ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 104 |
| AccII | CGCG | 3 cut(s) | 157, 515, 524 |
| AciI | CCGC | 3 cut(s) | 104, 370, 515 |
| AcoI | YGGCCR | 2 cut(s) | 126, 538 |
| AcsI | RAATTY | 2 cut(s) | 217, 297 |
| AcuI | CTGAAG | 1 cut(s) | 171 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 166 |
| AgsI | TTSAA | 7 cut(s) | 34, 46, 140, 212, 386, 500, 552 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 107, 139 |
| AluBI | AGCT | 5 cut(s) | 28, 179, 276, 437, 623 |
| AluI | AGCT | 5 cut(s) | 28, 179, 276, 437, 623 |
| Alw21I | GWGCWC | 2 cut(s) | 310, 632 |
| Alw26I | GTCTC | 1 cut(s) | 461 |
| AoxI | GGCC | 2 cut(s) | 126, 538 |
| ApoI | RAATTY | 2 cut(s) | 217, 297 |
| AseI | ATTAAT | 2 cut(s) | 60, 603 |
| AspLEI | GCGC | 4 cut(s) | 157, 159, 445, 526 |
| AsuC2I | CCSGG | 1 cut(s) | 584 |
| BalI | TGGCCA | 2 cut(s) | 128, 540 |
| BbsI | GAAGAC | 2 cut(s) | 58, 602 |
| Bbv12I | GWGCWC | 2 cut(s) | 310, 632 |
| BccI | CCATC | 2 cut(s) | 179, 240 |
| BceAI | ACGGC | 1 cut(s) | 144 |
| BcnI | CCSGG | 1 cut(s) | 584 |
| BcoDI | GTCTC | 1 cut(s) | 461 |
| BfaI | CTAG | 1 cut(s) | 470 |
| BisI | GCNGC | 1 cut(s) | 516 |
| BlsI | GCNGC | 1 cut(s) | 517 |
| Bme1390I | CCNGG | 1 cut(s) | 584 |
| BmiI | GGNNCC | 2 cut(s) | 374, 482 |
| BmrFI | CCNGG | 1 cut(s) | 584 |
| BpiI | GAAGAC | 2 cut(s) | 58, 602 |
| Bpu10I | CCTNAGC | 1 cut(s) | 446 |
| BpuEI | CTTGAG | 1 cut(s) | 131 |
| BpuMI | CCSGG | 1 cut(s) | 584 |
| Bsa29I | ATCGAT | 1 cut(s) | 206 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 166 |
| Bse1I | ACTGG | 1 cut(s) | 544 |
| BseCI | ATCGAT | 1 cut(s) | 206 |
| BseGI | GGATG | 2 cut(s) | 358, 415 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 166 |
| BseMII | CTCAG | 1 cut(s) | 460 |
| BseNI | ACTGG | 1 cut(s) | 544 |
| BsePI | GCGCGC | 1 cut(s) | 155 |
| BseRI | GAGGAG | 1 cut(s) | 449 |
| BseYI | CCCAGC | 1 cut(s) | 623 |
| Bsh1236I | CGCG | 3 cut(s) | 157, 515, 524 |
| BshFI | GGCC | 2 cut(s) | 128, 540 |
| BshVI | ATCGAT | 1 cut(s) | 206 |
| BsiHKAI | GWGCWC | 2 cut(s) | 310, 632 |
| BsiSI | CCGG | 1 cut(s) | 584 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 166 |
| BsmAI | GTCTC | 1 cut(s) | 461 |
| BsnI | GGCC | 2 cut(s) | 128, 540 |
| Bsp1286I | GDGCHC | 2 cut(s) | 310, 632 |
| BspACI | CCGC | 3 cut(s) | 104, 370, 515 |
| BspANI | GGCC | 2 cut(s) | 128, 540 |
| BspCNI | CTCAG | 1 cut(s) | 459 |
| BspDI | ATCGAT | 1 cut(s) | 206 |
| BspFNI | CGCG | 3 cut(s) | 157, 515, 524 |
| BspHI | TCATGA | 1 cut(s) | 181 |
| BspLI | GGNNCC | 2 cut(s) | 374, 482 |
| BsrBI | CCGCTC | 1 cut(s) | 104 |
