ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 469 |
| AciI | CCGC | 8 cut(s) | 48, 98, 104, 117, 247, 293, 433, 442 |
| AclWI | GGATC | 2 cut(s) | 205, 215 |
| AcsI | RAATTY | 2 cut(s) | 537, 641 |
| AfaI | GTAC | 1 cut(s) | 92 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 94, 130, 131 |
| AflIII | ACRYGT | 2 cut(s) | 307, 467 |
| AgsI | TTSAA | 3 cut(s) | 321, 607, 641 |
| AjiI | CACGTC | 1 cut(s) | 308 |
| AjnI | CCWGG | 2 cut(s) | 124, 403 |
| AluBI | AGCT | 1 cut(s) | 616 |
| AluI | AGCT | 1 cut(s) | 616 |
| Alw26I | GTCTC | 1 cut(s) | 441 |
| AlwI | GGATC | 2 cut(s) | 205, 215 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 163 |
| AoxI | GGCC | 1 cut(s) | 517 |
| ApeKI | GCWGC | 1 cut(s) | 412 |
| ApoI | RAATTY | 2 cut(s) | 537, 641 |
| AspS9I | GGNCC | 1 cut(s) | 518 |
| AsuHPI | GGTGA | 1 cut(s) | 545 |
| BanII | GRGCYC | 1 cut(s) | 19 |
| BbsI | GAAGAC | 1 cut(s) | 266 |
| BbvI | GCAGC | 1 cut(s) | 424 |
| BccI | CCATC | 3 cut(s) | 6, 488, 613 |
| BceAI | ACGGC | 2 cut(s) | 111, 540 |
| BciT130I | CCWGG | 2 cut(s) | 126, 405 |
| BcoDI | GTCTC | 1 cut(s) | 441 |
| BisI | GCNGC | 1 cut(s) | 413 |
| BlsI | GCNGC | 1 cut(s) | 414 |
| Bme1390I | CCNGG | 2 cut(s) | 126, 405 |
| BmgBI | CACGTC | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 1 cut(s) | 518 |
| BmiI | GGNNCC | 2 cut(s) | 402, 459 |
| BmrFI | CCNGG | 2 cut(s) | 126, 405 |
| BpiI | GAAGAC | 1 cut(s) | 266 |
| BsaI | GGTCTC | 1 cut(s) | 441 |
| BsaJI | CCNNGG | 3 cut(s) | 124, 404, 473 |
| BsaWI | WCCGGW | 1 cut(s) | 87 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 94, 130, 131 |
| Bse118I | RCCGGY | 1 cut(s) | 415 |
| Bse3DI | GCAATG | 2 cut(s) | 112, 604 |
| BseBI | CCWGG | 2 cut(s) | 126, 405 |
| BseDI | CCNNGG | 3 cut(s) | 124, 404, 473 |
| BseGI | GGATG | 1 cut(s) | 344 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 94, 130, 131 |
| BseMI | GCAATG | 2 cut(s) | 112, 604 |
| BseXI | GCAGC | 1 cut(s) | 424 |
| BsgI | GTGCAG | 1 cut(s) | 431 |
| Bsh1236I | CGCG | 1 cut(s) | 469 |
| Bsh1285I | CGRYCG | 1 cut(s) | 173 |
| BshFI | GGCC | 1 cut(s) | 519 |
| BsiEI | CGRYCG | 1 cut(s) | 173 |
| BsiSI | CCGG | 2 cut(s) | 88, 416 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 94, 130, 131 |
| BsmAI | GTCTC | 1 cut(s) | 441 |
| BsnI | GGCC | 1 cut(s) | 519 |
| Bso31I | GGTCTC | 1 cut(s) | 441 |
| Bsp1286I | GDGCHC | 1 cut(s) | 19 |
| Bsp143I | GATC | 3 cut(s) | 37, 210, 220 |
| Bsp19I | CCATGG | 1 cut(s) | 473 |
| BspACI | CCGC | 8 cut(s) | 48, 98, 104, 117, 247, 293, 433, 442 |
| BspANI | GGCC | 1 cut(s) | 519 |
| BspFNI | CGCG | 1 cut(s) | 469 |
| BspLI | GGNNCC | 2 cut(s) | 402, 459 |
| BspPI | GGATC | 2 cut(s) | 205, 215 |
| BspQI | GCTCTTC | 1 cut(s) | 24 |
| BspTNI | GGTCTC | 1 cut(s) | 441 |
| BsrDI | GCAATG | 2 cut(s) | 112, 604 |
