ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| p450 | PF00067 | 8 - 360 | 2.1e-79 | Cytochrome P450 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 954 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1096 |
| AccBSI | CCGCTC | 2 cut(s) | 742, 900 |
| AccII | CGCG | 1 cut(s) | 35 |
| AciI | CCGC | 5 cut(s) | 35, 355, 542, 740, 900 |
| AclWI | GGATC | 4 cut(s) | 87, 135, 1081, 1094 |
| AcsI | RAATTY | 1 cut(s) | 869 |
| AcvI | CACGTG | 1 cut(s) | 800 |
| AfaI | GTAC | 2 cut(s) | 621, 728 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 223, 852, 1096 |
| AgsI | TTSAA | 5 cut(s) | 44, 160, 664, 688, 874 |
| AjnI | CCWGG | 1 cut(s) | 216 |
| AloI | GAACNNNNNNTCC | 6 cut(s) | 140, 172, 777, 809, 993, 1025 |
| AluBI | AGCT | 4 cut(s) | 13, 265, 626, 761 |
| AluI | AGCT | 4 cut(s) | 13, 265, 626, 761 |
| Alw21I | GWGCWC | 1 cut(s) | 15 |
| Alw26I | GTCTC | 2 cut(s) | 35, 834 |
| AlwI | GGATC | 4 cut(s) | 87, 135, 1081, 1094 |
| Ama87I | CYCGRG | 3 cut(s) | 8, 845, 959 |
| AoxI | GGCC | 2 cut(s) | 219, 828 |
| ApeKI | GCWGC | 1 cut(s) | 99 |
| ApoI | RAATTY | 1 cut(s) | 869 |
| AseI | ATTAAT | 1 cut(s) | 819 |
| AspS9I | GGNCC | 3 cut(s) | 214, 828, 859 |
| AsuC2I | CCSGG | 3 cut(s) | 68, 960, 961 |
| AsuHPI | GGTGA | 1 cut(s) | 914 |
| AvaI | CYCGRG | 3 cut(s) | 8, 845, 959 |
| AvaII | GGWCC | 2 cut(s) | 214, 859 |
| BamHI | GGATCC | 1 cut(s) | 1086 |
| BanII | GRGCYC | 1 cut(s) | 15 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 674, 706 |
| BauI | CACGAG | 1 cut(s) | 753 |
| BbrPI | CACGTG | 1 cut(s) | 800 |
| BbsI | GAAGAC | 1 cut(s) | 952 |
| Bbv12I | GWGCWC | 1 cut(s) | 15 |
| BbvI | GCAGC | 1 cut(s) | 111 |
| BccI | CCATC | 7 cut(s) | 172, 307, 334, 355, 606, 888, 1098 |
| BceAI | ACGGC | 3 cut(s) | 214, 283, 570 |
| BciT130I | CCWGG | 1 cut(s) | 218 |
| BclI | TGATCA | 1 cut(s) | 705 |
| BcnI | CCSGG | 3 cut(s) | 68, 960, 961 |
| BcoDI | GTCTC | 2 cut(s) | 35, 834 |
| BfaI | CTAG | 4 cut(s) | 746, 812, 971, 998 |
| BisI | GCNGC | 1 cut(s) | 100 |
| BlsI | GCNGC | 1 cut(s) | 101 |
| Bme1390I | CCNGG | 4 cut(s) | 68, 218, 960, 961 |
| Bme18I | GGWCC | 2 cut(s) | 214, 859 |
| BmeT110I | CYCGRG | 3 cut(s) | 8, 845, 959 |
| BmgT120I | GGNCC | 3 cut(s) | 214, 828, 859 |
| BmiI | GGNNCC | 3 cut(s) | 861, 1003, 1088 |
| BmrFI | CCNGG | 4 cut(s) | 68, 218, 960, 961 |
| BmsI | GCATC | 5 cut(s) | 281, 342, 528, 566, 798 |
| BoxI | GACNNNNGTC | 1 cut(s) | 393 |
| BpiI | GAAGAC | 1 cut(s) | 952 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 34 |
| BpuMI | CCSGG | 3 cut(s) | 68, 960, 961 |
| BsaAI | YACGTR | 1 cut(s) | 800 |
| BsaI | GGTCTC | 1 cut(s) | 834 |
| BsaJI | CCNNGG | 6 cut(s) | 222, 959, 960, 1005, 1082, 1095 |
