ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 239 - 323 | 5.1e-10 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 651 |
| AccIII | TCCGGA | 1 cut(s) | 247 |
| AciI | CCGC | 3 cut(s) | 16, 524, 651 |
| AclI | AACGTT | 1 cut(s) | 1064 |
| AcoI | YGGCCR | 2 cut(s) | 34, 689 |
| AcsI | RAATTY | 4 cut(s) | 359, 823, 967, 1015 |
| AfaI | GTAC | 4 cut(s) | 40, 433, 1005, 1027 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 650, 819 |
| AjnI | CCWGG | 2 cut(s) | 586, 742 |
| AluBI | AGCT | 7 cut(s) | 337, 477, 505, 755, 932, 1096, 1115 |
| AluI | AGCT | 7 cut(s) | 337, 477, 505, 755, 932, 1096, 1115 |
| Alw21I | GWGCWC | 1 cut(s) | 1098 |
| Alw26I | GTCTC | 3 cut(s) | 175, 768, 998 |
| Aor13HI | TCCGGA | 1 cut(s) | 247 |
| AoxI | GGCC | 3 cut(s) | 34, 689, 745 |
| ApeKI | GCWGC | 1 cut(s) | 419 |
| ApoI | RAATTY | 4 cut(s) | 359, 823, 967, 1015 |
| AspS9I | GGNCC | 2 cut(s) | 746, 948 |
| AsuHPI | GGTGA | 2 cut(s) | 484, 662 |
| AsuNHI | GCTAGC | 1 cut(s) | 520 |
| AvaII | GGWCC | 1 cut(s) | 948 |
| AxyI | CCTNAGG | 1 cut(s) | 781 |
| BaeGI | GKGCMC | 1 cut(s) | 100 |
| BalI | TGGCCA | 1 cut(s) | 691 |
| BanII | GRGCYC | 2 cut(s) | 160, 1098 |
| BbsI | GAAGAC | 1 cut(s) | 618 |
| Bbv12I | GWGCWC | 1 cut(s) | 1098 |
| BbvI | GCAGC | 1 cut(s) | 406 |
| BccI | CCATC | 2 cut(s) | 405, 716 |
| BceAI | ACGGC | 1 cut(s) | 21 |
| BciT130I | CCWGG | 2 cut(s) | 588, 744 |
| BcoDI | GTCTC | 3 cut(s) | 175, 768, 998 |
| BfaI | CTAG | 5 cut(s) | 258, 521, 882, 945, 1089 |
| BisI | GCNGC | 3 cut(s) | 17, 420, 525 |
| BlsI | GCNGC | 3 cut(s) | 18, 421, 526 |
| Bme1390I | CCNGG | 2 cut(s) | 588, 744 |
| Bme18I | GGWCC | 1 cut(s) | 948 |
| BmgT120I | GGNCC | 2 cut(s) | 746, 948 |
| BmiI | GGNNCC | 3 cut(s) | 318, 660, 893 |
| BmrFI | CCNGG | 2 cut(s) | 588, 744 |
| BmsI | GCATC | 2 cut(s) | 379, 601 |
| BmtI | GCTAGC | 1 cut(s) | 524 |
| BpiI | GAAGAC | 1 cut(s) | 618 |
| BpuEI | CTTGAG | 1 cut(s) | 144 |
| BsaAI | YACGTR | 1 cut(s) | 101 |
| BsaJI | CCNNGG | 4 cut(s) | 152, 701, 814, 962 |
| BsaWI | WCCGGW | 1 cut(s) | 247 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 790, 820 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 650, 819 |
| Bse21I | CCTNAGG | 1 cut(s) | 781 |
| BseAI | TCCGGA | 1 cut(s) | 247 |
| BseBI | CCWGG | 2 cut(s) | 588, 744 |
| BseDI | CCNNGG | 4 cut(s) | 152, 701, 814, 962 |
| BseGI | GGATG | 1 cut(s) | 616 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 650, 819 |
| BseMII | CTCAG | 3 cut(s) | 282, 515, 795 |
| BseRI | GAGGAG | 2 cut(s) | 487, 948 |
| BseSI | GKGCMC | 1 cut(s) | 100 |
| BseXI | GCAGC | 1 cut(s) | 406 |
