Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 283 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 367 |
| AcsI | RAATTY | 2 cut(s) | 238, 349 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 367 |
| AgsI | TTSAA | 3 cut(s) | 163, 217, 387 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 42 |
| AhlI | ACTAGT | 1 cut(s) | 29 |
| AjnI | CCWGG | 1 cut(s) | 360 |
| AluBI | AGCT | 2 cut(s) | 275, 455 |
| AluI | AGCT | 2 cut(s) | 275, 455 |
| Alw21I | GWGCWC | 1 cut(s) | 463 |
| Alw44I | GTGCAC | 1 cut(s) | 459 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 367 |
| AoxI | GGCC | 1 cut(s) | 412 |
| ApaLI | GTGCAC | 1 cut(s) | 459 |
| ApeKI | GCWGC | 2 cut(s) | 101, 284 |
| ApoI | RAATTY | 2 cut(s) | 238, 349 |
| AspLEI | GCGC | 1 cut(s) | 360 |
| AspS9I | GGNCC | 1 cut(s) | 412 |
| AsuC2I | CCSGG | 1 cut(s) | 106 |
| AsuHPI | GGTGA | 3 cut(s) | 136, 247, 407 |
| BaeGI | GKGCMC | 1 cut(s) | 463 |
| Bbv12I | GWGCWC | 1 cut(s) | 463 |
| BbvI | GCAGC | 2 cut(s) | 88, 271 |
| BccI | CCATC | 1 cut(s) | 88 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 80, 114 |
| BciT130I | CCWGG | 1 cut(s) | 362 |
| BcnI | CCSGG | 1 cut(s) | 106 |
| BcuI | ACTAGT | 1 cut(s) | 29 |
| BfaI | CTAG | 2 cut(s) | 30, 372 |
| BfuAI | ACCTGC | 1 cut(s) | 283 |
| BisI | GCNGC | 2 cut(s) | 102, 285 |
| BlsI | GCNGC | 2 cut(s) | 103, 286 |
| Bme1390I | CCNGG | 2 cut(s) | 106, 362 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 42 |
| BmgT120I | GGNCC | 1 cut(s) | 412 |
| BmrFI | CCNGG | 2 cut(s) | 106, 362 |
| BmsI | GCATC | 2 cut(s) | 157, 271 |
| BpuEI | CTTGAG | 1 cut(s) | 26 |
| BpuMI | CCSGG | 1 cut(s) | 106 |
| BsaJI | CCNNGG | 1 cut(s) | 361 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 367 |
| Bse1I | ACTGG | 1 cut(s) | 372 |
| BseBI | CCWGG | 1 cut(s) | 362 |
| BseDI | CCNNGG | 1 cut(s) | 361 |
| BseGI | GGATG | 1 cut(s) | 172 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 367 |
| BseNI | ACTGG | 1 cut(s) | 372 |
| BseRI | GAGGAG | 1 cut(s) | 67 |
| BseSI | GKGCMC | 1 cut(s) | 463 |
| BseXI | GCAGC | 2 cut(s) | 88, 271 |
| BshFI | GGCC | 1 cut(s) | 414 |
| BsiHKAI | GWGCWC | 1 cut(s) | 463 |
| BsiSI | CCGG | 1 cut(s) | 105 |
| BslFI | GGGAC | 1 cut(s) | 378 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 367 |
| BsmFI | GGGAC | 1 cut(s) | 378 |
| BsnI | GGCC | 1 cut(s) | 414 |
| Bsp1286I | GDGCHC | 1 cut(s) | 463 |
| BspANI | GGCC | 1 cut(s) | 414 |
| BspMI | ACCTGC | 1 cut(s) | 283 |
| BsrI | ACTGG | 1 cut(s) | 372 |
| BssECI | CCNNGG | 1 cut(s) | 361 |
| Bst2UI | CCWGG | 1 cut(s) | 362 |
| Bst4CI | ACNGT | 1 cut(s) | 19 |
| Bst6I | CTCTTC | 1 cut(s) | 212 |
| BstDEI | CTNAG | 1 cut(s) | 416 |
| BstEII | GGTNACC | 1 cut(s) | 430 |
| BstF5I | GGATG | 1 cut(s) | 172 |
| BstHHI | GCGC | 1 cut(s) | 360 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 281, 377, 452 |
| BstNI | CCWGG | 1 cut(s) | 362 |
| BstPI | GGTNACC | 1 cut(s) | 430 |
| BstSCI | CCNGG | 2 cut(s) | 104, 360 |
| BstSLI | GKGCMC | 1 cut(s) | 463 |
| BstV1I | GCAGC | 2 cut(s) | 88, 271 |
| BsuRI | GGCC | 1 cut(s) | 414 |
| BtsCI | GGATG | 1 cut(s) | 172 |
| BveI | ACCTGC | 1 cut(s) | 283 |
| CaiI | CAGNNNCTG | 1 cut(s) | 367 |
| CfoI | GCGC | 1 cut(s) | 360 |
| Cfr13I | GGNCC | 1 cut(s) | 412 |
| CseI | GACGC | 1 cut(s) | 127 |
| CviAII | CATG | 3 cut(s) | 47, 391, 436 |
| CviJI | RGCY | 6 cut(s) | 74, 115, 275, 371, 414, 455 |
| CviKI_1 | RGCY | 6 cut(s) | 74, 115, 275, 371, 414, 455 |
| DdeI | CTNAG | 1 cut(s) | 416 |
| DriI | GACNNNNNGTC | 1 cut(s) | 42 |