| BsrI | ACTGG | 1 cut(s) | 544 |
| BssHII | GCGCGC | 1 cut(s) | 155 |
| Bst6I | CTCTTC | 1 cut(s) | 495 |
| BstC8I | GCNNGC | 2 cut(s) | 157, 528 |
| BstDEI | CTNAG | 1 cut(s) | 446 |
| BstF5I | GGATG | 2 cut(s) | 358, 415 |
| BstFNI | CGCG | 3 cut(s) | 157, 515, 524 |
| BstHHI | GCGC | 4 cut(s) | 157, 159, 445, 526 |
| BstMAI | GTCTC | 1 cut(s) | 461 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 512, 521 |
| BstSCI | CCNGG | 1 cut(s) | 582 |
| BstUI | CGCG | 3 cut(s) | 157, 515, 524 |
| BstV2I | GAAGAC | 2 cut(s) | 58, 602 |
| Bsu15I | ATCGAT | 1 cut(s) | 206 |
| BsuRI | GGCC | 2 cut(s) | 128, 540 |
| BsuTUI | ATCGAT | 1 cut(s) | 206 |
| BtsCI | GGATG | 2 cut(s) | 358, 415 |
| BtsI | GCAGTG | 1 cut(s) | 462 |
| BtsIMutI | CAGTG | 1 cut(s) | 462 |
| Cac8I | GCNNGC | 2 cut(s) | 157, 528 |
| CciI | TCATGA | 1 cut(s) | 181 |
| CfoI | GCGC | 4 cut(s) | 157, 159, 445, 526 |
| ClaI | ATCGAT | 1 cut(s) | 206 |
| CviAII | CATG | 2 cut(s) | 182, 377 |
| DdeI | CTNAG | 1 cut(s) | 446 |
| DraI | TTTAAA | 1 cut(s) | 619 |
| EaeI | YGGCCR | 2 cut(s) | 126, 538 |
| Eam1104I | CTCTTC | 1 cut(s) | 495 |
| EarI | CTCTTC | 1 cut(s) | 495 |
| Eco57I | CTGAAG | 1 cut(s) | 171 |
| FaeI | CATG | 2 cut(s) | 185, 380 |
| FaiI | YATR | 6 cut(s) | 81, 131, 183, 285, 378, 407 |
| FatI | CATG | 2 cut(s) | 181, 376 |
| Fnu4HI | GCNGC | 1 cut(s) | 516 |
| FokI | GGATG | 2 cut(s) | 365, 422 |
| Fsp4HI | GCNGC | 1 cut(s) | 516 |
| FspBI | CTAG | 1 cut(s) | 470 |
| GlaI | GCGC | 4 cut(s) | 156, 158, 444, 525 |
| GluI | GCNGC | 1 cut(s) | 516 |
| GsaI | CCCAGC | 1 cut(s) | 627 |
| HaeIII | GGCC | 2 cut(s) | 128, 540 |
| HapII | CCGG | 1 cut(s) | 584 |
| HhaI | GCGC | 4 cut(s) | 157, 159, 445, 526 |
| Hin1II | CATG | 2 cut(s) | 185, 380 |
| Hin6I | GCGC | 4 cut(s) | 155, 157, 443, 524 |
| HinP1I | GCGC | 4 cut(s) | 155, 157, 443, 524 |
| HincII | GTYRAC | 1 cut(s) | 361 |
| HindII | GTYRAC | 1 cut(s) | 361 |
| HindIII | AAGCTT | 1 cut(s) | 26 |
| HinfI | GANTC | 3 cut(s) | 208, 487, 569 |
| HpaI | GTTAAC | 1 cut(s) | 361 |
| HpaII | CCGG | 1 cut(s) | 584 |
| Hpy166II | GTNNAC | 1 cut(s) | 361 |
| Hpy188III | TCNNGA | 9 cut(s) | 52, 110, 137, 182, 212, 425, 470, 484, 633 |
| Hpy8I | GTNNAC | 1 cut(s) | 361 |
| HpyAV | CCTTC | 4 cut(s) | 13, 40, 134, 251 |
| HpyCH4IV | ACGT | 1 cut(s) | 310 |
| HpyCH4V | TGCA | 3 cut(s) | 13, 98, 333 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 512, 521 |
| HpyF3I | CTNAG | 1 cut(s) | 446 |
| HpySE526I | ACGT | 1 cut(s) | 310 |
| Hsp92II | CATG | 2 cut(s) | 185, 380 |
| HspAI | GCGC | 4 cut(s) | 155, 157, 443, 524 |
