGATCY | 1 cut(s) | 97 |
| RsaI | GTAC | 1 cut(s) | 322 |
| RsaNI | GTAC | 1 cut(s) | 321 |
| SaqAI | TTAA | 3 cut(s) | 27, 176, 218 |
| SatI | GCNGC | 1 cut(s) | 138 |
| Sau3AI | GATC | 1 cut(s) | 97 |
| ScrFI | CCNGG | 2 cut(s) | 185, 210 |
| SduI | GDGCHC | 1 cut(s) | 278 |
| SetI | ASST | 4 cut(s) | 106, 123, 142, 189 |
| SexAI | ACCWGGT | 1 cut(s) | 183 |
| SfaNI | GCATC | 1 cut(s) | 298 |
| Sse9I | AATT | 2 cut(s) | 132, 238 |
| SspMI | CTAG | 1 cut(s) | 14 |
| StyD4I | CCNGG | 2 cut(s) | 183, 208 |
| TaqI | TCGA | 1 cut(s) | 33 |
| TasI | AATT | 2 cut(s) | 132, 238 |
| TatI | WGTACW | 1 cut(s) | 320 |
| TfiI | GAWTC | 1 cut(s) | 200 |
| Tru1I | TTAA | 3 cut(s) | 27, 176, 218 |
| Tru9I | TTAA | 3 cut(s) | 27, 176, 218 |
| TscAI | CASTG | 1 cut(s) | 275 |
| TseFI | GTSAC | 2 cut(s) | 5, 179 |
| TseI | GCWGC | 1 cut(s) | 137 |
| Tsp45I | GTSAC | 2 cut(s) | 5, 179 |
| TspRI | CASTG | 1 cut(s) | 275 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 285 |
| XspI | CTAG | 1 cut(s) | 14 |