| BsaWI | WCCGGW | 1 cut(s) | 323 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1021, 1051, 1091, 1121 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 223, 852, 1096 |
| Bse3DI | GCAATG | 1 cut(s) | 585 |
| BseBI | CCWGG | 1 cut(s) | 218 |
| BseDI | CCNNGG | 6 cut(s) | 222, 959, 960, 1005, 1082, 1095 |
| BseGI | GGATG | 9 cut(s) | 120, 318, 322, 366, 598, 615, 899, 970, 1090 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 223, 852, 1096 |
| BseMI | GCAATG | 1 cut(s) | 585 |
| BseMII | CTCAG | 2 cut(s) | 250, 618 |
| BseRI | GAGGAG | 2 cut(s) | 106, 202 |
| BseXI | GCAGC | 1 cut(s) | 111 |
| Bsh1236I | CGCG | 1 cut(s) | 35 |
| BshFI | GGCC | 2 cut(s) | 221, 830 |
| BsiHKAI | GWGCWC | 1 cut(s) | 15 |
| BsiHKCI | CYCGRG | 3 cut(s) | 8, 845, 959 |
| BsiSI | CCGG | 4 cut(s) | 67, 324, 878, 960 |
| BslFI | GGGAC | 4 cut(s) | 302, 559, 914, 942 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 223, 852, 1096 |
| BsmAI | GTCTC | 2 cut(s) | 35, 834 |
| BsmBI | CGTCTC | 1 cut(s) | 35 |
| BsmFI | GGGAC | 4 cut(s) | 302, 559, 914, 942 |
| BsnI | GGCC | 2 cut(s) | 221, 830 |
| Bso31I | GGTCTC | 1 cut(s) | 834 |
| BsoBI | CYCGRG | 3 cut(s) | 8, 845, 959 |
| Bsp1286I | GDGCHC | 1 cut(s) | 15 |
| Bsp143I | GATC | 7 cut(s) | 79, 84, 127, 430, 652, 705, 1086 |
| BspACI | CCGC | 5 cut(s) | 35, 355, 542, 740, 900 |
| BspANI | GGCC | 2 cut(s) | 221, 830 |
| BspCNI | CTCAG | 2 cut(s) | 249, 619 |
| BspFNI | CGCG | 1 cut(s) | 35 |
| BspHI | TCATGA | 1 cut(s) | 87 |
| BspLI | GGNNCC | 3 cut(s) | 861, 1003, 1088 |
| BspPI | GGATC | 4 cut(s) | 87, 135, 1081, 1094 |
| BspQI | GCTCTTC | 1 cut(s) | 20 |
| BspTNI | GGTCTC | 1 cut(s) | 834 |
| BsrBI | CCGCTC | 2 cut(s) | 742, 900 |
| BsrDI | GCAATG | 1 cut(s) | 585 |
| BssECI | CCNNGG | 6 cut(s) | 222, 959, 960, 1005, 1082, 1095 |
| BssMI | GATC | 7 cut(s) | 79, 84, 127, 430, 652, 705, 1086 |
| BssSI | CACGAG | 1 cut(s) | 753 |
| BssT1I | CCWWGG | 3 cut(s) | 1005, 1082, 1095 |
| Bst2BI | CACGAG | 1 cut(s) | 753 |
| Bst2UI | CCWGG | 1 cut(s) | 218 |
| Bst4CI | ACNGT | 3 cut(s) | 49, 425, 981 |
| Bst6I | CTCTTC | 4 cut(s) | 20, 25, 480, 1035 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 382, 676 |
| BstBAI | YACGTR | 1 cut(s) | 800 |
| BstDEI | CTNAG | 3 cut(s) | 228, 236, 627 |
| BstF5I | GGATG | 9 cut(s) | 120, 318, 322, 366, 598, 615, 899, 970, 1090 |
| BstFNI | CGCG | 1 cut(s) | 35 |
| BstKTI | GATC | 7 cut(s) | 82, 87, 130, 433, 655, 708, 1089 |
| BstMAI | GTCTC | 2 cut(s) | 35, 834 |
| BstMBI | GATC | 7 cut(s) | 79, 84, 127, 430, 652, 705, 1086 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 304, 382, 391, 676, 748, 1116 |