| BsrFI | RCCGGY | 1 cut(s) | 415 |
| BssAI | RCCGGY | 1 cut(s) | 415 |
| BssECI | CCNNGG | 3 cut(s) | 124, 404, 473 |
| BssMI | GATC | 3 cut(s) | 37, 210, 220 |
| BssT1I | CCWWGG | 1 cut(s) | 473 |
| Bst2UI | CCWGG | 2 cut(s) | 126, 405 |
| Bst6I | CTCTTC | 1 cut(s) | 24 |
| BstC8I | GCNNGC | 1 cut(s) | 106 |
| BstDEI | CTNAG | 1 cut(s) | 302 |
| BstDSI | CCRYGG | 1 cut(s) | 473 |
| BstF5I | GGATG | 1 cut(s) | 344 |
| BstFNI | CGCG | 1 cut(s) | 469 |
| BstKTI | GATC | 3 cut(s) | 40, 213, 223 |
| BstMAI | GTCTC | 1 cut(s) | 441 |
| BstMBI | GATC | 3 cut(s) | 37, 210, 220 |
| BstMCI | CGRYCG | 1 cut(s) | 173 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 114, 400, 409, 516 |
| BstNI | CCWGG | 2 cut(s) | 126, 405 |
| BstSCI | CCNGG | 2 cut(s) | 124, 403 |
| BstUI | CGCG | 1 cut(s) | 469 |
| BstV1I | GCAGC | 1 cut(s) | 424 |
| BstV2I | GAAGAC | 1 cut(s) | 266 |
| BsuRI | GGCC | 1 cut(s) | 519 |
| BtgI | CCRYGG | 1 cut(s) | 473 |
| BtrI | CACGTC | 1 cut(s) | 308 |
| BtsCI | GGATG | 1 cut(s) | 344 |
| Cac8I | GCNNGC | 1 cut(s) | 106 |
| CaiI | CAGNNNCTG | 1 cut(s) | 163 |
| Cfr10I | RCCGGY | 1 cut(s) | 415 |
| Cfr13I | GGNCC | 1 cut(s) | 518 |
| CseI | GACGC | 1 cut(s) | 458 |
| Csp6I | GTAC | 1 cut(s) | 91 |
| CviAII | CATG | 2 cut(s) | 474, 656 |
| CviQI | GTAC | 1 cut(s) | 91 |
| DdeI | CTNAG | 1 cut(s) | 302 |
| DpnI | GATC | 3 cut(s) | 39, 212, 222 |
| DpnII | GATC | 3 cut(s) | 37, 210, 220 |
| Eam1104I | CTCTTC | 1 cut(s) | 24 |
| EarI | CTCTTC | 1 cut(s) | 24 |
| EciI | GGCGGA | 2 cut(s) | 63, 113 |
| Eco130I | CCWWGG | 1 cut(s) | 473 |
| Eco24I | GRGCYC | 1 cut(s) | 19 |
| Eco31I | GGTCTC | 1 cut(s) | 441 |
| EcoRII | CCWGG | 2 cut(s) | 124, 403 |
| EcoT14I | CCWWGG | 1 cut(s) | 473 |
| EcoT38I | GRGCYC | 1 cut(s) | 19 |
| ErhI | CCWWGG | 1 cut(s) | 473 |
| FaeI | CATG | 2 cut(s) | 477, 659 |
| FaiI | YATR | 6 cut(s) | 256, 267, 454, 475, 564, 657 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 498, 530 |
| FatI | CATG | 2 cut(s) | 473, 655 |
| FauI | CCCGC | 2 cut(s) | 97, 449 |
| Fnu4HI | GCNGC | 1 cut(s) | 413 |
| FokI | GGATG | 1 cut(s) | 331 |
| FriOI | GRGCYC | 1 cut(s) | 19 |
| Fsp4HI | GCNGC | 1 cut(s) | 413 |
| GluI | GCNGC | 1 cut(s) | 413 |
| HaeIII | GGCC | 1 cut(s) | 519 |
| HapII | CCGG | 2 cut(s) | 88, 416 |
| HgaI | GACGC | 1 cut(s) | 458 |
| Hin1II | CATG | 2 cut(s) | 477, 659 |
| HinfI | GANTC | 2 cut(s) | 204, 383 |
| HpaII | CCGG | 2 cut(s) | 88, 416 |
| HphI | GGTGA | 1 cut(s) | 545 |
| Hpy166II | GTNNAC | 2 cut(s) | 93, 342 |
| Hpy188I | TCNGA | 3 cut(s) | 148, 186, 613 |
| Hpy188III | TCNNGA | 1 cut(s) | 208 |
| Hpy8I | GTNNAC | 2 cut(s) | 93, 342 |
| Hpy99I | CGWCG | 2 cut(s) | 221, 233 |
| HpyAV | CCTTC | 2 cut(s) | 135, 306 |
| HpyCH4IV | ACGT | 1 cut(s) | 307 |
