ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Apolipoprotein | PF01442 | 278 - 383 | 3.3e-06 | Apolipoprotein A1/A4/E domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 894, 929 |
| Acc36I | ACCTGC | 4 cut(s) | 325, 367, 718, 1054 |
| AccII | CGCG | 1 cut(s) | 131 |
| AciI | CCGC | 3 cut(s) | 129, 1098, 1199 |
| AclWI | GGATC | 5 cut(s) | 156, 160, 799, 812, 944 |
| AcsI | RAATTY | 2 cut(s) | 179, 525 |
| AcuI | CTGAAG | 2 cut(s) | 57, 155 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 5 cut(s) | 910, 1134, 1264, 1284, 1291 |
| AjiI | CACGTC | 1 cut(s) | 1304 |
| AjnI | CCWGG | 1 cut(s) | 738 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 128, 160, 413, 445 |
| AluBI | AGCT | 6 cut(s) | 16, 359, 452, 758, 890, 917 |
| AluI | AGCT | 6 cut(s) | 16, 359, 452, 758, 890, 917 |
| Alw21I | GWGCWC | 1 cut(s) | 547 |
| AlwI | GGATC | 5 cut(s) | 156, 160, 799, 812, 944 |
| AoxI | GGCC | 7 cut(s) | 39, 115, 426, 735, 1074, 1200, 1311 |
| ApeKI | GCWGC | 1 cut(s) | 713 |
| ApoI | RAATTY | 2 cut(s) | 179, 525 |
| AspLEI | GCGC | 1 cut(s) | 133 |
| AspS9I | GGNCC | 3 cut(s) | 40, 116, 736 |
| AsuC2I | CCSGG | 1 cut(s) | 809 |
| AsuHPI | GGTGA | 2 cut(s) | 374, 736 |
| AsuII | TTCGAA | 1 cut(s) | 529 |
| BamHI | GGATCC | 1 cut(s) | 804 |
| BauI | CACGAG | 1 cut(s) | 354 |
| BbsI | GAAGAC | 1 cut(s) | 506 |
| Bbv12I | GWGCWC | 1 cut(s) | 547 |
| BbvCI | CCTCAGC | 2 cut(s) | 66, 558 |
| BbvI | GCAGC | 1 cut(s) | 700 |
| BccI | CCATC | 1 cut(s) | 1232 |
| BceAI | ACGGC | 1 cut(s) | 130 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 332, 366 |
| BciT130I | CCWGG | 1 cut(s) | 740 |
| BclI | TGATCA | 1 cut(s) | 994 |
| BcnI | CCSGG | 1 cut(s) | 809 |
| BfaI | CTAG | 1 cut(s) | 44 |
| BfmI | CTRYAG | 2 cut(s) | 281, 714 |
| BfuAI | ACCTGC | 4 cut(s) | 325, 367, 718, 1054 |
| BisI | GCNGC | 2 cut(s) | 714, 1200 |
| BlsI | GCNGC | 2 cut(s) | 715, 1201 |
| Bme1390I | CCNGG | 2 cut(s) | 740, 809 |
| BmgBI | CACGTC | 1 cut(s) | 1304 |
| BmgT120I | GGNCC | 3 cut(s) | 40, 116, 736 |
| BmiI | GGNNCC | 1 cut(s) | 806 |
| BmrFI | CCNGG | 2 cut(s) | 740, 809 |
| BpiI | GAAGAC | 1 cut(s) | 506 |
| BpmI | CTGGAG | 2 cut(s) | 287, 761 |
| Bpu10I | CCTNAGC | 2 cut(s) | 66, 558 |
| Bpu14I | TTCGAA | 1 cut(s) | 529 |
| BpuMI | CCSGG | 1 cut(s) | 809 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaJI | CCNNGG | 2 cut(s) | 429, 738 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 901, 931 |
| Bse1I | ACTGG | 2 cut(s) | 99, 695 |
| BseBI | CCWGG | 1 cut(s) | 740 |
| BseDI | CCNNGG | 2 cut(s) | 429, 738 |
| BseGI | GGATG | 4 cut(s) | 226, 271, 328, 1324 |
| BseMII | CTCAG | 5 cut(s) | 57, 169, 444, 528, 549 |
| BseNI | ACTGG | 2 cut(s) | 99, 695 |
| BseRI | GAGGAG | 1 cut(s) | 206 |
| BseXI | GCAGC | 1 cut(s) | 700 |