| BstNI | CCWGG | 1 cut(s) | 218 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 393 |
| BstSCI | CCNGG | 4 cut(s) | 66, 216, 958, 959 |
| BstUI | CGCG | 1 cut(s) | 35 |
| BstV1I | GCAGC | 1 cut(s) | 111 |
| BstV2I | GAAGAC | 1 cut(s) | 952 |
| BstX2I | RGATCY | 2 cut(s) | 127, 1086 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 145 |
| BstYI | RGATCY | 2 cut(s) | 127, 1086 |
| BsuRI | GGCC | 2 cut(s) | 221, 830 |
| BtgZI | GCGATG | 1 cut(s) | 179 |
| BtsCI | GGATG | 9 cut(s) | 120, 318, 322, 366, 598, 615, 899, 970, 1090 |
| BtsI | GCAGTG | 2 cut(s) | 314, 470 |
| BtsIMutI | CAGTG | 2 cut(s) | 314, 470 |
| CciI | TCATGA | 1 cut(s) | 87 |
| Cfr13I | GGNCC | 3 cut(s) | 214, 828, 859 |
| Cfr9I | CCCGGG | 1 cut(s) | 959 |
| CseI | GACGC | 3 cut(s) | 13, 383, 644 |
| Csp6I | GTAC | 2 cut(s) | 620, 727 |
| CviAII | CATG | 5 cut(s) | 88, 304, 406, 825, 1054 |
| CviQI | GTAC | 2 cut(s) | 620, 727 |
| DdeI | CTNAG | 3 cut(s) | 228, 236, 627 |
| DpnI | GATC | 7 cut(s) | 81, 86, 129, 432, 654, 707, 1088 |
| DpnII | GATC | 7 cut(s) | 79, 84, 127, 430, 652, 705, 1086 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 954 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 954 |
| Eam1104I | CTCTTC | 4 cut(s) | 20, 25, 480, 1035 |
| EarI | CTCTTC | 4 cut(s) | 20, 25, 480, 1035 |
| Ecl136II | GAGCTC | 1 cut(s) | 13 |
| Eco130I | CCWWGG | 3 cut(s) | 1005, 1082, 1095 |
| Eco24I | GRGCYC | 1 cut(s) | 15 |
| Eco31I | GGTCTC | 1 cut(s) | 834 |
| Eco32I | GATATC | 1 cut(s) | 508 |
| Eco47I | GGWCC | 2 cut(s) | 214, 859 |
| Eco53kI | GAGCTC | 1 cut(s) | 13 |
| Eco72I | CACGTG | 1 cut(s) | 800 |
| Eco88I | CYCGRG | 3 cut(s) | 8, 845, 959 |
| EcoICRI | GAGCTC | 1 cut(s) | 13 |
| EcoO109I | RGGNCCY | 1 cut(s) | 859 |
| EcoRI | GAATTC | 1 cut(s) | 869 |
| EcoRII | CCWGG | 1 cut(s) | 216 |
| EcoRV | GATATC | 1 cut(s) | 508 |
| EcoT14I | CCWWGG | 3 cut(s) | 1005, 1082, 1095 |
| EcoT22I | ATGCAT | 1 cut(s) | 826 |
| EcoT38I | GRGCYC | 1 cut(s) | 15 |
| ErhI | CCWWGG | 3 cut(s) | 1005, 1082, 1095 |
| Esp3I | CGTCTC | 1 cut(s) | 35 |
| FaeI | CATG | 5 cut(s) | 91, 307, 409, 828, 1057 |
| FaiI | YATR | 8 cut(s) | 89, 305, 407, 428, 527, 826, 921, 1055 |
| FaqI | GGGAC | 4 cut(s) | 302, 559, 914, 942 |
| FatI | CATG | 5 cut(s) | 87, 303, 405, 824, 1053 |
| FauI | CCCGC | 1 cut(s) | 535 |
| FbaI | TGATCA | 1 cut(s) | 705 |
| Fnu4HI | GCNGC | 1 cut(s) | 100 |
| FokI | GGATG | 9 cut(s) | 127, 325, 329, 373, 585, 622, 906, 977, 1077 |
| FriOI | GRGCYC | 1 cut(s) | 15 |
| Fsp4HI | GCNGC | 1 cut(s) | 100 |
| FspBI | CTAG | 4 cut(s) | 746, 812, 971, 998 |
| GluI | GCNGC | 1 cut(s) | 100 |
| HaeIII | GGCC | 2 cut(s) | 221, 830 |
| HapII | CCGG | 4 cut(s) | 67, 324, 878, 960 |
