ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 95 - 181 | 4.6e-20 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 319 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 584 |
| AccII | CGCG | 1 cut(s) | 444 |
| AciI | CCGC | 1 cut(s) | 444 |
| AcsI | RAATTY | 2 cut(s) | 265, 646 |
| AcuI | CTGAAG | 1 cut(s) | 258 |
| AcyI | GRCGYC | 1 cut(s) | 316 |
| AfaI | GTAC | 2 cut(s) | 568, 572 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 276, 584 |
| AflII | CTTAAG | 2 cut(s) | 410, 641 |
| AflIII | ACRYGT | 1 cut(s) | 535 |
| AgsI | TTSAA | 1 cut(s) | 437 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 30, 62 |
| AluBI | AGCT | 5 cut(s) | 105, 335, 415, 472, 626 |
| AluI | AGCT | 5 cut(s) | 105, 335, 415, 472, 626 |
| Alw21I | GWGCWC | 2 cut(s) | 107, 238 |
| Alw26I | GTCTC | 3 cut(s) | 212, 463, 671 |
| AoxI | GGCC | 1 cut(s) | 586 |
| ApeKI | GCWGC | 1 cut(s) | 137 |
| ApoI | RAATTY | 2 cut(s) | 265, 646 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 362 |
| AspLEI | GCGC | 1 cut(s) | 444 |
| AspS9I | GGNCC | 1 cut(s) | 587 |
| BanII | GRGCYC | 1 cut(s) | 107 |
| BbsI | GAAGAC | 1 cut(s) | 501 |
| Bbv12I | GWGCWC | 2 cut(s) | 107, 238 |
| BbvI | GCAGC | 1 cut(s) | 149 |
| BccI | CCATC | 2 cut(s) | 29, 586 |
| BclI | TGATCA | 1 cut(s) | 427 |
| BcoDI | GTCTC | 3 cut(s) | 212, 463, 671 |
| BfaI | CTAG | 1 cut(s) | 18 |
| BfrI | CTTAAG | 2 cut(s) | 410, 641 |
| BisI | GCNGC | 1 cut(s) | 138 |
| BlsI | GCNGC | 1 cut(s) | 139 |
| BmgT120I | GGNCC | 1 cut(s) | 587 |
| BpiI | GAAGAC | 1 cut(s) | 501 |
| BpmI | CTGGAG | 1 cut(s) | 222 |
| BsaAI | YACGTR | 1 cut(s) | 570 |
| BsaHI | GRCGYC | 1 cut(s) | 316 |
| BsaI | GGTCTC | 2 cut(s) | 212, 671 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 276, 584 |
| Bse3DI | GCAATG | 1 cut(s) | 551 |
| BseGI | GGATG | 1 cut(s) | 40 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 276, 584 |
| BseMI | GCAATG | 1 cut(s) | 551 |
| BseMII | CTCAG | 1 cut(s) | 474 |
| BseRI | GAGGAG | 1 cut(s) | 624 |
| BseXI | GCAGC | 1 cut(s) | 149 |
| Bsh1236I | CGCG | 1 cut(s) | 444 |
| BshFI | GGCC | 1 cut(s) | 588 |
| BsiHKAI | GWGCWC | 2 cut(s) | 107, 238 |
| BslFI | GGGAC | 1 cut(s) | 620 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 276, 584 |
| BsmAI | GTCTC | 3 cut(s) | 212, 463, 671 |
| BsmFI | GGGAC | 1 cut(s) | 620 |
| BsnI | GGCC | 1 cut(s) | 588 |
| Bso31I | GGTCTC | 2 cut(s) | 212, 671 |
| Bsp1286I | GDGCHC | 2 cut(s) | 107, 238 |
| Bsp143I | GATC | 3 cut(s) | 247, 304, 427 |
| BspACI | CCGC | 1 cut(s) | 444 |
| BspANI | GGCC | 1 cut(s) | 588 |
| BspCNI | CTCAG | 1 cut(s) | 473 |
| BspFNI | CGCG | 1 cut(s) | 444 |
| BspHI | TCATGA | 1 cut(s) | 615 |
| BspTI | CTTAAG | 2 cut(s) | 410, 641 |
| BspTNI | GGTCTC | 2 cut(s) | 212, 671 |
| BsrDI | GCAATG | 1 cut(s) | 551 |
| BssMI | GATC | 3 cut(s) | 247, 304, 427 |
| BssNI | GRCGYC | 1 cut(s) | 316 |
| Bst4CI | ACNGT | 1 cut(s) | 424 |
| Bst6I | CTCTTC | 3 cut(s) | 82, 597, 674 |
| BstACI | GRCGYC | 1 cut(s) | 316 |
| BstAFI | CTTAAG | 2 cut(s) | 410, 641 |
