ribonuclease H protein At1g65750-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 199 - 308 | 5.2e-18 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 210 |
| AccII | CGCG | 1 cut(s) | 888 |
| AciI | CCGC | 3 cut(s) | 356, 653, 905 |
| AclWI | GGATC | 1 cut(s) | 135 |
| AcsI | RAATTY | 2 cut(s) | 82, 157 |
| AcuI | CTGAAG | 2 cut(s) | 677, 779 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 489, 997 |
| AgsI | TTSAA | 3 cut(s) | 600, 755, 835 |
| AjnI | CCWGG | 1 cut(s) | 229 |
| AluBI | AGCT | 6 cut(s) | 152, 368, 439, 539, 691, 917 |
| AluI | AGCT | 6 cut(s) | 152, 368, 439, 539, 691, 917 |
| Alw21I | GWGCWC | 3 cut(s) | 52, 450, 976 |
| Alw44I | GTGCAC | 2 cut(s) | 446, 972 |
| AlwI | GGATC | 1 cut(s) | 135 |
| Ama87I | CYCGRG | 1 cut(s) | 990 |
| AoxI | GGCC | 4 cut(s) | 227, 232, 669, 1003 |
| ApaLI | GTGCAC | 2 cut(s) | 446, 972 |
| ApeKI | GCWGC | 2 cut(s) | 152, 506 |
| ApoI | RAATTY | 2 cut(s) | 82, 157 |
| AspLEI | GCGC | 2 cut(s) | 555, 741 |
| AsuHPI | GGTGA | 2 cut(s) | 158, 877 |
| AvaI | CYCGRG | 1 cut(s) | 990 |
| BaeGI | GKGCMC | 2 cut(s) | 450, 976 |
| BanII | GRGCYC | 1 cut(s) | 661 |
| BbsI | GAAGAC | 1 cut(s) | 780 |
| Bbv12I | GWGCWC | 3 cut(s) | 52, 450, 976 |
| BbvI | GCAGC | 2 cut(s) | 139, 518 |
| BccI | CCATC | 2 cut(s) | 177, 509 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 843, 877 |
| BciT130I | CCWGG | 1 cut(s) | 231 |
| BclI | TGATCA | 1 cut(s) | 622 |
| BfmI | CTRYAG | 1 cut(s) | 360 |
| BfoI | RGCGCY | 1 cut(s) | 742 |
| BisI | GCNGC | 2 cut(s) | 153, 507 |
| BlpI | GCTNAGC | 1 cut(s) | 687 |
| BlsI | GCNGC | 2 cut(s) | 154, 508 |
| Bme1390I | CCNGG | 1 cut(s) | 231 |
| BmeT110I | CYCGRG | 1 cut(s) | 990 |
| BmiI | GGNNCC | 1 cut(s) | 286 |
| BmrFI | CCNGG | 1 cut(s) | 231 |
| BmsI | GCATC | 3 cut(s) | 319, 731, 863 |
| BoxI | GACNNNNGTC | 1 cut(s) | 960 |
| BpiI | GAAGAC | 1 cut(s) | 780 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 687 |
| BsaWI | WCCGGW | 1 cut(s) | 287 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 489, 997 |
| Bse1I | ACTGG | 3 cut(s) | 15, 89, 424 |
| BseBI | CCWGG | 1 cut(s) | 231 |
| BseGI | GGATG | 3 cut(s) | 137, 468, 520 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 489, 997 |
| BseMII | CTCAG | 1 cut(s) | 678 |
| BseNI | ACTGG | 3 cut(s) | 15, 89, 424 |
| BseSI | GKGCMC | 2 cut(s) | 450, 976 |
| BseXI | GCAGC | 2 cut(s) | 139, 518 |
| Bsh1236I | CGCG | 1 cut(s) | 888 |
| BshFI | GGCC | 4 cut(s) | 229, 234, 671, 1005 |