| Bsh1236I | CGCG | 1 cut(s) | 131 |
| Bsh1285I | CGRYCG | 1 cut(s) | 110 |
| BshFI | GGCC | 7 cut(s) | 41, 117, 428, 737, 1076, 1202, 1313 |
| BsiEI | CGRYCG | 1 cut(s) | 110 |
| BsiHKAI | GWGCWC | 1 cut(s) | 547 |
| BsiSI | CCGG | 1 cut(s) | 809 |
| BsiWI | CGTACG | 1 cut(s) | 1132 |
| BsnI | GGCC | 7 cut(s) | 41, 117, 428, 737, 1076, 1202, 1313 |
| Bsp119I | TTCGAA | 1 cut(s) | 529 |
| Bsp1286I | GDGCHC | 1 cut(s) | 547 |
| Bsp1407I | TGTACA | 1 cut(s) | 1262 |
| Bsp143I | GATC | 9 cut(s) | 107, 138, 148, 165, 474, 492, 804, 949, 994 |
| BspACI | CCGC | 3 cut(s) | 129, 1098, 1199 |
| BspANI | GGCC | 7 cut(s) | 41, 117, 428, 737, 1076, 1202, 1313 |
| BspCNI | CTCAG | 5 cut(s) | 58, 168, 445, 529, 550 |
| BspFNI | CGCG | 1 cut(s) | 131 |
| BspLI | GGNNCC | 1 cut(s) | 806 |
| BspMAI | CTGCAG | 2 cut(s) | 285, 718 |
| BspMI | ACCTGC | 4 cut(s) | 325, 367, 718, 1054 |
| BspPI | GGATC | 5 cut(s) | 156, 160, 799, 812, 944 |
| BspT104I | TTCGAA | 1 cut(s) | 529 |
| BsrGI | TGTACA | 1 cut(s) | 1262 |
| BsrI | ACTGG | 2 cut(s) | 99, 695 |
| BssECI | CCNNGG | 2 cut(s) | 429, 738 |
| BssMI | GATC | 9 cut(s) | 107, 138, 148, 165, 474, 492, 804, 949, 994 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssSI | CACGAG | 1 cut(s) | 354 |
| BssT1I | CCWWGG | 1 cut(s) | 429 |
| Bst2BI | CACGAG | 1 cut(s) | 354 |
| Bst2UI | CCWGG | 1 cut(s) | 740 |
| Bst4CI | ACNGT | 4 cut(s) | 215, 825, 1009, 1132 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAUI | TGTACA | 1 cut(s) | 1262 |
| BstBI | TTCGAA | 1 cut(s) | 529 |
| BstC8I | GCNNGC | 3 cut(s) | 543, 648, 983 |
| BstDEI | CTNAG | 6 cut(s) | 66, 155, 453, 537, 558, 869 |
| BstF5I | GGATG | 4 cut(s) | 226, 271, 328, 1324 |
| BstFNI | CGCG | 1 cut(s) | 131 |
| BstHHI | GCGC | 1 cut(s) | 133 |
| BstKTI | GATC | 9 cut(s) | 110, 141, 151, 168, 477, 495, 807, 952, 997 |
| BstMBI | GATC | 9 cut(s) | 107, 138, 148, 165, 474, 492, 804, 949, 994 |
| BstMCI | CGRYCG | 1 cut(s) | 110 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 434, 449, 1010, 1205, 1214 |
| BstNI | CCWGG | 1 cut(s) | 740 |
| BstSCI | CCNGG | 2 cut(s) | 738, 807 |
| BstSFI | CTRYAG | 2 cut(s) | 281, 714 |
| BstUI | CGCG | 1 cut(s) | 131 |
| BstV1I | GCAGC | 1 cut(s) | 700 |
| BstV2I | GAAGAC | 1 cut(s) | 506 |
| BstX2I | RGATCY | 2 cut(s) | 165, 804 |
| BstYI | RGATCY | 2 cut(s) | 165, 804 |
| BsuRI | GGCC | 7 cut(s) | 41, 117, 428, 737, 1076, 1202, 1313 |
| BtrI | CACGTC | 1 cut(s) | 1304 |
| BtsCI | GGATG | 4 cut(s) | 226, 271, 328, 1324 |
| BtsIMutI | CAGTG | 4 cut(s) | 92, 830, 1005, 1142 |
| BveI | ACCTGC | 4 cut(s) | 325, 367, 718, 1054 |
| Cac8I | GCNNGC | 3 cut(s) | 543, 648, 983 |
| CfoI | GCGC | 1 cut(s) | 133 |
| Cfr13I | GGNCC | 3 cut(s) | 40, 116, 736 |
| Csp6I | GTAC | 5 cut(s) | 909, 1133, 1263, 1283, 1290 |
