ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 1 - 76 | 3.3e-10 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 109 |
| AccII | CGCG | 1 cut(s) | 192 |
| AciI | CCGC | 1 cut(s) | 5 |
| AcsI | RAATTY | 1 cut(s) | 166 |
| AfaI | GTAC | 1 cut(s) | 232 |
| AflIII | ACRYGT | 1 cut(s) | 49 |
| AgsI | TTSAA | 3 cut(s) | 23, 131, 285 |
| AluBI | AGCT | 2 cut(s) | 29, 121 |
| AluI | AGCT | 2 cut(s) | 29, 121 |
| Alw26I | GTCTC | 1 cut(s) | 102 |
| ApeKI | GCWGC | 1 cut(s) | 118 |
| ApoI | RAATTY | 1 cut(s) | 166 |
| AsuHPI | GGTGA | 1 cut(s) | 46 |
| BanI | GGYRCC | 1 cut(s) | 109 |
| BbsI | GAAGAC | 3 cut(s) | 228, 302, 303 |
| BbvI | GCAGC | 1 cut(s) | 130 |
| BciVI | GTATCC | 1 cut(s) | 253 |
| BcoDI | GTCTC | 1 cut(s) | 102 |
| BfaI | CTAG | 2 cut(s) | 26, 270 |
| BfuI | GTATCC | 1 cut(s) | 253 |
| BisI | GCNGC | 1 cut(s) | 119 |
| BlsI | GCNGC | 1 cut(s) | 120 |
| BmiI | GGNNCC | 1 cut(s) | 111 |
| BmsI | GCATC | 1 cut(s) | 202 |
| BpiI | GAAGAC | 3 cut(s) | 228, 302, 303 |
| Bpu10I | CCTNAGC | 1 cut(s) | 217 |
| BsaI | GGTCTC | 1 cut(s) | 102 |
| BsaJI | CCNNGG | 1 cut(s) | 113 |
| Bse3DI | GCAATG | 1 cut(s) | 276 |
| BseDI | CCNNGG | 1 cut(s) | 113 |
| BseMI | GCAATG | 1 cut(s) | 276 |
| BseXI | GCAGC | 1 cut(s) | 130 |
| Bsh1236I | CGCG | 1 cut(s) | 192 |
| BshNI | GGYRCC | 1 cut(s) | 109 |
| BsmAI | GTCTC | 1 cut(s) | 102 |
| Bso31I | GGTCTC | 1 cut(s) | 102 |
| Bsp68I | TCGCGA | 1 cut(s) | 192 |
| BspACI | CCGC | 1 cut(s) | 5 |
| BspFNI | CGCG | 1 cut(s) | 192 |
| BspLI | GGNNCC | 1 cut(s) | 111 |
| BspT107I | GGYRCC | 1 cut(s) | 109 |
| BspTNI | GGTCTC | 1 cut(s) | 102 |
| BsrDI | GCAATG | 1 cut(s) | 276 |
| BssECI | CCNNGG | 1 cut(s) | 113 |
| BssT1I | CCWWGG | 1 cut(s) | 113 |
| Bst4CI | ACNGT | 1 cut(s) | 302 |
| BstDEI | CTNAG | 1 cut(s) | 217 |
| BstFNI | CGCG | 1 cut(s) | 192 |
| BstMAI | GTCTC | 1 cut(s) | 102 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 118 |
| BstNSI | RCATGY | 1 cut(s) | 53 |
| BstUI | CGCG | 1 cut(s) | 192 |
| BstV1I | GCAGC | 1 cut(s) | 130 |
| BstV2I | GAAGAC | 3 cut(s) | 228, 302, 303 |
| BsuI | GTATCC | 1 cut(s) | 253 |
| BtuMI | TCGCGA | 1 cut(s) | 192 |
| Csp6I | GTAC | 1 cut(s) | 231 |
| CviAII | CATG | 2 cut(s) | 50, 203 |
| CviJI | RGCY | 3 cut(s) | 29, 58, 121 |
| CviKI_1 | RGCY | 3 cut(s) | 29, 58, 121 |
| CviQI | GTAC | 1 cut(s) | 231 |
| DdeI | CTNAG | 1 cut(s) | 217 |