| BsiHKAI | GWGCWC | 3 cut(s) | 52, 450, 976 |
| BsiHKCI | CYCGRG | 1 cut(s) | 990 |
| BsiSI | CCGG | 1 cut(s) | 288 |
| BslFI | GGGAC | 1 cut(s) | 968 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 489, 997 |
| BsmFI | GGGAC | 1 cut(s) | 968 |
| BsmI | GAATGC | 2 cut(s) | 214, 595 |
| BsnI | GGCC | 4 cut(s) | 229, 234, 671, 1005 |
| BsoBI | CYCGRG | 1 cut(s) | 990 |
| Bsp1286I | GDGCHC | 4 cut(s) | 52, 450, 661, 976 |
| Bsp143I | GATC | 2 cut(s) | 127, 622 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 687 |
| Bsp68I | TCGCGA | 1 cut(s) | 888 |
| BspACI | CCGC | 3 cut(s) | 356, 653, 905 |
| BspANI | GGCC | 4 cut(s) | 229, 234, 671, 1005 |
| BspCNI | CTCAG | 1 cut(s) | 679 |
| BspFNI | CGCG | 1 cut(s) | 888 |
| BspHI | TCATGA | 2 cut(s) | 313, 706 |
| BspLI | GGNNCC | 1 cut(s) | 286 |
| BspMAI | CTGCAG | 1 cut(s) | 364 |
| BspPI | GGATC | 1 cut(s) | 135 |
| BsrI | ACTGG | 3 cut(s) | 15, 89, 424 |
| BssMI | GATC | 2 cut(s) | 127, 622 |
| Bst2UI | CCWGG | 1 cut(s) | 231 |
| Bst4CI | ACNGT | 4 cut(s) | 28, 198, 529, 839 |
| Bst6I | CTCTTC | 1 cut(s) | 798 |
| BstC8I | GCNNGC | 3 cut(s) | 360, 852, 1003 |
| BstDEI | CTNAG | 3 cut(s) | 369, 662, 687 |
| BstEII | GGTNACC | 1 cut(s) | 474 |
| BstF5I | GGATG | 3 cut(s) | 137, 468, 520 |
| BstFNI | CGCG | 1 cut(s) | 888 |
| BstH2I | RGCGCY | 1 cut(s) | 742 |
| BstHHI | GCGC | 2 cut(s) | 555, 741 |
| BstKTI | GATC | 2 cut(s) | 130, 625 |
| BstMBI | GATC | 2 cut(s) | 127, 622 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 445, 683 |
| BstNI | CCWGG | 1 cut(s) | 231 |
| BstNSI | RCATGY | 1 cut(s) | 638 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 960 |
| BstPI | GGTNACC | 1 cut(s) | 474 |
| BstSCI | CCNGG | 1 cut(s) | 229 |
| BstSFI | CTRYAG | 1 cut(s) | 360 |
| BstSLI | GKGCMC | 2 cut(s) | 450, 976 |
| BstUI | CGCG | 1 cut(s) | 888 |
| BstV1I | GCAGC | 2 cut(s) | 139, 518 |
| BstV2I | GAAGAC | 1 cut(s) | 780 |
| BstX2I | RGATCY | 1 cut(s) | 127 |
| BstYI | RGATCY | 1 cut(s) | 127 |
| BsuRI | GGCC | 4 cut(s) | 229, 234, 671, 1005 |
| BtsCI | GGATG | 3 cut(s) | 137, 468, 520 |
| BtsIMutI | CAGTG | 1 cut(s) | 431 |
| BtuMI | TCGCGA | 1 cut(s) | 888 |
| Cac8I | GCNNGC | 3 cut(s) | 360, 852, 1003 |
| CciI | TCATGA | 2 cut(s) | 313, 706 |
| CfoI | GCGC | 2 cut(s) | 555, 741 |
| CviAII | CATG | 3 cut(s) | 314, 635, 707 |
| DdeI | CTNAG | 3 cut(s) | 369, 662, 687 |
| DpnI | GATC | 2 cut(s) | 129, 624 |
| DpnII | GATC | 2 cut(s) | 127, 622 |
| DraI | TTTAAA | 1 cut(s) | 549 |