| CviQI | GTAC | 5 cut(s) | 909, 1133, 1263, 1283, 1290 |
| DdeI | CTNAG | 6 cut(s) | 66, 155, 453, 537, 558, 869 |
| DpnI | GATC | 9 cut(s) | 109, 140, 150, 167, 476, 494, 806, 951, 996 |
| DpnII | GATC | 9 cut(s) | 107, 138, 148, 165, 474, 492, 804, 949, 994 |
| Eco130I | CCWWGG | 1 cut(s) | 429 |
| Eco147I | AGGCCT | 2 cut(s) | 428, 1076 |
| Eco57I | CTGAAG | 2 cut(s) | 57, 155 |
| EcoO109I | RGGNCCY | 1 cut(s) | 736 |
| EcoRII | CCWGG | 1 cut(s) | 738 |
| EcoT14I | CCWWGG | 1 cut(s) | 429 |
| ErhI | CCWWGG | 1 cut(s) | 429 |
| FauNDI | CATATG | 1 cut(s) | 988 |
| FbaI | TGATCA | 1 cut(s) | 994 |
| Fnu4HI | GCNGC | 2 cut(s) | 714, 1200 |
| FokI | GGATG | 4 cut(s) | 233, 278, 335, 1311 |
| Fsp4HI | GCNGC | 2 cut(s) | 714, 1200 |
| FspBI | CTAG | 1 cut(s) | 44 |
| GlaI | GCGC | 1 cut(s) | 132 |
| GluI | GCNGC | 2 cut(s) | 714, 1200 |
| GsuI | CTGGAG | 2 cut(s) | 287, 761 |
| HaeIII | GGCC | 7 cut(s) | 41, 117, 428, 737, 1076, 1202, 1313 |
| HapII | CCGG | 1 cut(s) | 809 |
| HhaI | GCGC | 1 cut(s) | 133 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin6I | GCGC | 1 cut(s) | 131 |
| HinP1I | GCGC | 1 cut(s) | 131 |
| HincII | GTYRAC | 3 cut(s) | 382, 612, 1272 |
| HindII | GTYRAC | 3 cut(s) | 382, 612, 1272 |
| HindIII | AAGCTT | 1 cut(s) | 888 |
| HinfI | GANTC | 5 cut(s) | 22, 122, 296, 727, 842 |
| HpaI | GTTAAC | 1 cut(s) | 612 |
| HpaII | CCGG | 1 cut(s) | 809 |
| HphI | GGTGA | 2 cut(s) | 374, 736 |
| Hpy166II | GTNNAC | 4 cut(s) | 259, 382, 612, 1272 |
| Hpy188I | TCNGA | 5 cut(s) | 107, 112, 265, 732, 1241 |
| Hpy188III | TCNNGA | 6 cut(s) | 19, 304, 478, 496, 962, 1328 |
| Hpy8I | GTNNAC | 4 cut(s) | 259, 382, 612, 1272 |
| Hpy99I | CGWCG | 1 cut(s) | 1308 |
| HpyAV | CCTTC | 1 cut(s) | 727 |
| HpyCH4III | ACNGT | 4 cut(s) | 215, 825, 1009, 1132 |
| HpyCH4IV | ACGT | 2 cut(s) | 468, 1303 |
| HpyCH4V | TGCA | 6 cut(s) | 283, 353, 629, 716, 862, 1013 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 434, 449, 1010, 1205, 1214 |
| HpyF3I | CTNAG | 6 cut(s) | 66, 155, 453, 537, 558, 869 |
| HpySE526I | ACGT | 2 cut(s) | 468, 1303 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| HspAI | GCGC | 1 cut(s) | 131 |
| Ksp22I | TGATCA | 1 cut(s) | 994 |
| KspAI | GTTAAC | 1 cut(s) | 612 |
| Kzo9I | GATC | 9 cut(s) | 107, 138, 148, 165, 474, 492, 804, 949, 994 |
| LmnI | GCTCC | 1 cut(s) | 922 |
| Lsp1109I | GCAGC | 1 cut(s) | 700 |
| MaeI | CTAG | 1 cut(s) | 44 |
| MaeII | ACGT | 2 cut(s) | 468, 1303 |
| MalI | GATC | 9 cut(s) | 109, 140, 150, 167, 476, 494, 806, 951, 996 |
| MboI | GATC | 9 cut(s) | 107, 138, 148, 165, 474, 492, 804, 949, 994 |
| MboII | GAAGA | 8 cut(s) | 95, 148, 175, 250, 469, 472, 511, 575 |
| MflI | RGATCY | 2 cut(s) | 165, 804 |
| MhlI | GDGCHC | 1 cut(s) | 547 |
| MluCI | AATT | 7 cut(s) | 57, 179, 365, 398, 525, 1230, 1254 |
