ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 86 - 168 | 2e-23 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 292 |
| AccB1I | GGYRCC | 1 cut(s) | 42 |
| AccII | CGCG | 1 cut(s) | 408 |
| AciI | CCGC | 2 cut(s) | 25, 408 |
| AcuI | CTGAAG | 1 cut(s) | 225 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 52 |
| AflIII | ACRYGT | 1 cut(s) | 135 |
| AgsI | TTSAA | 2 cut(s) | 370, 401 |
| AluBI | AGCT | 1 cut(s) | 58 |
| AluI | AGCT | 1 cut(s) | 58 |
| Alw26I | GTCTC | 1 cut(s) | 351 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 183 |
| AspS9I | GGNCC | 1 cut(s) | 321 |
| AvaII | GGWCC | 1 cut(s) | 321 |
| BaeGI | GKGCMC | 1 cut(s) | 45 |
| BanI | GGYRCC | 1 cut(s) | 42 |
| BbsI | GAAGAC | 1 cut(s) | 437 |
| BccI | CCATC | 2 cut(s) | 80, 107 |
| BcoDI | GTCTC | 1 cut(s) | 351 |
| BfuAI | ACCTGC | 1 cut(s) | 292 |
| Bme18I | GGWCC | 1 cut(s) | 321 |
| BmgT120I | GGNCC | 1 cut(s) | 321 |
| BmiI | GGNNCC | 1 cut(s) | 44 |
| BmsI | GCATC | 3 cut(s) | 16, 237, 431 |
| BpiI | GAAGAC | 1 cut(s) | 437 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 52 |
| Bse1I | ACTGG | 1 cut(s) | 155 |
| BseGI | GGATG | 3 cut(s) | 91, 118, 252 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BseMII | CTCAG | 1 cut(s) | 218 |
| BseNI | ACTGG | 1 cut(s) | 155 |
| BseSI | GKGCMC | 1 cut(s) | 45 |
| BseYI | CCCAGC | 1 cut(s) | 38 |
| Bsh1236I | CGCG | 1 cut(s) | 408 |
| BshNI | GGYRCC | 1 cut(s) | 42 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 52 |
| BsmAI | GTCTC | 1 cut(s) | 351 |
| BsmI | GAATGC | 1 cut(s) | 287 |
| Bsp1286I | GDGCHC | 1 cut(s) | 45 |
| BspACI | CCGC | 2 cut(s) | 25, 408 |
| BspCNI | CTCAG | 1 cut(s) | 217 |
| BspFNI | CGCG | 1 cut(s) | 408 |
| BspLI | GGNNCC | 1 cut(s) | 44 |
| BspMI | ACCTGC | 1 cut(s) | 292 |
| BspT107I | GGYRCC | 1 cut(s) | 42 |
| BsrI | ACTGG | 1 cut(s) | 155 |
| BstDEI | CTNAG | 1 cut(s) | 204 |
| BstF5I | GGATG | 3 cut(s) | 91, 118, 252 |
| BstFNI | CGCG | 1 cut(s) | 408 |
| BstMAI | GTCTC | 1 cut(s) | 351 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 263 |
| BstNSI | RCATGY | 2 cut(s) | 139, 346 |
| BstSLI | GKGCMC | 1 cut(s) | 45 |
| BstUI | CGCG | 1 cut(s) | 408 |
| BstV2I | GAAGAC | 1 cut(s) | 437 |
| BtsCI | GGATG | 3 cut(s) | 91, 118, 252 |
| BtsIMutI | CAGTG | 1 cut(s) | 162 |
| BveI | ACCTGC | 1 cut(s) | 292 |
| Cfr13I | GGNCC | 1 cut(s) | 321 |
| CviAII | CATG | 3 cut(s) | 136, 339, 343 |
| CviJI | RGCY | 5 cut(s) | 58, 74, 90, 356, 436 |
| CviKI_1 | RGCY | 5 cut(s) | 58, 74, 90, 356, 436 |
| DdeI | CTNAG | 1 cut(s) | 204 |
| Eco47I | GGWCC | 1 cut(s) | 321 |
| Eco57I | CTGAAG | 1 cut(s) | 225 |
| EcoT22I | ATGCAT | 1 cut(s) | 344 |
| FaeI | CATG | 3 cut(s) | 139, 342, 346 |
| FatI | CATG | 3 cut(s) | 135, 338, 342 |
