Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 156 - 276 | 1.2e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 923 |
| AciI | CCGC | 1 cut(s) | 549 |
| AclWI | GGATC | 3 cut(s) | 51, 291, 897 |
| AcuI | CTGAAG | 1 cut(s) | 299 |
| AdeI | CACNNNGTG | 1 cut(s) | 732 |
| AfaI | GTAC | 2 cut(s) | 897, 946 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 131 |
| AflIII | ACRYGT | 1 cut(s) | 646 |
| AgeI | ACCGGT | 1 cut(s) | 131 |
| AgsI | TTSAA | 3 cut(s) | 64, 683, 762 |
| AhlI | ACTAGT | 1 cut(s) | 755 |
| AjnI | CCWGG | 2 cut(s) | 337, 493 |
| AluBI | AGCT | 6 cut(s) | 19, 308, 463, 506, 595, 634 |
| AluI | AGCT | 6 cut(s) | 19, 308, 463, 506, 595, 634 |
| Alw26I | GTCTC | 3 cut(s) | 246, 453, 519 |
| AlwI | GGATC | 3 cut(s) | 51, 291, 897 |
| AoxI | GGCC | 2 cut(s) | 171, 497 |
| ApeKI | GCWGC | 2 cut(s) | 105, 503 |
| AsiGI | ACCGGT | 1 cut(s) | 131 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 757 |
| AspS9I | GGNCC | 1 cut(s) | 497 |
| AsuHPI | GGTGA | 2 cut(s) | 353, 400 |
| BanI | GGYRCC | 1 cut(s) | 923 |
| BanII | GRGCYC | 1 cut(s) | 409 |
| BbvI | GCAGC | 2 cut(s) | 92, 515 |
| BccI | CCATC | 4 cut(s) | 133, 220, 283, 467 |
| BciT130I | CCWGG | 2 cut(s) | 339, 495 |
| BcoDI | GTCTC | 3 cut(s) | 246, 453, 519 |
| BcuI | ACTAGT | 1 cut(s) | 755 |
| BfaI | CTAG | 4 cut(s) | 38, 750, 756, 973 |
| BfmI | CTRYAG | 2 cut(s) | 346, 854 |
| BisI | GCNGC | 2 cut(s) | 106, 504 |
| BlsI | GCNGC | 2 cut(s) | 107, 505 |
| Bme1390I | CCNGG | 2 cut(s) | 339, 495 |
| BmgT120I | GGNCC | 1 cut(s) | 497 |
| BmiI | GGNNCC | 1 cut(s) | 925 |
| BmrFI | CCNGG | 2 cut(s) | 339, 495 |
| BmsI | GCATC | 2 cut(s) | 352, 445 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 650, 682 |
| BpuEI | CTTGAG | 2 cut(s) | 385, 677 |
| BsaJI | CCNNGG | 3 cut(s) | 452, 494, 713 |
| BsaWI | WCCGGW | 2 cut(s) | 131, 420 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 131 |
| Bse118I | RCCGGY | 2 cut(s) | 131, 499 |
| Bse3DI | GCAATG | 1 cut(s) | 98 |
| BseBI | CCWGG | 2 cut(s) | 339, 495 |
| BseDI | CCNNGG | 3 cut(s) | 452, 494, 713 |
| BseGI | GGATG | 2 cut(s) | 125, 436 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 131 |
| BseMI | GCAATG | 1 cut(s) | 98 |
| BseMII | CTCAG | 2 cut(s) | 197, 582 |
| BseRI | GAGGAG | 1 cut(s) | 318 |
| BseXI | GCAGC | 2 cut(s) | 92, 515 |
| BshFI | GGCC | 2 cut(s) | 173, 499 |
| BshNI | GGYRCC | 1 cut(s) | 923 |
| BshTI | ACCGGT | 1 cut(s) | 131 |
| BsiSI | CCGG | 3 cut(s) | 132, 421, 500 |
| BslFI | GGGAC | 2 cut(s) | 167, 692 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 131 |
| BsmAI | GTCTC | 3 cut(s) | 246, 453, 519 |