| BstBAI | YACGTR | 1 cut(s) | 570 |
| BstC8I | GCNNGC | 5 cut(s) | 329, 333, 390, 552, 657 |
| BstDEI | CTNAG | 1 cut(s) | 460 |
| BstF5I | GGATG | 1 cut(s) | 40 |
| BstFNI | CGCG | 1 cut(s) | 444 |
| BstHHI | GCGC | 1 cut(s) | 444 |
| BstKTI | GATC | 3 cut(s) | 250, 307, 430 |
| BstMAI | GTCTC | 3 cut(s) | 212, 463, 671 |
| BstMBI | GATC | 3 cut(s) | 247, 304, 427 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 341, 394, 680 |
| BstNSI | RCATGY | 2 cut(s) | 491, 539 |
| BstSNI | TACGTA | 1 cut(s) | 570 |
| BstUI | CGCG | 1 cut(s) | 444 |
| BstV1I | GCAGC | 1 cut(s) | 149 |
| BstV2I | GAAGAC | 1 cut(s) | 501 |
| BsuRI | GGCC | 1 cut(s) | 588 |
| BtsCI | GGATG | 1 cut(s) | 40 |
| BtsIMutI | CAGTG | 1 cut(s) | 420 |
| Cac8I | GCNNGC | 5 cut(s) | 329, 333, 390, 552, 657 |
| CciI | TCATGA | 1 cut(s) | 615 |
| CfoI | GCGC | 1 cut(s) | 444 |
| Cfr13I | GGNCC | 1 cut(s) | 587 |
| Csp6I | GTAC | 2 cut(s) | 567, 571 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 521, 556 |
| CviAII | CATG | 4 cut(s) | 488, 536, 584, 616 |
| CviQI | GTAC | 2 cut(s) | 567, 571 |
| DdeI | CTNAG | 1 cut(s) | 460 |
| DpnI | GATC | 3 cut(s) | 249, 306, 429 |
| DpnII | GATC | 3 cut(s) | 247, 304, 427 |
| DraI | TTTAAA | 1 cut(s) | 123 |
| Eam1104I | CTCTTC | 3 cut(s) | 82, 597, 674 |
| EarI | CTCTTC | 3 cut(s) | 82, 597, 674 |
| Ecl136II | GAGCTC | 1 cut(s) | 105 |
| Eco105I | TACGTA | 1 cut(s) | 570 |
| Eco24I | GRGCYC | 1 cut(s) | 107 |
| Eco31I | GGTCTC | 2 cut(s) | 212, 671 |
| Eco53kI | GAGCTC | 1 cut(s) | 105 |
| Eco57I | CTGAAG | 1 cut(s) | 258 |
| EcoICRI | GAGCTC | 1 cut(s) | 105 |
| EcoRI | GAATTC | 1 cut(s) | 265 |
| EcoT38I | GRGCYC | 1 cut(s) | 107 |
| FaeI | CATG | 4 cut(s) | 491, 539, 587, 619 |
| FaqI | GGGAC | 1 cut(s) | 620 |
| FatI | CATG | 4 cut(s) | 487, 535, 583, 615 |
| FbaI | TGATCA | 1 cut(s) | 427 |
| Fnu4HI | GCNGC | 1 cut(s) | 138 |
| FokI | GGATG | 1 cut(s) | 47 |
| FriOI | GRGCYC | 1 cut(s) | 107 |
| Fsp4HI | GCNGC | 1 cut(s) | 138 |
| FspBI | CTAG | 1 cut(s) | 18 |
| GlaI | GCGC | 1 cut(s) | 443 |
| GluI | GCNGC | 1 cut(s) | 138 |
| GsuI | CTGGAG | 1 cut(s) | 222 |
| HaeIII | GGCC | 1 cut(s) | 588 |
| HhaI | GCGC | 1 cut(s) | 444 |
| Hin1I | GRCGYC | 1 cut(s) | 316 |
| Hin1II | CATG | 4 cut(s) | 491, 539, 587, 619 |
| Hin6I | GCGC | 1 cut(s) | 442 |
| HinP1I | GCGC | 1 cut(s) | 442 |
| HincII | GTYRAC | 1 cut(s) | 517 |
| HindII | GTYRAC | 1 cut(s) | 517 |
| HindIII | AAGCTT | 1 cut(s) | 624 |
| HinfI | GANTC | 3 cut(s) | 74, 151, 608 |
| HpaI | GTTAAC | 1 cut(s) | 517 |
| Hpy166II | GTNNAC | 1 cut(s) | 517 |
| Hpy188I | TCNGA | 2 cut(s) | 61, 295 |
| Hpy188III | TCNNGA | 5 cut(s) | 194, 239, 355, 596, 616 |
| Hpy8I | GTNNAC | 1 cut(s) | 517 |
| Hpy99I | CGWCG | 2 cut(s) | 318, 321 |
| HpyAV | CCTTC | 1 cut(s) | 151 |
| HpyCH4III | ACNGT | 1 cut(s) | 424 |
| HpyCH4IV | ACGT | 2 cut(s) | 316, 569 |
| HpyCH4V | TGCA | 4 cut(s) | 137, 203, 331, 659 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 341, 394, 680 |
| HpyF3I | CTNAG | 1 cut(s) | 460 |
| HpySE526I | ACGT | 2 cut(s) | 316, 569 |