| HgaI | GACGC | 3 cut(s) | 13, 383, 644 |
| Hin1II | CATG | 5 cut(s) | 91, 307, 409, 828, 1057 |
| HindIII | AAGCTT | 1 cut(s) | 759 |
| HinfI | GANTC | 3 cut(s) | 232, 416, 786 |
| HpaII | CCGG | 4 cut(s) | 67, 324, 878, 960 |
| HphI | GGTGA | 1 cut(s) | 914 |
| Hpy166II | GTNNAC | 2 cut(s) | 214, 1051 |
| Hpy188I | TCNGA | 5 cut(s) | 53, 84, 399, 421, 766 |
| Hpy188III | TCNNGA | 3 cut(s) | 88, 602, 755 |
| Hpy8I | GTNNAC | 2 cut(s) | 214, 1051 |
| Hpy99I | CGWCG | 3 cut(s) | 392, 399, 506 |
| HpyAV | CCTTC | 3 cut(s) | 248, 899, 1055 |
| HpyCH4III | ACNGT | 3 cut(s) | 49, 425, 981 |
| HpyCH4IV | ACGT | 1 cut(s) | 799 |
| HpyCH4V | TGCA | 8 cut(s) | 272, 307, 376, 475, 697, 824, 989, 1110 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 304, 382, 391, 676, 748, 1116 |
| HpyF3I | CTNAG | 3 cut(s) | 228, 236, 627 |
| HpySE526I | ACGT | 1 cut(s) | 799 |
| Hsp92II | CATG | 5 cut(s) | 91, 307, 409, 828, 1057 |
| Ksp22I | TGATCA | 1 cut(s) | 705 |
| Kzo9I | GATC | 7 cut(s) | 79, 84, 127, 430, 652, 705, 1086 |
| LguI | GCTCTTC | 1 cut(s) | 20 |
| LmnI | GCTCC | 3 cut(s) | 262, 747, 897 |
| Lsp1109I | GCAGC | 1 cut(s) | 111 |
| LweI | GCATC | 5 cut(s) | 281, 342, 528, 566, 798 |
| MaeI | CTAG | 4 cut(s) | 746, 812, 971, 998 |
| MaeII | ACGT | 1 cut(s) | 799 |
| MaeIII | GTNAC | 2 cut(s) | 319, 468 |
| MalI | GATC | 7 cut(s) | 81, 86, 129, 432, 654, 707, 1088 |
| MbiI | CCGCTC | 2 cut(s) | 742, 900 |
| MboI | GATC | 7 cut(s) | 79, 84, 127, 430, 652, 705, 1086 |
| MflI | RGATCY | 2 cut(s) | 127, 1086 |
| MhlI | GDGCHC | 1 cut(s) | 15 |
| MluCI | AATT | 2 cut(s) | 688, 869 |
| MlyI | GAGTC | 1 cut(s) | 425 |
| MmeI | TCCRAC | 2 cut(s) | 377, 625 |
| Mph1103I | ATGCAT | 1 cut(s) | 826 |
| MseI | TTAA | 3 cut(s) | 438, 819, 1136 |
| MslI | CAYNNNNRTG | 1 cut(s) | 524 |
| MspI | CCGG | 4 cut(s) | 67, 324, 878, 960 |
| MspR9I | CCNGG | 4 cut(s) | 68, 218, 960, 961 |
| MvaI | CCWGG | 1 cut(s) | 218 |
| MvnI | CGCG | 1 cut(s) | 35 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 304, 382, 391, 676, 748, 1116 |
| NciI | CCSGG | 3 cut(s) | 68, 960, 961 |
| NdeII | GATC | 7 cut(s) | 79, 84, 127, 430, 652, 705, 1086 |
| NlaIII | CATG | 5 cut(s) | 91, 307, 409, 828, 1057 |
| NlaIV | GGNNCC | 3 cut(s) | 861, 1003, 1088 |
| NmeAIII | GCCGAG | 1 cut(s) | 247 |
| NmuCI | GTSAC | 1 cut(s) | 468 |
| NsiI | ATGCAT | 1 cut(s) | 826 |
| PaeR7I | CTCGAG | 1 cut(s) | 8 |
| PagI | TCATGA | 1 cut(s) | 87 |
| PciSI | GCTCTTC | 1 cut(s) | 20 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 161, 560 |
| PfeI | GAWTC | 2 cut(s) | 232, 786 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1096 |
| PkrI | GCNGC | 1 cut(s) | 101 |