| KspAI | GTTAAC | 1 cut(s) | 361 |
| LmnI | GCTCC | 2 cut(s) | 372, 635 |
| LpnPI | CCDG | 8 cut(s) | 37, 208, 433, 497, 557, 558, 597, 609 |
| MaeI | CTAG | 1 cut(s) | 470 |
| MaeII | ACGT | 1 cut(s) | 310 |
| MbiI | CCGCTC | 1 cut(s) | 104 |
| MboII | GAAGA | 3 cut(s) | 58, 512, 607 |
| MfeI | CAATTG | 1 cut(s) | 122 |
| MhlI | GDGCHC | 2 cut(s) | 310, 632 |
| MlsI | TGGCCA | 2 cut(s) | 128, 540 |
| MluCI | AATT | 5 cut(s) | 39, 122, 217, 297, 604 |
| MluNI | TGGCCA | 2 cut(s) | 128, 540 |
| MnlI | CCTC | 5 cut(s) | 160, 470, 471, 496, 623 |
| Mox20I | TGGCCA | 2 cut(s) | 128, 540 |
| MscI | TGGCCA | 2 cut(s) | 128, 540 |
| MseI | TTAA | 5 cut(s) | 60, 252, 360, 603, 618 |
| MslI | CAYNNNNRTG | 1 cut(s) | 84 |
| Msp20I | TGGCCA | 2 cut(s) | 128, 540 |
| MspI | CCGG | 1 cut(s) | 584 |
| MspR9I | CCNGG | 1 cut(s) | 584 |
| MunI | CAATTG | 1 cut(s) | 122 |
| MvnI | CGCG | 3 cut(s) | 157, 515, 524 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 512, 521 |
| NciI | CCSGG | 1 cut(s) | 584 |
| NlaIII | CATG | 2 cut(s) | 185, 380 |
| NlaIV | GGNNCC | 2 cut(s) | 374, 482 |
| PagI | TCATGA | 1 cut(s) | 181 |
| PauI | GCGCGC | 1 cut(s) | 155 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 307 |
| PfeI | GAWTC | 3 cut(s) | 208, 487, 569 |
| PkrI | GCNGC | 1 cut(s) | 517 |
| PshBI | ATTAAT | 2 cut(s) | 60, 603 |
| PspFI | CCCAGC | 1 cut(s) | 623 |
| PspN4I | GGNNCC | 2 cut(s) | 374, 482 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 295, 327 |
| PteI | GCGCGC | 1 cut(s) | 155 |
| RseI | CAYNNNNRTG | 1 cut(s) | 84 |
| SaqAI | TTAA | 5 cut(s) | 60, 252, 360, 603, 618 |
| SatI | GCNGC | 1 cut(s) | 516 |
| ScrFI | CCNGG | 1 cut(s) | 584 |
| SduI | GDGCHC | 2 cut(s) | 310, 632 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 84 |
| SmlI | CTYRAG | 1 cut(s) | 110 |
| SmoI | CTYRAG | 1 cut(s) | 110 |
| Sse9I | AATT | 5 cut(s) | 39, 122, 217, 297, 604 |
| SsiI | CCGC | 3 cut(s) | 104, 370, 515 |
| SspI | AATATT | 2 cut(s) | 58, 421 |
| SspMI | CTAG | 1 cut(s) | 470 |
| StyD4I | CCNGG | 1 cut(s) | 582 |
| TaiI | ACGT | 1 cut(s) | 313 |
| TaqI | TCGA | 1 cut(s) | 206 |
| TasI | AATT | 5 cut(s) | 39, 122, 217, 297, 604 |
| TauI | GCSGC | 1 cut(s) | 518 |
| TfiI | GAWTC | 3 cut(s) | 208, 487, 569 |
| Tru1I | TTAA | 5 cut(s) | 60, 252, 360, 603, 618 |
| Tru9I | TTAA | 5 cut(s) | 60, 252, 360, 603, 618 |
| TscAI | CASTG | 1 cut(s) | 469 |
| TspDTI | ATGAA | 3 cut(s) | 68, 272, 303 |
| TspRI | CASTG | 1 cut(s) | 469 |
| VspI | ATTAAT | 2 cut(s) | 60, 603 |
| XapI | RAATTY | 2 cut(s) | 217, 297 |
| XbaI | TCTAGA | 1 cut(s) | 469 |
| XspI | CTAG | 1 cut(s) | 470 |