| Eam1104I | CTCTTC | 1 cut(s) | 798 |
| EarI | CTCTTC | 1 cut(s) | 798 |
| EciI | GGCGGA | 1 cut(s) | 345 |
| Eco147I | AGGCCT | 1 cut(s) | 1005 |
| Eco24I | GRGCYC | 1 cut(s) | 661 |
| Eco57I | CTGAAG | 2 cut(s) | 677, 779 |
| Eco88I | CYCGRG | 1 cut(s) | 990 |
| Eco91I | GGTNACC | 1 cut(s) | 474 |
| EcoO65I | GGTNACC | 1 cut(s) | 474 |
| EcoRII | CCWGG | 1 cut(s) | 229 |
| EcoT38I | GRGCYC | 1 cut(s) | 661 |
| FaeI | CATG | 3 cut(s) | 317, 638, 710 |
| FaqI | GGGAC | 1 cut(s) | 968 |
| FatI | CATG | 3 cut(s) | 313, 634, 706 |
| FauI | CCCGC | 1 cut(s) | 646 |
| FbaI | TGATCA | 1 cut(s) | 622 |
| Fnu4HI | GCNGC | 2 cut(s) | 153, 507 |
| FokI | GGATG | 3 cut(s) | 124, 475, 527 |
| FriOI | GRGCYC | 1 cut(s) | 661 |
| Fsp4HI | GCNGC | 2 cut(s) | 153, 507 |
| GlaI | GCGC | 2 cut(s) | 554, 740 |
| GluI | GCNGC | 2 cut(s) | 153, 507 |
| HaeII | RGCGCY | 1 cut(s) | 742 |
| HaeIII | GGCC | 4 cut(s) | 229, 234, 671, 1005 |
| HapII | CCGG | 1 cut(s) | 288 |
| HhaI | GCGC | 2 cut(s) | 555, 741 |
| Hin1II | CATG | 3 cut(s) | 317, 638, 710 |
| Hin6I | GCGC | 2 cut(s) | 553, 739 |
| HinP1I | GCGC | 2 cut(s) | 553, 739 |
| HinfI | GANTC | 4 cut(s) | 703, 761, 908, 956 |
| HpaII | CCGG | 1 cut(s) | 288 |
| HphI | GGTGA | 2 cut(s) | 158, 877 |
| Hpy166II | GTNNAC | 2 cut(s) | 448, 974 |
| Hpy188I | TCNGA | 1 cut(s) | 798 |
| Hpy188III | TCNNGA | 7 cut(s) | 179, 259, 314, 620, 707, 887, 990 |
| Hpy8I | GTNNAC | 2 cut(s) | 448, 974 |
| HpyAV | CCTTC | 3 cut(s) | 245, 453, 1016 |
| HpyCH4III | ACNGT | 4 cut(s) | 28, 198, 529, 839 |
| HpyCH4IV | ACGT | 1 cut(s) | 386 |
| HpyCH4V | TGCA | 7 cut(s) | 201, 362, 448, 722, 854, 974, 1025 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 445, 683 |
| HpyF3I | CTNAG | 3 cut(s) | 369, 662, 687 |
| HpySE526I | ACGT | 1 cut(s) | 386 |
| Hsp92II | CATG | 3 cut(s) | 317, 638, 710 |
| HspAI | GCGC | 2 cut(s) | 553, 739 |
| Ksp22I | TGATCA | 1 cut(s) | 622 |
| Kzo9I | GATC | 2 cut(s) | 127, 622 |
| LmnI | GCTCC | 2 cut(s) | 55, 290 |
| Lsp1109I | GCAGC | 2 cut(s) | 139, 518 |
| LweI | GCATC | 3 cut(s) | 319, 731, 863 |
| MaeII | ACGT | 1 cut(s) | 386 |
| MaeIII | GTNAC | 4 cut(s) | 431, 474, 758, 805 |
| MalI | GATC | 2 cut(s) | 129, 624 |
| MboI | GATC | 2 cut(s) | 127, 622 |
| MboII | GAAGA | 5 cut(s) | 101, 210, 384, 780, 785 |
| MflI | RGATCY | 1 cut(s) | 127 |
| MhlI | GDGCHC | 4 cut(s) | 52, 450, 661, 976 |
| MluCI | AATT | 8 cut(s) | 82, 157, 202, 297, 774, 826, 919, 1012 |
| MlyI | GAGTC | 2 cut(s) | 755, 950 |
