Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 20 - 78 | 8e-06 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 33 |
| Acc36I | ACCTGC | 1 cut(s) | 83 |
| AccI | GTMKAC | 1 cut(s) | 80 |
| AclI | AACGTT | 1 cut(s) | 330 |
| AclWI | GGATC | 1 cut(s) | 56 |
| AcsI | RAATTY | 1 cut(s) | 157 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 222 |
| AgsI | TTSAA | 3 cut(s) | 76, 113, 394 |
| AjnI | CCWGG | 1 cut(s) | 215 |
| AluBI | AGCT | 2 cut(s) | 179, 287 |
| AluI | AGCT | 2 cut(s) | 179, 287 |
| AlwI | GGATC | 1 cut(s) | 56 |
| AoxI | GGCC | 1 cut(s) | 85 |
| ApeKI | GCWGC | 2 cut(s) | 176, 344 |
| ApoI | RAATTY | 1 cut(s) | 157 |
| AspS9I | GGNCC | 1 cut(s) | 324 |
| AsuII | TTCGAA | 1 cut(s) | 208 |
| AvaII | GGWCC | 1 cut(s) | 324 |
| BbvCI | CCTCAGC | 1 cut(s) | 180 |
| BbvI | GCAGC | 2 cut(s) | 188, 356 |
| BccI | CCATC | 1 cut(s) | 59 |
| BciT130I | CCWGG | 1 cut(s) | 217 |
| BfmI | CTRYAG | 1 cut(s) | 81 |
| BfuAI | ACCTGC | 1 cut(s) | 83 |
| BisI | GCNGC | 2 cut(s) | 177, 345 |
| BlsI | GCNGC | 2 cut(s) | 178, 346 |
| Bme1390I | CCNGG | 1 cut(s) | 217 |
| Bme18I | GGWCC | 1 cut(s) | 324 |
| BmgT120I | GGNCC | 1 cut(s) | 324 |
| BmrFI | CCNGG | 1 cut(s) | 217 |
| BmsI | GCATC | 3 cut(s) | 32, 268, 298 |
| Bpu10I | CCTNAGC | 2 cut(s) | 180, 283 |
| Bpu14I | TTCGAA | 1 cut(s) | 208 |
| BpuEI | CTTGAG | 1 cut(s) | 105 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 222 |
| Bse1I | ACTGG | 2 cut(s) | 323, 381 |
| BseBI | CCWGG | 1 cut(s) | 217 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 222 |
| BseMII | CTCAG | 1 cut(s) | 171 |
| BseNI | ACTGG | 2 cut(s) | 323, 381 |
| BseXI | GCAGC | 2 cut(s) | 188, 356 |
| BsgI | GTGCAG | 1 cut(s) | 318 |
| BshFI | GGCC | 1 cut(s) | 87 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 222 |
| BsnI | GGCC | 1 cut(s) | 87 |
| Bsp119I | TTCGAA | 1 cut(s) | 208 |
| Bsp143I | GATC | 3 cut(s) | 48, 301, 364 |
| BspANI | GGCC | 1 cut(s) | 87 |
| BspCNI | CTCAG | 1 cut(s) | 172 |
| BspHI | TCATGA | 2 cut(s) | 304, 361 |
| BspMI | ACCTGC | 1 cut(s) | 83 |
| BspPI | GGATC | 1 cut(s) | 56 |
| BspT104I | TTCGAA | 1 cut(s) | 208 |
| BsrI | ACTGG | 2 cut(s) | 323, 381 |
| BssMI | GATC | 3 cut(s) | 48, 301, 364 |
| Bst2UI | CCWGG | 1 cut(s) | 217 |
| Bst4CI | ACNGT | 1 cut(s) | 269 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 350 |
| BstBI | TTCGAA | 1 cut(s) | 208 |
| BstDEI | CTNAG | 2 cut(s) | 180, 283 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 220 |
| BstKTI | GATC | 3 cut(s) | 51, 304, 367 |
| BstMBI | GATC | 3 cut(s) | 48, 301, 364 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 137, 350 |
| BstNI | CCWGG | 1 cut(s) | 217 |
| BstNSI | RCATGY | 1 cut(s) | 236 |
| BstSCI | CCNGG | 1 cut(s) | 215 |
| BstSFI | CTRYAG | 1 cut(s) | 81 |
| BstV1I | GCAGC | 2 cut(s) | 188, 356 |
| BsuRI | GGCC | 1 cut(s) | 87 |
| BveI | ACCTGC | 1 cut(s) | 83 |
| CciI | TCATGA | 2 cut(s) | 304, 361 |
| Cfr13I | GGNCC | 1 cut(s) | 324 |
| CseI | GACGC | 1 cut(s) | 135 |
| CviAII | CATG | 4 cut(s) | 89, 233, 305, 362 |
| CviJI | RGCY | 4 cut(s) | 87, 179, 275, 287 |
| CviKI_1 | RGCY | 4 cut(s) | 87, 179, 275, 287 |
| DdeI | CTNAG | 2 cut(s) | 180, 283 |
| DpnI | GATC | 3 cut(s) | 50, 303, 366 |
| DpnII | GATC | 3 cut(s) | 48, 301, 364 |
| Eco47I | GGWCC | 1 cut(s) | 324 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 220 |
| EcoRII | CCWGG | 1 cut(s) | 215 |
| EcoT22I | ATGCAT | 2 cut(s) | 234, 313 |
| FaeI | CATG | 4 cut(s) | 92, 236, 308, 365 |