| Eam1104I | CTCTTC | 1 cut(s) | 212 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 42 |
| EarI | CTCTTC | 1 cut(s) | 212 |
| Eco91I | GGTNACC | 1 cut(s) | 430 |
| EcoO109I | RGGNCCY | 1 cut(s) | 412 |
| EcoO65I | GGTNACC | 1 cut(s) | 430 |
| EcoRI | GAATTC | 1 cut(s) | 238 |
| EcoRII | CCWGG | 1 cut(s) | 360 |
| FaeI | CATG | 3 cut(s) | 50, 394, 439 |
| FaiI | YATR | 9 cut(s) | 48, 62, 227, 233, 257, 261, 263, 392, 437 |
| FaqI | GGGAC | 1 cut(s) | 378 |
| FatI | CATG | 3 cut(s) | 46, 390, 435 |
| Fnu4HI | GCNGC | 2 cut(s) | 102, 285 |
| FokI | GGATG | 1 cut(s) | 179 |
| Fsp4HI | GCNGC | 2 cut(s) | 102, 285 |
| FspBI | CTAG | 2 cut(s) | 30, 372 |
| GlaI | GCGC | 1 cut(s) | 359 |
| GluI | GCNGC | 2 cut(s) | 102, 285 |
| HaeIII | GGCC | 1 cut(s) | 414 |
| HapII | CCGG | 1 cut(s) | 105 |
| HgaI | GACGC | 1 cut(s) | 127 |
| HhaI | GCGC | 1 cut(s) | 360 |
| Hin1II | CATG | 3 cut(s) | 50, 394, 439 |
| Hin6I | GCGC | 1 cut(s) | 358 |
| HinP1I | GCGC | 1 cut(s) | 358 |
| HpaII | CCGG | 1 cut(s) | 105 |
| HphI | GGTGA | 3 cut(s) | 136, 247, 407 |
| Hpy166II | GTNNAC | 2 cut(s) | 27, 461 |
| Hpy188III | TCNNGA | 1 cut(s) | 91 |
| Hpy8I | GTNNAC | 2 cut(s) | 27, 461 |
| HpyAV | CCTTC | 1 cut(s) | 157 |
| HpyCH4III | ACNGT | 1 cut(s) | 19 |
| HpyCH4V | TGCA | 4 cut(s) | 155, 287, 446, 461 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 281, 377, 452 |
| HpyF3I | CTNAG | 1 cut(s) | 416 |
| Hsp92II | CATG | 3 cut(s) | 50, 394, 439 |
| HspAI | GCGC | 1 cut(s) | 358 |
| LmnI | GCTCC | 1 cut(s) | 272 |
| LpnPI | CCDG | 6 cut(s) | 118, 278, 347, 353, 374, 395 |
| Lsp1109I | GCAGC | 2 cut(s) | 88, 271 |
| LweI | GCATC | 2 cut(s) | 157, 271 |
| MaeI | CTAG | 2 cut(s) | 30, 372 |
| MaeIII | GTNAC | 2 cut(s) | 124, 430 |
| MboII | GAAGA | 1 cut(s) | 229 |
| MhlI | GDGCHC | 1 cut(s) | 463 |
| MluCI | AATT | 4 cut(s) | 118, 238, 349, 447 |
| MnlI | CCTC | 4 cut(s) | 45, 48, 64, 177 |
| MseI | TTAA | 1 cut(s) | 111 |
| MspI | CCGG | 1 cut(s) | 105 |
| MspR9I | CCNGG | 2 cut(s) | 106, 362 |
| MvaI | CCWGG | 1 cut(s) | 362 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 281, 377, 452 |
| NciI | CCSGG | 1 cut(s) | 106 |
| NlaIII | CATG | 3 cut(s) | 50, 394, 439 |
| NmuCI | GTSAC | 1 cut(s) | 124 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 179 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 367 |
| PkrI | GCNGC | 2 cut(s) | 103, 286 |
| Psp6I | CCWGG | 1 cut(s) | 360 |
| PspEI | GGTNACC | 1 cut(s) | 430 |
| PspGI | CCWGG | 1 cut(s) | 360 |
| PspPI | GGNCC | 1 cut(s) | 412 |
| PstNI | CAGNNNCTG | 1 cut(s) | 367 |
| SaqAI | TTAA | 1 cut(s) | 111 |
| SatI | GCNGC | 2 cut(s) | 102, 285 |
| Sau96I | GGNCC | 1 cut(s) | 412 |
| ScrFI | CCNGG | 2 cut(s) | 106, 362 |
| SduI | GDGCHC | 1 cut(s) | 463 |
| SetI | ASST | 4 cut(s) | 277, 297, 432, 457 |
| SfaNI | GCATC | 2 cut(s) | 157, 271 |
| SmlI | CTYRAG | 1 cut(s) | 5 |
| SmoI | CTYRAG | 1 cut(s) | 5 |
| SpeI | ACTAGT | 1 cut(s) | 29 |
| Sse9I | AATT | 4 cut(s) | 118, 238, 349, 447 |
| SspMI | CTAG | 2 cut(s) | 30, 372 |
| StyD4I | CCNGG | 2 cut(s) | 104, 360 |
| TaaI | ACNGT | 1 cut(s) | 19 |
| TaqI | TCGA | 1 cut(s) | 90 |
| TasI | AATT | 4 cut(s) | 118, 238, 349, 447 |
| Tru1I | TTAA | 1 cut(s) | 111 |
| Tru9I | TTAA | 1 cut(s) | 111 |
| TseFI | GTSAC | 1 cut(s) | 124 |
| TseI | GCWGC | 2 cut(s) | 101, 284 |
| Tsp45I | GTSAC | 1 cut(s) | 124 |
| TspDTI | ATGAA | 1 cut(s) | 278 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 367 |
| VneI | GTGCAC | 1 cut(s) | 459 |
| XapI | RAATTY | 2 cut(s) | 238, 349 |
| XspI | CTAG | 2 cut(s) | 30, 372 |