| Bsh1236I | CGCG | 1 cut(s) | 651 |
| BshFI | GGCC | 3 cut(s) | 36, 691, 747 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1098 |
| BsiSI | CCGG | 1 cut(s) | 248 |
| BslFI | GGGAC | 2 cut(s) | 142, 796 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 650, 819 |
| BsmAI | GTCTC | 3 cut(s) | 175, 768, 998 |
| BsmFI | GGGAC | 2 cut(s) | 142, 796 |
| BsnI | GGCC | 3 cut(s) | 36, 691, 747 |
| Bsp1286I | GDGCHC | 3 cut(s) | 100, 160, 1098 |
| Bsp13I | TCCGGA | 1 cut(s) | 247 |
| Bsp19I | CCATGG | 1 cut(s) | 962 |
| BspACI | CCGC | 3 cut(s) | 16, 524, 651 |
| BspANI | GGCC | 3 cut(s) | 36, 691, 747 |
| BspCNI | CTCAG | 3 cut(s) | 283, 514, 794 |
| BspEI | TCCGGA | 1 cut(s) | 247 |
| BspFNI | CGCG | 1 cut(s) | 651 |
| BspLI | GGNNCC | 3 cut(s) | 318, 660, 893 |
| BspOI | GCTAGC | 1 cut(s) | 524 |
| BssECI | CCNNGG | 4 cut(s) | 152, 701, 814, 962 |
| BssT1I | CCWWGG | 4 cut(s) | 152, 701, 814, 962 |
| Bst2UI | CCWGG | 2 cut(s) | 588, 744 |
| Bst4CI | ACNGT | 1 cut(s) | 482 |
| Bst6I | CTCTTC | 2 cut(s) | 946, 958 |
| BstBAI | YACGTR | 1 cut(s) | 101 |
| BstC8I | GCNNGC | 5 cut(s) | 34, 335, 522, 529, 934 |
| BstDEI | CTNAG | 5 cut(s) | 291, 377, 501, 572, 781 |
| BstDSI | CCRYGG | 1 cut(s) | 962 |
| BstF5I | GGATG | 1 cut(s) | 616 |
| BstFNI | CGCG | 1 cut(s) | 651 |
| BstMAI | GTCTC | 3 cut(s) | 175, 768, 998 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 16, 744 |
| BstNI | CCWGG | 2 cut(s) | 588, 744 |
| BstNSI | RCATGY | 1 cut(s) | 535 |
| BstSCI | CCNGG | 2 cut(s) | 586, 742 |
| BstSLI | GKGCMC | 1 cut(s) | 100 |
| BstUI | CGCG | 1 cut(s) | 651 |
| BstV1I | GCAGC | 1 cut(s) | 406 |
| BstV2I | GAAGAC | 1 cut(s) | 618 |
| Bsu36I | CCTNAGG | 1 cut(s) | 781 |
| BsuRI | GGCC | 3 cut(s) | 36, 691, 747 |
| BtgI | CCRYGG | 1 cut(s) | 962 |
| BtgZI | GCGATG | 2 cut(s) | 424, 1036 |
| BtsCI | GGATG | 1 cut(s) | 616 |
| BtsIMutI | CAGTG | 1 cut(s) | 717 |
| Cac8I | GCNNGC | 5 cut(s) | 34, 335, 522, 529, 934 |
| Cfr13I | GGNCC | 2 cut(s) | 746, 948 |
| Csp6I | GTAC | 4 cut(s) | 39, 432, 1004, 1026 |
| CviAII | CATG | 5 cut(s) | 93, 213, 532, 674, 963 |
| CviQI | GTAC | 4 cut(s) | 39, 432, 1004, 1026 |
| DdeI | CTNAG | 5 cut(s) | 291, 377, 501, 572, 781 |
| EaeI | YGGCCR | 2 cut(s) | 34, 689 |
| Eam1104I | CTCTTC | 2 cut(s) | 946, 958 |
| EarI | CTCTTC | 2 cut(s) | 946, 958 |
| Ecl136II | GAGCTC | 1 cut(s) | 1096 |
| Eco130I | CCWWGG | 4 cut(s) | 152, 701, 814, 962 |
| Eco24I | GRGCYC | 2 cut(s) | 160, 1098 |
| Eco47I | GGWCC | 1 cut(s) | 948 |
| Eco53kI | GAGCTC | 1 cut(s) | 1096 |
| Eco81I | CCTNAGG | 1 cut(s) | 781 |