| BsmFI | GGGAC | 2 cut(s) | 167, 692 |
| BsmI | GAATGC | 1 cut(s) | 689 |
| BsnI | GGCC | 2 cut(s) | 173, 499 |
| Bsp1286I | GDGCHC | 1 cut(s) | 409 |
| Bsp1407I | TGTACA | 1 cut(s) | 895 |
| Bsp143I | GATC | 3 cut(s) | 43, 296, 889 |
| Bsp19I | CCATGG | 1 cut(s) | 452 |
| BspACI | CCGC | 1 cut(s) | 549 |
| BspANI | GGCC | 2 cut(s) | 173, 499 |
| BspCNI | CTCAG | 2 cut(s) | 196, 583 |
| BspLI | GGNNCC | 1 cut(s) | 925 |
| BspMAI | CTGCAG | 1 cut(s) | 858 |
| BspPI | GGATC | 3 cut(s) | 51, 291, 897 |
| BspT107I | GGYRCC | 1 cut(s) | 923 |
| BsrDI | GCAATG | 1 cut(s) | 98 |
| BsrFI | RCCGGY | 2 cut(s) | 131, 499 |
| BsrGI | TGTACA | 1 cut(s) | 895 |
| BssAI | RCCGGY | 2 cut(s) | 131, 499 |
| BssECI | CCNNGG | 3 cut(s) | 452, 494, 713 |
| BssMI | GATC | 3 cut(s) | 43, 296, 889 |
| BssT1I | CCWWGG | 1 cut(s) | 452 |
| Bst2UI | CCWGG | 2 cut(s) | 339, 495 |
| Bst4CI | ACNGT | 5 cut(s) | 258, 347, 743, 805, 969 |
| Bst6I | CTCTTC | 1 cut(s) | 126 |
| BstAUI | TGTACA | 1 cut(s) | 895 |
| BstC8I | GCNNGC | 5 cut(s) | 99, 103, 204, 501, 641 |
| BstDEI | CTNAG | 4 cut(s) | 183, 358, 591, 693 |
| BstDSI | CCRYGG | 2 cut(s) | 452, 713 |
| BstF5I | GGATG | 2 cut(s) | 125, 436 |
| BstKTI | GATC | 3 cut(s) | 46, 299, 892 |
| BstMAI | GTCTC | 3 cut(s) | 246, 453, 519 |
| BstMBI | GATC | 3 cut(s) | 43, 296, 889 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 179, 332, 555, 640 |
| BstNI | CCWGG | 2 cut(s) | 339, 495 |
| BstNSI | RCATGY | 1 cut(s) | 650 |
| BstSCI | CCNGG | 2 cut(s) | 337, 493 |
| BstSFI | CTRYAG | 2 cut(s) | 346, 854 |
| BstV1I | GCAGC | 2 cut(s) | 92, 515 |
| BsuRI | GGCC | 2 cut(s) | 173, 499 |
| BtgI | CCRYGG | 2 cut(s) | 452, 713 |
| BtgZI | GCGATG | 1 cut(s) | 924 |
| BtsCI | GGATG | 2 cut(s) | 125, 436 |
| BtsIMutI | CAGTG | 1 cut(s) | 801 |
| Cac8I | GCNNGC | 5 cut(s) | 99, 103, 204, 501, 641 |
| Cfr10I | RCCGGY | 2 cut(s) | 131, 499 |
| Cfr13I | GGNCC | 1 cut(s) | 497 |
| Csp6I | GTAC | 2 cut(s) | 896, 945 |
| CspAI | ACCGGT | 1 cut(s) | 131 |
| CviAII | CATG | 7 cut(s) | 332, 453, 647, 782, 893, 899, 942 |
| CviQI | GTAC | 2 cut(s) | 896, 945 |
| DdeI | CTNAG | 4 cut(s) | 183, 358, 591, 693 |
| DpnI | GATC | 3 cut(s) | 45, 298, 891 |
| DpnII | GATC | 3 cut(s) | 43, 296, 889 |
| DraIII | CACNNNGTG | 1 cut(s) | 732 |
| Eam1104I | CTCTTC | 1 cut(s) | 126 |
| EarI | CTCTTC | 1 cut(s) | 126 |
| EciI | GGCGGA | 1 cut(s) | 564 |
| Eco130I | CCWWGG | 1 cut(s) | 452 |
| Eco147I | AGGCCT | 1 cut(s) | 173 |
| Eco24I | GRGCYC | 1 cut(s) | 409 |
| Eco57I | CTGAAG | 1 cut(s) | 299 |
| EcoRII | CCWGG | 2 cut(s) | 337, 493 |
| EcoT14I | CCWWGG | 1 cut(s) | 452 |