| FatI | CATG | 4 cut(s) | 88, 232, 304, 361 |
| FauNDI | CATATG | 2 cut(s) | 228, 340 |
| FblI | GTMKAC | 1 cut(s) | 80 |
| Fnu4HI | GCNGC | 2 cut(s) | 177, 345 |
| Fsp4HI | GCNGC | 2 cut(s) | 177, 345 |
| GluI | GCNGC | 2 cut(s) | 177, 345 |
| HaeIII | GGCC | 1 cut(s) | 87 |
| HgaI | GACGC | 1 cut(s) | 135 |
| Hin1II | CATG | 4 cut(s) | 92, 236, 308, 365 |
| HinfI | GANTC | 1 cut(s) | 116 |
| Hpy166II | GTNNAC | 2 cut(s) | 81, 153 |
| Hpy188III | TCNNGA | 4 cut(s) | 113, 257, 305, 362 |
| Hpy8I | GTNNAC | 2 cut(s) | 81, 153 |
| Hpy99I | CGWCG | 1 cut(s) | 151 |
| HpyCH4III | ACNGT | 1 cut(s) | 269 |
| HpyCH4IV | ACGT | 1 cut(s) | 330 |
| HpyCH4V | TGCA | 6 cut(s) | 92, 176, 232, 299, 311, 344 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 137, 350 |
| HpyF3I | CTNAG | 2 cut(s) | 180, 283 |
| HpySE526I | ACGT | 1 cut(s) | 330 |
| Hsp92II | CATG | 4 cut(s) | 92, 236, 308, 365 |
| Kzo9I | GATC | 3 cut(s) | 48, 301, 364 |
| LpnPI | CCDG | 6 cut(s) | 69, 78, 202, 229, 304, 394 |
| Lsp1109I | GCAGC | 2 cut(s) | 188, 356 |
| LweI | GCATC | 3 cut(s) | 32, 268, 298 |
| MaeII | ACGT | 1 cut(s) | 330 |
| MalI | GATC | 3 cut(s) | 50, 303, 366 |
| MboI | GATC | 3 cut(s) | 48, 301, 364 |
| MboII | GAAGA | 1 cut(s) | 327 |
| MluCI | AATT | 4 cut(s) | 15, 157, 195, 210 |
| MmeI | TCCRAC | 1 cut(s) | 351 |
| MnlI | CCTC | 3 cut(s) | 175, 193, 253 |
| Mph1103I | ATGCAT | 2 cut(s) | 234, 313 |
| MseI | TTAA | 1 cut(s) | 18 |
| MslI | CAYNNNNRTG | 1 cut(s) | 231 |
| MspA1I | CMGCKG | 1 cut(s) | 179 |
| MspR9I | CCNGG | 1 cut(s) | 217 |
| MvaI | CCWGG | 1 cut(s) | 217 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 137, 350 |
| NdeI | CATATG | 2 cut(s) | 228, 340 |
| NdeII | GATC | 3 cut(s) | 48, 301, 364 |
| NlaIII | CATG | 4 cut(s) | 92, 236, 308, 365 |
| NsiI | ATGCAT | 2 cut(s) | 234, 313 |
| NspI | RCATGY | 1 cut(s) | 236 |
| NspV | TTCGAA | 1 cut(s) | 208 |
| PagI | TCATGA | 2 cut(s) | 304, 361 |
| PfeI | GAWTC | 1 cut(s) | 116 |
| PkrI | GCNGC | 2 cut(s) | 178, 346 |
| PsiI | TTATAA | 1 cut(s) | 33 |
| Psp1406I | AACGTT | 1 cut(s) | 330 |
| Psp6I | CCWGG | 1 cut(s) | 215 |
| PspGI | CCWGG | 1 cut(s) | 215 |
| PspPI | GGNCC | 1 cut(s) | 324 |
| PvuII | CAGCTG | 1 cut(s) | 179 |
| RseI | CAYNNNNRTG | 1 cut(s) | 231 |
| SaqAI | TTAA | 1 cut(s) | 18 |
| SatI | GCNGC | 2 cut(s) | 177, 345 |
| Sau3AI | GATC | 3 cut(s) | 48, 301, 364 |
| Sau96I | GGNCC | 1 cut(s) | 324 |
| ScrFI | CCNGG | 1 cut(s) | 217 |
| SetI | ASST | 9 cut(s) | 42, 57, 97, 127, 181, 186, 204, 289, 333 |
| SfaNI | GCATC | 3 cut(s) | 32, 268, 298 |
| SfcI | CTRYAG | 1 cut(s) | 81 |
| SfuI | TTCGAA | 1 cut(s) | 208 |
| SinI | GGWCC | 1 cut(s) | 324 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 231 |
| SmlI | CTYRAG | 1 cut(s) | 120 |
| SmoI | CTYRAG | 1 cut(s) | 120 |
| Sse9I | AATT | 4 cut(s) | 15, 157, 195, 210 |
| StyD4I | CCNGG | 1 cut(s) | 215 |
| TaaI | ACNGT | 1 cut(s) | 269 |
| TaiI | ACGT | 1 cut(s) | 333 |
| TaqI | TCGA | 2 cut(s) | 170, 208 |
| TasI | AATT | 4 cut(s) | 15, 157, 195, 210 |
| TfiI | GAWTC | 1 cut(s) | 116 |
| Tru1I | TTAA | 1 cut(s) | 18 |
| Tru9I | TTAA | 1 cut(s) | 18 |
| TseI | GCWGC | 2 cut(s) | 176, 344 |
| TspDTI | ATGAA | 3 cut(s) | 17, 327, 350 |
| VpaK11BI | GGWCC | 1 cut(s) | 324 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 220 |
| XapI | RAATTY | 1 cut(s) | 157 |
| XceI | RCATGY | 1 cut(s) | 236 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 95 |
| XmiI | GTMKAC | 1 cut(s) | 80 |
| Zsp2I | ATGCAT | 2 cut(s) | 234, 313 |