| EcoICRI | GAGCTC | 1 cut(s) | 1096 |
| EcoO109I | RGGNCCY | 1 cut(s) | 948 |
| EcoRI | GAATTC | 1 cut(s) | 823 |
| EcoRII | CCWGG | 2 cut(s) | 586, 742 |
| EcoT14I | CCWWGG | 4 cut(s) | 152, 701, 814, 962 |
| EcoT38I | GRGCYC | 2 cut(s) | 160, 1098 |
| ErhI | CCWWGG | 4 cut(s) | 152, 701, 814, 962 |
| FaeI | CATG | 5 cut(s) | 96, 216, 535, 677, 966 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 174, 206 |
| FaqI | GGGAC | 2 cut(s) | 142, 796 |
| FatI | CATG | 5 cut(s) | 92, 212, 531, 673, 962 |
| Fnu4HI | GCNGC | 3 cut(s) | 17, 420, 525 |
| FokI | GGATG | 1 cut(s) | 623 |
| FriOI | GRGCYC | 2 cut(s) | 160, 1098 |
| Fsp4HI | GCNGC | 3 cut(s) | 17, 420, 525 |
| FspBI | CTAG | 5 cut(s) | 258, 521, 882, 945, 1089 |
| GluI | GCNGC | 3 cut(s) | 17, 420, 525 |
| HaeIII | GGCC | 3 cut(s) | 36, 691, 747 |
| HapII | CCGG | 1 cut(s) | 248 |
| Hin1II | CATG | 5 cut(s) | 96, 216, 535, 677, 966 |
| HinfI | GANTC | 4 cut(s) | 130, 452, 914, 1050 |
| HpaII | CCGG | 1 cut(s) | 248 |
| HphI | GGTGA | 2 cut(s) | 484, 662 |
| Hpy166II | GTNNAC | 5 cut(s) | 537, 670, 715, 1006, 1068 |
| Hpy188I | TCNGA | 5 cut(s) | 66, 135, 271, 301, 564 |
| Hpy188III | TCNNGA | 4 cut(s) | 79, 248, 608, 773 |
| Hpy8I | GTNNAC | 5 cut(s) | 537, 670, 715, 1006, 1068 |
| HpyAV | CCTTC | 5 cut(s) | 176, 330, 352, 550, 841 |
| HpyCH4III | ACNGT | 1 cut(s) | 482 |
| HpyCH4IV | ACGT | 3 cut(s) | 89, 100, 1064 |
| HpyCH4V | TGCA | 2 cut(s) | 52, 1061 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 16, 744 |
| HpyF3I | CTNAG | 5 cut(s) | 291, 377, 501, 572, 781 |
| HpySE526I | ACGT | 3 cut(s) | 89, 100, 1064 |
| Hsp92II | CATG | 5 cut(s) | 96, 216, 535, 677, 966 |
| Kpn2I | TCCGGA | 1 cut(s) | 247 |
| LmnI | GCTCC | 5 cut(s) | 316, 589, 646, 664, 1101 |
| Lsp1109I | GCAGC | 1 cut(s) | 406 |
| LweI | GCATC | 2 cut(s) | 379, 601 |
| MaeI | CTAG | 5 cut(s) | 258, 521, 882, 945, 1089 |
| MaeII | ACGT | 3 cut(s) | 89, 100, 1064 |
| MaeIII | GTNAC | 5 cut(s) | 101, 119, 142, 236, 590 |
| MboII | GAAGA | 7 cut(s) | 148, 315, 435, 618, 819, 933, 945 |
| MfeI | CAATTG | 1 cut(s) | 988 |
| MhlI | GDGCHC | 3 cut(s) | 100, 160, 1098 |
| MlsI | TGGCCA | 1 cut(s) | 691 |
| MluNI | TGGCCA | 1 cut(s) | 691 |
| MlyI | GAGTC | 2 cut(s) | 124, 446 |
| MmeI | TCCRAC | 1 cut(s) | 885 |
| Mox20I | TGGCCA | 1 cut(s) | 691 |
| MroI | TCCGGA | 1 cut(s) | 247 |
| MscI | TGGCCA | 1 cut(s) | 691 |
| MseI | TTAA | 3 cut(s) | 86, 510, 971 |
| MslI | CAYNNNNRTG | 1 cut(s) | 378 |
| Msp20I | TGGCCA | 1 cut(s) | 691 |
| MspI | CCGG | 1 cut(s) | 248 |
| MspR9I | CCNGG | 2 cut(s) | 588, 744 |
| MunI | CAATTG | 1 cut(s) | 988 |