| EcoT38I | GRGCYC | 1 cut(s) | 409 |
| ErhI | CCWWGG | 1 cut(s) | 452 |
| FaeI | CATG | 7 cut(s) | 335, 456, 650, 785, 896, 902, 945 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 297, 329 |
| FaqI | GGGAC | 2 cut(s) | 167, 692 |
| FatI | CATG | 7 cut(s) | 331, 452, 646, 781, 892, 898, 941 |
| Fnu4HI | GCNGC | 2 cut(s) | 106, 504 |
| FokI | GGATG | 2 cut(s) | 112, 423 |
| FriOI | GRGCYC | 1 cut(s) | 409 |
| Fsp4HI | GCNGC | 2 cut(s) | 106, 504 |
| FspBI | CTAG | 4 cut(s) | 38, 750, 756, 973 |
| GluI | GCNGC | 2 cut(s) | 106, 504 |
| HaeIII | GGCC | 2 cut(s) | 173, 499 |
| HapII | CCGG | 3 cut(s) | 132, 421, 500 |
| Hin1II | CATG | 7 cut(s) | 335, 456, 650, 785, 896, 902, 945 |
| HindIII | AAGCTT | 2 cut(s) | 306, 461 |
| HinfI | GANTC | 6 cut(s) | 49, 155, 417, 490, 665, 816 |
| HpaII | CCGG | 3 cut(s) | 132, 421, 500 |
| HphI | GGTGA | 2 cut(s) | 353, 400 |
| Hpy188I | TCNGA | 2 cut(s) | 48, 592 |
| Hpy188III | TCNNGA | 3 cut(s) | 38, 402, 524 |
| HpyAV | CCTTC | 2 cut(s) | 184, 788 |
| HpyCH4III | ACNGT | 5 cut(s) | 258, 347, 743, 805, 969 |
| HpyCH4V | TGCA | 3 cut(s) | 77, 206, 856 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 179, 332, 555, 640 |
| HpyF3I | CTNAG | 4 cut(s) | 183, 358, 591, 693 |
| Hsp92II | CATG | 7 cut(s) | 335, 456, 650, 785, 896, 902, 945 |
| KroI | GCCGGC | 1 cut(s) | 499 |
| KroNI | GCCGGC | 1 cut(s) | 501 |
| Kzo9I | GATC | 3 cut(s) | 43, 296, 889 |
| LmnI | GCTCC | 2 cut(s) | 331, 340 |
| LpnPI | CCDG | 9 cut(s) | 145, 324, 351, 434, 480, 507, 513, 625, 870 |
| Lsp1109I | GCAGC | 2 cut(s) | 92, 515 |
| LweI | GCATC | 2 cut(s) | 352, 445 |
| MaeI | CTAG | 4 cut(s) | 38, 750, 756, 973 |
| MaeIII | GTNAC | 4 cut(s) | 252, 341, 388, 662 |
| MalI | GATC | 3 cut(s) | 45, 298, 891 |
| MboI | GATC | 3 cut(s) | 43, 296, 889 |
| MboII | GAAGA | 2 cut(s) | 108, 113 |
| MfeI | CAATTG | 2 cut(s) | 64, 368 |
| MhlI | GDGCHC | 1 cut(s) | 409 |
| MluCI | AATT | 6 cut(s) | 25, 64, 368, 620, 719, 823 |
| MlyI | GAGTC | 4 cut(s) | 43, 149, 659, 810 |
| MnlI | CCTC | 8 cut(s) | 34, 203, 339, 409, 450, 720, 852, 899 |
| MroNI | GCCGGC | 1 cut(s) | 499 |
| MroXI | GAANNNNTTC | 1 cut(s) | 757 |
| MseI | TTAA | 6 cut(s) | 303, 378, 459, 465, 831, 840 |
| MslI | CAYNNNNRTG | 2 cut(s) | 576, 897 |
| MspI | CCGG | 3 cut(s) | 132, 421, 500 |
| MspR9I | CCNGG | 2 cut(s) | 339, 495 |
| MunI | CAATTG | 2 cut(s) | 64, 368 |
| Mva1269I | GAATGC | 1 cut(s) | 689 |
| MvaI | CCWGG | 2 cut(s) | 339, 495 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 179, 332, 555, 640 |
| NaeI | GCCGGC | 1 cut(s) | 501 |
| NcoI | CCATGG | 1 cut(s) | 452 |
| NdeII | GATC | 3 cut(s) | 43, 296, 889 |