| MmeI | TCCRAC | 2 cut(s) | 126, 1167 |
| MseI | TTAA | 6 cut(s) | 201, 390, 549, 611, 792, 1229 |
| MslI | CAYNNNNRTG | 1 cut(s) | 254 |
| MspI | CCGG | 1 cut(s) | 809 |
| MspR9I | CCNGG | 2 cut(s) | 740, 809 |
| MvaI | CCWGG | 1 cut(s) | 740 |
| MvnI | CGCG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 434, 449, 1010, 1205, 1214 |
| NciI | CCSGG | 1 cut(s) | 809 |
| NdeI | CATATG | 1 cut(s) | 988 |
| NdeII | GATC | 9 cut(s) | 107, 138, 148, 165, 474, 492, 804, 949, 994 |
| NlaIV | GGNNCC | 1 cut(s) | 806 |
| NspV | TTCGAA | 1 cut(s) | 529 |
| PceI | AGGCCT | 2 cut(s) | 428, 1076 |
| PfeI | GAWTC | 5 cut(s) | 22, 122, 296, 727, 842 |
| Pfl23II | CGTACG | 1 cut(s) | 1132 |
| PkrI | GCNGC | 2 cut(s) | 715, 1201 |
| Ple19I | CGATCG | 1 cut(s) | 110 |
| PsiI | TTATAA | 2 cut(s) | 894, 929 |
| Psp6I | CCWGG | 1 cut(s) | 738 |
| PspGI | CCWGG | 1 cut(s) | 738 |
| PspLI | CGTACG | 1 cut(s) | 1132 |
| PspN4I | GGNNCC | 1 cut(s) | 806 |
| PspPI | GGNCC | 3 cut(s) | 40, 116, 736 |
| PstI | CTGCAG | 2 cut(s) | 285, 718 |
| PsuI | RGATCY | 2 cut(s) | 165, 804 |
| PvuI | CGATCG | 1 cut(s) | 110 |
| RsaI | GTAC | 5 cut(s) | 910, 1134, 1264, 1284, 1291 |
| RsaNI | GTAC | 5 cut(s) | 909, 1133, 1263, 1283, 1290 |
| RseI | CAYNNNNRTG | 1 cut(s) | 254 |
| SaqAI | TTAA | 6 cut(s) | 201, 390, 549, 611, 792, 1229 |
| SatI | GCNGC | 2 cut(s) | 714, 1200 |
| Sau3AI | GATC | 9 cut(s) | 107, 138, 148, 165, 474, 492, 804, 949, 994 |
| Sau96I | GGNCC | 3 cut(s) | 40, 116, 736 |
| ScrFI | CCNGG | 2 cut(s) | 740, 809 |
| SduI | GDGCHC | 1 cut(s) | 547 |
| SfcI | CTRYAG | 2 cut(s) | 281, 714 |
| SfuI | TTCGAA | 1 cut(s) | 529 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 254 |
| Sse9I | AATT | 7 cut(s) | 57, 179, 365, 398, 525, 1230, 1254 |
| SseBI | AGGCCT | 2 cut(s) | 428, 1076 |
| SsiI | CCGC | 3 cut(s) | 129, 1098, 1199 |
| SspMI | CTAG | 1 cut(s) | 44 |
| StuI | AGGCCT | 2 cut(s) | 428, 1076 |
| StyD4I | CCNGG | 2 cut(s) | 738, 807 |
| StyI | CCWWGG | 1 cut(s) | 429 |
| TaaI | ACNGT | 4 cut(s) | 215, 825, 1009, 1132 |
| TaiI | ACGT | 2 cut(s) | 471, 1306 |
| TaqI | TCGA | 5 cut(s) | 141, 161, 177, 495, 529 |
| TaqII | GACCGA | 1 cut(s) | 19 |
| TasI | AATT | 7 cut(s) | 57, 179, 365, 398, 525, 1230, 1254 |
| TatI | WGTACW | 2 cut(s) | 908, 1262 |
| TauI | GCSGC | 1 cut(s) | 1202 |
| TfiI | GAWTC | 5 cut(s) | 22, 122, 296, 727, 842 |
| Tru1I | TTAA | 6 cut(s) | 201, 390, 549, 611, 792, 1229 |
| Tru9I | TTAA | 6 cut(s) | 201, 390, 549, 611, 792, 1229 |
| TscAI | CASTG | 4 cut(s) | 99, 830, 1012, 1149 |
| TseI | GCWGC | 1 cut(s) | 713 |
| TspDTI | ATGAA | 4 cut(s) | 525, 611, 644, 1170 |
| TspGWI | ACGGA | 1 cut(s) | 1300 |
| TspRI | CASTG | 4 cut(s) | 99, 830, 1012, 1149 |
| XapI | RAATTY | 2 cut(s) | 179, 525 |
| XspI | CTAG | 1 cut(s) | 44 |