| MvaI | CCWGG | 2 cut(s) | 588, 744 |
| MvnI | CGCG | 1 cut(s) | 651 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 16, 744 |
| NcoI | CCATGG | 1 cut(s) | 962 |
| NheI | GCTAGC | 1 cut(s) | 520 |
| NlaIII | CATG | 5 cut(s) | 96, 216, 535, 677, 966 |
| NlaIV | GGNNCC | 3 cut(s) | 318, 660, 893 |
| NmuCI | GTSAC | 2 cut(s) | 236, 590 |
| NspI | RCATGY | 1 cut(s) | 535 |
| PfeI | GAWTC | 2 cut(s) | 914, 1050 |
| PkrI | GCNGC | 3 cut(s) | 18, 421, 526 |
| PleI | GAGTC | 2 cut(s) | 124, 446 |
| PpsI | GAGTC | 2 cut(s) | 124, 446 |
| Ppu21I | YACGTR | 1 cut(s) | 101 |
| PpuMI | RGGWCCY | 1 cut(s) | 948 |
| Psp124BI | GAGCTC | 1 cut(s) | 1098 |
| Psp1406I | AACGTT | 1 cut(s) | 1064 |
| Psp5II | RGGWCCY | 1 cut(s) | 948 |
| Psp6I | CCWGG | 2 cut(s) | 586, 742 |
| PspGI | CCWGG | 2 cut(s) | 586, 742 |
| PspN4I | GGNNCC | 3 cut(s) | 318, 660, 893 |
| PspPI | GGNCC | 2 cut(s) | 746, 948 |
| PspPPI | RGGWCCY | 1 cut(s) | 948 |
| RsaI | GTAC | 4 cut(s) | 40, 433, 1005, 1027 |
| RsaNI | GTAC | 4 cut(s) | 39, 432, 1004, 1026 |
| RseI | CAYNNNNRTG | 1 cut(s) | 378 |
| SacI | GAGCTC | 1 cut(s) | 1098 |
| SaqAI | TTAA | 3 cut(s) | 86, 510, 971 |
| SatI | GCNGC | 3 cut(s) | 17, 420, 525 |
| Sau96I | GGNCC | 2 cut(s) | 746, 948 |
| SchI | GAGTC | 2 cut(s) | 124, 446 |
| ScrFI | CCNGG | 2 cut(s) | 588, 744 |
| SduI | GDGCHC | 3 cut(s) | 100, 160, 1098 |
| SfaNI | GCATC | 2 cut(s) | 379, 601 |
| SinI | GGWCC | 1 cut(s) | 948 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 378 |
| SmlI | CTYRAG | 1 cut(s) | 159 |
| SmoI | CTYRAG | 1 cut(s) | 159 |
| SsiI | CCGC | 3 cut(s) | 16, 524, 651 |
| SspMI | CTAG | 5 cut(s) | 258, 521, 882, 945, 1089 |
| SstI | GAGCTC | 1 cut(s) | 1098 |
| StyD4I | CCNGG | 2 cut(s) | 586, 742 |
| StyI | CCWWGG | 4 cut(s) | 152, 701, 814, 962 |
| TaaI | ACNGT | 1 cut(s) | 482 |
| TaiI | ACGT | 3 cut(s) | 92, 103, 1067 |
| TaqI | TCGA | 3 cut(s) | 484, 772, 867 |
| TatI | WGTACW | 2 cut(s) | 1003, 1025 |
| TauI | GCSGC | 2 cut(s) | 19, 527 |
| TfiI | GAWTC | 2 cut(s) | 914, 1050 |
| Tru1I | TTAA | 3 cut(s) | 86, 510, 971 |
| Tru9I | TTAA | 3 cut(s) | 86, 510, 971 |
| TscAI | CASTG | 1 cut(s) | 724 |
| TseFI | GTSAC | 2 cut(s) | 236, 590 |
| TseI | GCWGC | 1 cut(s) | 419 |
| Tsp45I | GTSAC | 2 cut(s) | 236, 590 |
| TspDTI | ATGAA | 4 cut(s) | 201, 372, 1028, 1137 |
| TspRI | CASTG | 1 cut(s) | 724 |
| VpaK11BI | GGWCC | 1 cut(s) | 948 |
| XapI | RAATTY | 4 cut(s) | 359, 823, 967, 1015 |
| XceI | RCATGY | 1 cut(s) | 535 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 699 |
| XspI | CTAG | 5 cut(s) | 258, 521, 882, 945, 1089 |