| HpyCH4V | TGCA | 3 cut(s) | 412, 647, 655 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 114, 400, 409, 516 |
| HpyF3I | CTNAG | 1 cut(s) | 302 |
| HpySE526I | ACGT | 1 cut(s) | 307 |
| Hsp92II | CATG | 2 cut(s) | 477, 659 |
| Kzo9I | GATC | 3 cut(s) | 37, 210, 220 |
| LguI | GCTCTTC | 1 cut(s) | 24 |
| LmnI | GCTCC | 2 cut(s) | 400, 613 |
| Lsp1109I | GCAGC | 1 cut(s) | 424 |
| MaeII | ACGT | 1 cut(s) | 307 |
| MalI | GATC | 3 cut(s) | 39, 212, 222 |
| MboI | GATC | 3 cut(s) | 37, 210, 220 |
| MboII | GAAGA | 2 cut(s) | 11, 271 |
| MhlI | GDGCHC | 1 cut(s) | 19 |
| MluCI | AATT | 4 cut(s) | 388, 537, 607, 641 |
| MluI | ACGCGT | 1 cut(s) | 467 |
| MmeI | TCCRAC | 2 cut(s) | 360, 488 |
| MnlI | CCTC | 9 cut(s) | 44, 73, 94, 146, 153, 360, 369, 471, 563 |
| MseI | TTAA | 1 cut(s) | 336 |
| MslI | CAYNNNNRTG | 1 cut(s) | 654 |
| MspI | CCGG | 2 cut(s) | 88, 416 |
| MspR9I | CCNGG | 2 cut(s) | 126, 405 |
| MvaI | CCWGG | 2 cut(s) | 126, 405 |
| MvnI | CGCG | 1 cut(s) | 469 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 114, 400, 409, 516 |
| NcoI | CCATGG | 1 cut(s) | 473 |
| NdeII | GATC | 3 cut(s) | 37, 210, 220 |
| NlaIII | CATG | 2 cut(s) | 477, 659 |
| NlaIV | GGNNCC | 2 cut(s) | 402, 459 |
| PciSI | GCTCTTC | 1 cut(s) | 24 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 213, 225 |
| PfeI | GAWTC | 2 cut(s) | 204, 383 |
| PflFI | GACNNNGTC | 1 cut(s) | 233 |
| PkrI | GCNGC | 1 cut(s) | 414 |
| Psp6I | CCWGG | 2 cut(s) | 124, 403 |
| PspGI | CCWGG | 2 cut(s) | 124, 403 |
| PspN4I | GGNNCC | 2 cut(s) | 402, 459 |
| PspPI | GGNCC | 1 cut(s) | 518 |
| PstNI | CAGNNNCTG | 1 cut(s) | 163 |
| PsyI | GACNNNGTC | 1 cut(s) | 233 |
| RsaI | GTAC | 1 cut(s) | 92 |
| RsaNI | GTAC | 1 cut(s) | 91 |
| RseI | CAYNNNNRTG | 1 cut(s) | 654 |
| SapI | GCTCTTC | 1 cut(s) | 24 |
| SaqAI | TTAA | 1 cut(s) | 336 |
| SatI | GCNGC | 1 cut(s) | 413 |
| Sau3AI | GATC | 3 cut(s) | 37, 210, 220 |
| Sau96I | GGNCC | 1 cut(s) | 518 |
| ScrFI | CCNGG | 2 cut(s) | 126, 405 |
| SduI | GDGCHC | 1 cut(s) | 19 |
| SetI | ASST | 9 cut(s) | 55, 146, 180, 266, 310, 380, 574, 587, 618 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 654 |
| Sse9I | AATT | 4 cut(s) | 388, 537, 607, 641 |
| SsiI | CCGC | 8 cut(s) | 48, 98, 104, 117, 247, 293, 433, 442 |
| StyD4I | CCNGG | 2 cut(s) | 124, 403 |
| StyI | CCWWGG | 1 cut(s) | 473 |
| TaiI | ACGT | 1 cut(s) | 310 |
| TaqI | TCGA | 2 cut(s) | 36, 59 |
| TaqII | GACCGA | 1 cut(s) | 187 |
| TasI | AATT | 4 cut(s) | 388, 537, 607, 641 |
| TfiI | GAWTC | 2 cut(s) | 204, 383 |
| Tru1I | TTAA | 1 cut(s) | 336 |
| Tru9I | TTAA | 1 cut(s) | 336 |
| TseI | GCWGC | 1 cut(s) | 412 |
| TspGWI | ACGGA | 2 cut(s) | 92, 165 |
| Tth111I | GACNNNGTC | 1 cut(s) | 233 |
| XapI | RAATTY | 2 cut(s) | 537, 641 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 394, 471 |