| PleI | GAGTC | 1 cut(s) | 424 |
| PmaCI | CACGTG | 1 cut(s) | 800 |
| PmlI | CACGTG | 1 cut(s) | 800 |
| PpsI | GAGTC | 1 cut(s) | 424 |
| Ppu21I | YACGTR | 1 cut(s) | 800 |
| PpuMI | RGGWCCY | 1 cut(s) | 859 |
| PshAI | GACNNNNGTC | 1 cut(s) | 393 |
| PshBI | ATTAAT | 1 cut(s) | 819 |
| Psp124BI | GAGCTC | 1 cut(s) | 15 |
| Psp5II | RGGWCCY | 1 cut(s) | 859 |
| Psp6I | CCWGG | 1 cut(s) | 216 |
| PspCI | CACGTG | 1 cut(s) | 800 |
| PspGI | CCWGG | 1 cut(s) | 216 |
| PspN4I | GGNNCC | 3 cut(s) | 861, 1003, 1088 |
| PspPI | GGNCC | 3 cut(s) | 214, 828, 859 |
| PspPPI | RGGWCCY | 1 cut(s) | 859 |
| PspXI | VCTCGAGB | 1 cut(s) | 8 |
| PsuI | RGATCY | 2 cut(s) | 127, 1086 |
| RsaI | GTAC | 2 cut(s) | 621, 728 |
| RsaNI | GTAC | 2 cut(s) | 620, 727 |
| RseI | CAYNNNNRTG | 1 cut(s) | 524 |
| SacI | GAGCTC | 1 cut(s) | 15 |
| SapI | GCTCTTC | 1 cut(s) | 20 |
| SaqAI | TTAA | 3 cut(s) | 438, 819, 1136 |
| SatI | GCNGC | 1 cut(s) | 100 |
| Sau3AI | GATC | 7 cut(s) | 79, 84, 127, 430, 652, 705, 1086 |
| Sau96I | GGNCC | 3 cut(s) | 214, 828, 859 |
| SchI | GAGTC | 1 cut(s) | 425 |
| ScrFI | CCNGG | 4 cut(s) | 68, 218, 960, 961 |
| SduI | GDGCHC | 1 cut(s) | 15 |
| SfaNI | GCATC | 5 cut(s) | 281, 342, 528, 566, 798 |
| Sfr274I | CTCGAG | 1 cut(s) | 8 |
| SinI | GGWCC | 2 cut(s) | 214, 859 |
| SlaI | CTCGAG | 1 cut(s) | 8 |
| SmaI | CCCGGG | 1 cut(s) | 961 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 524 |
| SmlI | CTYRAG | 1 cut(s) | 8 |
| SmoI | CTYRAG | 1 cut(s) | 8 |
| Sse9I | AATT | 2 cut(s) | 688, 869 |
| SsiI | CCGC | 5 cut(s) | 35, 355, 542, 740, 900 |
| SspMI | CTAG | 4 cut(s) | 746, 812, 971, 998 |
| SstI | GAGCTC | 1 cut(s) | 15 |
| StyD4I | CCNGG | 4 cut(s) | 66, 216, 958, 959 |
| StyI | CCWWGG | 3 cut(s) | 1005, 1082, 1095 |
| TaaI | ACNGT | 3 cut(s) | 49, 425, 981 |
| TaiI | ACGT | 1 cut(s) | 802 |
| TaqI | TCGA | 5 cut(s) | 9, 275, 387, 414, 789 |
| TasI | AATT | 2 cut(s) | 688, 869 |
| TfiI | GAWTC | 2 cut(s) | 232, 786 |
| Tru1I | TTAA | 3 cut(s) | 438, 819, 1136 |
| Tru9I | TTAA | 3 cut(s) | 438, 819, 1136 |
| TscAI | CASTG | 2 cut(s) | 314, 477 |
| TseFI | GTSAC | 1 cut(s) | 468 |
| TseI | GCWGC | 1 cut(s) | 99 |
| Tsp45I | GTSAC | 1 cut(s) | 468 |
| TspDTI | ATGAA | 2 cut(s) | 292, 626 |
| TspGWI | ACGGA | 1 cut(s) | 725 |
| TspMI | CCCGGG | 1 cut(s) | 959 |
| TspRI | CASTG | 2 cut(s) | 314, 477 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1096 |
| VpaK11BI | GGWCC | 2 cut(s) | 214, 859 |
| VspI | ATTAAT | 1 cut(s) | 819 |
| XapI | RAATTY | 1 cut(s) | 869 |
| XhoI | CTCGAG | 1 cut(s) | 8 |
| XmaI | CCCGGG | 1 cut(s) | 959 |
| XspI | CTAG | 4 cut(s) | 746, 812, 971, 998 |
| Zsp2I | ATGCAT | 1 cut(s) | 826 |