| MnlI | CCTC | 6 cut(s) | 55, 336, 465, 490, 676, 975 |
| MseI | TTAA | 6 cut(s) | 96, 114, 134, 347, 524, 548 |
| MspI | CCGG | 1 cut(s) | 288 |
| MspR9I | CCNGG | 1 cut(s) | 231 |
| Mva1269I | GAATGC | 2 cut(s) | 214, 595 |
| MvaI | CCWGG | 1 cut(s) | 231 |
| MvnI | CGCG | 1 cut(s) | 888 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 445, 683 |
| NdeII | GATC | 2 cut(s) | 127, 622 |
| NlaIII | CATG | 3 cut(s) | 317, 638, 710 |
| NlaIV | GGNNCC | 1 cut(s) | 286 |
| NmeAIII | GCCGAG | 1 cut(s) | 743 |
| NmuCI | GTSAC | 1 cut(s) | 758 |
| NruI | TCGCGA | 1 cut(s) | 888 |
| NspI | RCATGY | 1 cut(s) | 638 |
| PagI | TCATGA | 2 cut(s) | 313, 706 |
| PceI | AGGCCT | 1 cut(s) | 1005 |
| PctI | GAATGC | 2 cut(s) | 214, 595 |
| PfeI | GAWTC | 2 cut(s) | 703, 908 |
| PkrI | GCNGC | 2 cut(s) | 154, 508 |
| PleI | GAGTC | 2 cut(s) | 755, 950 |
| PpsI | GAGTC | 2 cut(s) | 755, 950 |
| PshAI | GACNNNNGTC | 1 cut(s) | 960 |
| PsiI | TTATAA | 1 cut(s) | 210 |
| Psp6I | CCWGG | 1 cut(s) | 229 |
| PspEI | GGTNACC | 1 cut(s) | 474 |
| PspGI | CCWGG | 1 cut(s) | 229 |
| PspN4I | GGNNCC | 1 cut(s) | 286 |
| PstI | CTGCAG | 1 cut(s) | 364 |
| PsuI | RGATCY | 1 cut(s) | 127 |
| RruI | TCGCGA | 1 cut(s) | 888 |
| SaqAI | TTAA | 6 cut(s) | 96, 114, 134, 347, 524, 548 |
| SatI | GCNGC | 2 cut(s) | 153, 507 |
| Sau3AI | GATC | 2 cut(s) | 127, 622 |
| SchI | GAGTC | 2 cut(s) | 755, 950 |
| ScrFI | CCNGG | 1 cut(s) | 231 |
| SduI | GDGCHC | 4 cut(s) | 52, 450, 661, 976 |
| SfaNI | GCATC | 3 cut(s) | 319, 731, 863 |
| SfcI | CTRYAG | 1 cut(s) | 360 |
| Sse9I | AATT | 8 cut(s) | 82, 157, 202, 297, 774, 826, 919, 1012 |
| SseBI | AGGCCT | 1 cut(s) | 1005 |
| SsiI | CCGC | 3 cut(s) | 356, 653, 905 |
| SspI | AATATT | 1 cut(s) | 352 |
| StuI | AGGCCT | 1 cut(s) | 1005 |
| StyD4I | CCNGG | 1 cut(s) | 229 |
| TaaI | ACNGT | 4 cut(s) | 28, 198, 529, 839 |
| TaiI | ACGT | 1 cut(s) | 389 |
| TasI | AATT | 8 cut(s) | 82, 157, 202, 297, 774, 826, 919, 1012 |
| TfiI | GAWTC | 2 cut(s) | 703, 908 |
| Tru1I | TTAA | 6 cut(s) | 96, 114, 134, 347, 524, 548 |
| Tru9I | TTAA | 6 cut(s) | 96, 114, 134, 347, 524, 548 |
| TscAI | CASTG | 1 cut(s) | 431 |
| TseFI | GTSAC | 1 cut(s) | 758 |
| TseI | GCWGC | 2 cut(s) | 152, 506 |
| Tsp45I | GTSAC | 1 cut(s) | 758 |
| TspDTI | ATGAA | 7 cut(s) | 384, 388, 392, 695, 704, 767, 935 |
| TspRI | CASTG | 1 cut(s) | 431 |
| VneI | GTGCAC | 2 cut(s) | 446, 972 |
| XapI | RAATTY | 2 cut(s) | 82, 157 |
| XceI | RCATGY | 1 cut(s) | 638 |