| Hsp92I | GRCGYC | 1 cut(s) | 316 |
| Hsp92II | CATG | 4 cut(s) | 491, 539, 587, 619 |
| HspAI | GCGC | 1 cut(s) | 442 |
| Ksp22I | TGATCA | 1 cut(s) | 427 |
| KspAI | GTTAAC | 1 cut(s) | 517 |
| Kzo9I | GATC | 3 cut(s) | 247, 304, 427 |
| LmnI | GCTCC | 2 cut(s) | 241, 420 |
| LpnPI | CCDG | 6 cut(s) | 40, 207, 252, 261, 340, 589 |
| Lsp1109I | GCAGC | 1 cut(s) | 149 |
| MaeI | CTAG | 1 cut(s) | 18 |
| MaeII | ACGT | 2 cut(s) | 316, 569 |
| MaeIII | GTNAC | 2 cut(s) | 557, 698 |
| MalI | GATC | 3 cut(s) | 249, 306, 429 |
| MboI | GATC | 3 cut(s) | 247, 304, 427 |
| MboII | GAAGA | 5 cut(s) | 69, 242, 506, 584, 661 |
| MhlI | GDGCHC | 2 cut(s) | 107, 238 |
| MluCI | AATT | 5 cut(s) | 27, 213, 265, 646, 684 |
| MlyI | GAGTC | 2 cut(s) | 68, 602 |
| MnlI | CCTC | 7 cut(s) | 190, 236, 289, 384, 513, 600, 645 |
| MroXI | GAANNNNTTC | 1 cut(s) | 362 |
| MseI | TTAA | 6 cut(s) | 26, 95, 122, 411, 516, 642 |
| MspCI | CTTAAG | 2 cut(s) | 410, 641 |
| MvnI | CGCG | 1 cut(s) | 444 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 341, 394, 680 |
| NdeII | GATC | 3 cut(s) | 247, 304, 427 |
| NlaIII | CATG | 4 cut(s) | 491, 539, 587, 619 |
| NspI | RCATGY | 2 cut(s) | 491, 539 |
| PagI | TCATGA | 1 cut(s) | 615 |
| PciI | ACATGT | 1 cut(s) | 535 |
| PdmI | GAANNNNTTC | 1 cut(s) | 362 |
| PfeI | GAWTC | 1 cut(s) | 151 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 584 |
| PkrI | GCNGC | 1 cut(s) | 139 |
| PleI | GAGTC | 2 cut(s) | 68, 602 |
| PpsI | GAGTC | 2 cut(s) | 68, 602 |
| Ppu21I | YACGTR | 1 cut(s) | 570 |
| PscI | ACATGT | 1 cut(s) | 535 |
| Psp124BI | GAGCTC | 1 cut(s) | 107 |
| PspPI | GGNCC | 1 cut(s) | 587 |
| RsaI | GTAC | 2 cut(s) | 568, 572 |
| RsaNI | GTAC | 2 cut(s) | 567, 571 |
| SacI | GAGCTC | 1 cut(s) | 107 |
| SaqAI | TTAA | 6 cut(s) | 26, 95, 122, 411, 516, 642 |
| SatI | GCNGC | 1 cut(s) | 138 |
| Sau3AI | GATC | 3 cut(s) | 247, 304, 427 |
| Sau96I | GGNCC | 1 cut(s) | 587 |
| SchI | GAGTC | 2 cut(s) | 68, 602 |
| SduI | GDGCHC | 2 cut(s) | 107, 238 |
| SmlI | CTYRAG | 2 cut(s) | 410, 641 |
| SmoI | CTYRAG | 2 cut(s) | 410, 641 |
| SnaBI | TACGTA | 1 cut(s) | 570 |
| Sse9I | AATT | 5 cut(s) | 27, 213, 265, 646, 684 |
| SsiI | CCGC | 1 cut(s) | 444 |
| SspMI | CTAG | 1 cut(s) | 18 |
| SstI | GAGCTC | 1 cut(s) | 107 |
| TaaI | ACNGT | 1 cut(s) | 424 |
| TaiI | ACGT | 2 cut(s) | 319, 572 |
| TaqI | TCGA | 2 cut(s) | 149, 313 |
| TasI | AATT | 5 cut(s) | 27, 213, 265, 646, 684 |
| TfiI | GAWTC | 1 cut(s) | 151 |
| Tru1I | TTAA | 6 cut(s) | 26, 95, 122, 411, 516, 642 |
| Tru9I | TTAA | 6 cut(s) | 26, 95, 122, 411, 516, 642 |
| TscAI | CASTG | 1 cut(s) | 427 |
| TseI | GCWGC | 1 cut(s) | 137 |
| TspDTI | ATGAA | 4 cut(s) | 133, 355, 395, 604 |
| TspRI | CASTG | 1 cut(s) | 427 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 584 |
| Vha464I | CTTAAG | 2 cut(s) | 410, 641 |
| XapI | RAATTY | 2 cut(s) | 265, 646 |
| XceI | RCATGY | 2 cut(s) | 491, 539 |
| XmnI | GAANNNNTTC | 1 cut(s) | 362 |
| XspI | CTAG | 1 cut(s) | 18 |
| ZraI | GACGTC | 1 cut(s) | 317 |