| Eco130I | CCWWGG | 1 cut(s) | 113 |
| Eco31I | GGTCTC | 1 cut(s) | 102 |
| EcoT14I | CCWWGG | 1 cut(s) | 113 |
| ErhI | CCWWGG | 1 cut(s) | 113 |
| FaeI | CATG | 2 cut(s) | 53, 206 |
| FaiI | YATR | 6 cut(s) | 51, 55, 183, 185, 204, 228 |
| FatI | CATG | 2 cut(s) | 49, 202 |
| Fnu4HI | GCNGC | 1 cut(s) | 119 |
| Fsp4HI | GCNGC | 1 cut(s) | 119 |
| FspBI | CTAG | 2 cut(s) | 26, 270 |
| GluI | GCNGC | 1 cut(s) | 119 |
| Hin1II | CATG | 2 cut(s) | 53, 206 |
| HinfI | GANTC | 2 cut(s) | 68, 199 |
| HphI | GGTGA | 1 cut(s) | 46 |
| Hpy188I | TCNGA | 1 cut(s) | 315 |
| Hpy188III | TCNNGA | 2 cut(s) | 83, 191 |
| HpyAV | CCTTC | 2 cut(s) | 111, 188 |
| HpyCH4III | ACNGT | 1 cut(s) | 302 |
| HpyCH4IV | ACGT | 1 cut(s) | 233 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 118 |
| HpyF3I | CTNAG | 1 cut(s) | 217 |
| HpySE526I | ACGT | 1 cut(s) | 233 |
| Hsp92II | CATG | 2 cut(s) | 53, 206 |
| LpnPI | CCDG | 1 cut(s) | 44 |
| Lsp1109I | GCAGC | 1 cut(s) | 130 |
| LweI | GCATC | 1 cut(s) | 202 |
| MaeI | CTAG | 2 cut(s) | 26, 270 |
| MaeII | ACGT | 1 cut(s) | 233 |
| MboII | GAAGA | 5 cut(s) | 63, 83, 228, 302, 308 |
| MluCI | AATT | 3 cut(s) | 139, 166, 286 |
| MnlI | CCTC | 1 cut(s) | 30 |
| MvnI | CGCG | 1 cut(s) | 192 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 118 |
| NlaIII | CATG | 2 cut(s) | 53, 206 |
| NlaIV | GGNNCC | 1 cut(s) | 111 |
| NruI | TCGCGA | 1 cut(s) | 192 |
| NspI | RCATGY | 1 cut(s) | 53 |
| PciI | ACATGT | 1 cut(s) | 49 |
| PfeI | GAWTC | 2 cut(s) | 68, 199 |
| PkrI | GCNGC | 1 cut(s) | 120 |
| PscI | ACATGT | 1 cut(s) | 49 |
| PspN4I | GGNNCC | 1 cut(s) | 111 |
| RruI | TCGCGA | 1 cut(s) | 192 |
| RsaI | GTAC | 1 cut(s) | 232 |
| RsaNI | GTAC | 1 cut(s) | 231 |
| SatI | GCNGC | 1 cut(s) | 119 |
| SetI | ASST | 3 cut(s) | 31, 123, 236 |
| SfaNI | GCATC | 1 cut(s) | 202 |
| Sse9I | AATT | 3 cut(s) | 139, 166, 286 |
| SsiI | CCGC | 1 cut(s) | 5 |
| SspMI | CTAG | 2 cut(s) | 26, 270 |
| StyI | CCWWGG | 1 cut(s) | 113 |
| TaaI | ACNGT | 1 cut(s) | 302 |
| TaiI | ACGT | 1 cut(s) | 236 |
| TaqII | GACCGA | 1 cut(s) | 84 |
| TasI | AATT | 3 cut(s) | 139, 166, 286 |
| TfiI | GAWTC | 2 cut(s) | 68, 199 |
| TseI | GCWGC | 1 cut(s) | 118 |
| TspDTI | ATGAA | 5 cut(s) | 161, 165, 179, 265, 309 |
| XapI | RAATTY | 1 cut(s) | 166 |
| XceI | RCATGY | 1 cut(s) | 53 |
| XspI | CTAG | 2 cut(s) | 26, 270 |