| FauI | CCCGC | 1 cut(s) | 18 |
| FauNDI | CATATG | 1 cut(s) | 81 |
| FokI | GGATG | 3 cut(s) | 98, 125, 259 |
| GsaI | CCCAGC | 1 cut(s) | 42 |
| Hin1II | CATG | 3 cut(s) | 139, 342, 346 |
| HinfI | GANTC | 2 cut(s) | 229, 455 |
| Hpy166II | GTNNAC | 1 cut(s) | 311 |
| Hpy188I | TCNGA | 2 cut(s) | 100, 388 |
| Hpy188III | TCNNGA | 2 cut(s) | 176, 206 |
| Hpy8I | GTNNAC | 1 cut(s) | 311 |
| HpyAV | CCTTC | 2 cut(s) | 182, 407 |
| HpyCH4V | TGCA | 6 cut(s) | 7, 79, 287, 342, 422, 491 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 263 |
| HpyF3I | CTNAG | 1 cut(s) | 204 |
| Hsp92II | CATG | 3 cut(s) | 139, 342, 346 |
| LmnI | GCTCC | 1 cut(s) | 55 |
| LpnPI | CCDG | 5 cut(s) | 24, 168, 191, 228, 297 |
| LweI | GCATC | 3 cut(s) | 16, 237, 431 |
| MboII | GAAGA | 6 cut(s) | 134, 137, 231, 323, 437, 467 |
| MhlI | GDGCHC | 1 cut(s) | 45 |
| MluCI | AATT | 5 cut(s) | 189, 199, 301, 315, 325 |
| MlyI | GAGTC | 2 cut(s) | 223, 464 |
| MnlI | CCTC | 3 cut(s) | 63, 103, 345 |
| Mph1103I | ATGCAT | 1 cut(s) | 344 |
| MroXI | GAANNNNTTC | 1 cut(s) | 183 |
| MseI | TTAA | 1 cut(s) | 300 |
| MslI | CAYNNNNRTG | 3 cut(s) | 84, 427, 499 |
| Mva1269I | GAATGC | 1 cut(s) | 287 |
| MvnI | CGCG | 1 cut(s) | 408 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 263 |
| NdeI | CATATG | 1 cut(s) | 81 |
| NlaIII | CATG | 3 cut(s) | 139, 342, 346 |
| NlaIV | GGNNCC | 1 cut(s) | 44 |
| NsiI | ATGCAT | 1 cut(s) | 344 |
| NspI | RCATGY | 2 cut(s) | 139, 346 |
| PciI | ACATGT | 1 cut(s) | 135 |
| PctI | GAATGC | 1 cut(s) | 287 |
| PdmI | GAANNNNTTC | 1 cut(s) | 183 |
| PleI | GAGTC | 2 cut(s) | 223, 463 |
| PpsI | GAGTC | 2 cut(s) | 223, 463 |
| PscI | ACATGT | 1 cut(s) | 135 |
| PspFI | CCCAGC | 1 cut(s) | 38 |
| PspN4I | GGNNCC | 1 cut(s) | 44 |
| PspPI | GGNCC | 1 cut(s) | 321 |
| RseI | CAYNNNNRTG | 3 cut(s) | 84, 427, 499 |
| SaqAI | TTAA | 1 cut(s) | 300 |
| Sau96I | GGNCC | 1 cut(s) | 321 |
| SchI | GAGTC | 2 cut(s) | 223, 464 |
| SduI | GDGCHC | 1 cut(s) | 45 |
| SetI | ASST | 4 cut(s) | 60, 286, 376, 431 |
| SfaNI | GCATC | 3 cut(s) | 16, 237, 431 |
| SinI | GGWCC | 1 cut(s) | 321 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 84, 427, 499 |
| Sse9I | AATT | 5 cut(s) | 189, 199, 301, 315, 325 |
| SsiI | CCGC | 2 cut(s) | 25, 408 |
| TaqI | TCGA | 2 cut(s) | 175, 259 |
| TasI | AATT | 5 cut(s) | 189, 199, 301, 315, 325 |
| Tru1I | TTAA | 1 cut(s) | 300 |
| Tru9I | TTAA | 1 cut(s) | 300 |
| TscAI | CASTG | 1 cut(s) | 162 |
| TspDTI | ATGAA | 6 cut(s) | 94, 225, 261, 437, 467, 474 |
| TspRI | CASTG | 1 cut(s) | 162 |
| VpaK11BI | GGWCC | 1 cut(s) | 321 |
| XceI | RCATGY | 2 cut(s) | 139, 346 |
| XmnI | GAANNNNTTC | 1 cut(s) | 183 |
| Zsp2I | ATGCAT | 1 cut(s) | 344 |