| NgoMIV | GCCGGC | 1 cut(s) | 499 |
| NlaIII | CATG | 7 cut(s) | 335, 456, 650, 785, 896, 902, 945 |
| NlaIV | GGNNCC | 1 cut(s) | 925 |
| NmeAIII | GCCGAG | 1 cut(s) | 615 |
| NmuCI | GTSAC | 3 cut(s) | 341, 388, 662 |
| NspI | RCATGY | 1 cut(s) | 650 |
| PceI | AGGCCT | 1 cut(s) | 173 |
| PciI | ACATGT | 1 cut(s) | 646 |
| PctI | GAATGC | 1 cut(s) | 689 |
| PdiI | GCCGGC | 1 cut(s) | 501 |
| PdmI | GAANNNNTTC | 1 cut(s) | 757 |
| PfeI | GAWTC | 2 cut(s) | 417, 490 |
| PinAI | ACCGGT | 1 cut(s) | 131 |
| PkrI | GCNGC | 2 cut(s) | 107, 505 |
| PleI | GAGTC | 4 cut(s) | 43, 149, 659, 810 |
| PpsI | GAGTC | 4 cut(s) | 43, 149, 659, 810 |
| PscI | ACATGT | 1 cut(s) | 646 |
| Psp6I | CCWGG | 2 cut(s) | 337, 493 |
| PspGI | CCWGG | 2 cut(s) | 337, 493 |
| PspN4I | GGNNCC | 1 cut(s) | 925 |
| PspPI | GGNCC | 1 cut(s) | 497 |
| PstI | CTGCAG | 1 cut(s) | 858 |
| RsaI | GTAC | 2 cut(s) | 897, 946 |
| RsaNI | GTAC | 2 cut(s) | 896, 945 |
| RseI | CAYNNNNRTG | 2 cut(s) | 576, 897 |
| SaqAI | TTAA | 6 cut(s) | 303, 378, 459, 465, 831, 840 |
| SatI | GCNGC | 2 cut(s) | 106, 504 |
| Sau3AI | GATC | 3 cut(s) | 43, 296, 889 |
| Sau96I | GGNCC | 1 cut(s) | 497 |
| SchI | GAGTC | 4 cut(s) | 43, 149, 659, 810 |
| ScrFI | CCNGG | 2 cut(s) | 339, 495 |
| SduI | GDGCHC | 1 cut(s) | 409 |
| SfaNI | GCATC | 2 cut(s) | 352, 445 |
| SfcI | CTRYAG | 2 cut(s) | 346, 854 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 576, 897 |
| SmlI | CTYRAG | 2 cut(s) | 400, 656 |
| SmoI | CTYRAG | 2 cut(s) | 400, 656 |
| SpeI | ACTAGT | 1 cut(s) | 755 |
| Sse9I | AATT | 6 cut(s) | 25, 64, 368, 620, 719, 823 |
| SseBI | AGGCCT | 1 cut(s) | 173 |
| SsiI | CCGC | 1 cut(s) | 549 |
| SspMI | CTAG | 4 cut(s) | 38, 750, 756, 973 |
| StuI | AGGCCT | 1 cut(s) | 173 |
| StyD4I | CCNGG | 2 cut(s) | 337, 493 |
| StyI | CCWWGG | 1 cut(s) | 452 |
| TaaI | ACNGT | 5 cut(s) | 258, 347, 743, 805, 969 |
| TaqI | TCGA | 3 cut(s) | 295, 523, 850 |
| TasI | AATT | 6 cut(s) | 25, 64, 368, 620, 719, 823 |
| TatI | WGTACW | 2 cut(s) | 895, 944 |
| TfiI | GAWTC | 2 cut(s) | 417, 490 |
| Tru1I | TTAA | 6 cut(s) | 303, 378, 459, 465, 831, 840 |
| Tru9I | TTAA | 6 cut(s) | 303, 378, 459, 465, 831, 840 |
| TscAI | CASTG | 1 cut(s) | 808 |
| TseFI | GTSAC | 3 cut(s) | 341, 388, 662 |
| TseI | GCWGC | 2 cut(s) | 105, 503 |
| Tsp45I | GTSAC | 3 cut(s) | 341, 388, 662 |
| TspDTI | ATGAA | 2 cut(s) | 532, 915 |
| TspGWI | ACGGA | 1 cut(s) | 702 |
| TspRI | CASTG | 1 cut(s) | 808 |
| XbaI | TCTAGA | 1 cut(s) | 37 |
| XceI | RCATGY | 1 cut(s) | 650 |
| XmnI | GAANNNNTTC | 1 cut(s) | 757 |
| XspI | CTAG | 4 cut(s) | 38, 750, 756, 973 |