ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Snf7 | PF03357 | 17 - 186 | 3e-48 | Snf7 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 231 |
| AccB1I | GGYRCC | 1 cut(s) | 210 |
| AciI | CCGC | 2 cut(s) | 33, 46 |
| AclWI | GGATC | 2 cut(s) | 96, 109 |
| AcsI | RAATTY | 1 cut(s) | 383 |
| AgsI | TTSAA | 2 cut(s) | 134, 221 |
| AjnI | CCWGG | 1 cut(s) | 249 |
| AluBI | AGCT | 5 cut(s) | 173, 235, 535, 572, 605 |
| AluI | AGCT | 5 cut(s) | 173, 235, 535, 572, 605 |
| AlwI | GGATC | 2 cut(s) | 96, 109 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 277, 557 |
| AoxI | GGCC | 1 cut(s) | 331 |
| ApeKI | GCWGC | 4 cut(s) | 563, 572, 602, 605 |
| ApoI | RAATTY | 1 cut(s) | 383 |
| AspLEI | GCGC | 2 cut(s) | 24, 547 |
| AspS9I | GGNCC | 1 cut(s) | 331 |
| AsuHPI | GGTGA | 2 cut(s) | 328, 436 |
| AsuII | TTCGAA | 1 cut(s) | 202 |
| BamHI | GGATCC | 1 cut(s) | 101 |
| BanI | GGYRCC | 1 cut(s) | 210 |
| BbvI | GCAGC | 4 cut(s) | 550, 559, 592, 614 |
| BccI | CCATC | 7 cut(s) | 160, 289, 367, 400, 421, 556, 611 |
| BceAI | ACGGC | 1 cut(s) | 224 |
| BciT130I | CCWGG | 1 cut(s) | 251 |
| BfaI | CTAG | 2 cut(s) | 488, 650 |
| BfmI | CTRYAG | 1 cut(s) | 365 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 560 |
| BisI | GCNGC | 4 cut(s) | 564, 573, 603, 606 |
| BlpI | GCTNAGC | 1 cut(s) | 153 |
| BlsI | GCNGC | 4 cut(s) | 565, 574, 604, 607 |
| Bme1390I | CCNGG | 1 cut(s) | 251 |
| BmgT120I | GGNCC | 1 cut(s) | 331 |
| BmiI | GGNNCC | 2 cut(s) | 103, 212 |
| BmrFI | CCNGG | 1 cut(s) | 251 |
| BmsI | GCATC | 2 cut(s) | 424, 436 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 90, 122 |
| BpmI | CTGGAG | 2 cut(s) | 92, 233 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 153 |
| Bpu14I | TTCGAA | 1 cut(s) | 202 |
| BpuEI | CTTGAG | 2 cut(s) | 221, 273 |
| BsaJI | CCNNGG | 1 cut(s) | 250 |
| Bse3DI | GCAATG | 2 cut(s) | 312, 333 |
| BseBI | CCWGG | 1 cut(s) | 251 |
| BseDI | CCNNGG | 1 cut(s) | 250 |
| BseGI | GGATG | 1 cut(s) | 672 |
| BseMI | GCAATG | 2 cut(s) | 312, 333 |
| BseMII | CTCAG | 2 cut(s) | 277, 411 |
| BseRI | GAGGAG | 1 cut(s) | 485 |
| BseXI | GCAGC | 4 cut(s) | 550, 559, 592, 614 |
| BsgI | GTGCAG | 1 cut(s) | 549 |
| BshFI | GGCC | 1 cut(s) | 333 |
| BshNI | GGYRCC | 1 cut(s) | 210 |
| BsmI | GAATGC | 1 cut(s) | 66 |
| BsnI | GGCC | 1 cut(s) | 333 |
| Bsp119I | TTCGAA | 1 cut(s) | 202 |
| Bsp143I | GATC | 1 cut(s) | 101 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 153 |
| BspACI | CCGC | 2 cut(s) | 33, 46 |
| BspANI | GGCC | 1 cut(s) | 333 |
| BspCNI | CTCAG | 2 cut(s) | 276, 412 |
| BspLI | GGNNCC | 2 cut(s) | 103, 212 |
| BspMAI | CTGCAG | 1 cut(s) | 369 |
| BspPI | GGATC | 2 cut(s) | 96, 109 |
| BspT104I | TTCGAA | 1 cut(s) | 202 |
| BspT107I | GGYRCC | 1 cut(s) | 210 |
| BsrDI | GCAATG | 2 cut(s) | 312, 333 |
| BssECI | CCNNGG | 1 cut(s) | 250 |
| BssMI | GATC | 1 cut(s) | 101 |
| Bst2UI | CCWGG | 1 cut(s) | 251 |
| Bst4CI | ACNGT | 1 cut(s) | 523 |
| Bst6I | CTCTTC | 2 cut(s) | 140, 462 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 572 |
| BstBI | TTCGAA | 1 cut(s) | 202 |
| BstC8I | GCNNGC | 1 cut(s) | 20 |
| BstDEI | CTNAG | 3 cut(s) | 153, 263, 420 |
| BstF5I | GGATG | 1 cut(s) | 672 |
| BstHHI | GCGC | 2 cut(s) | 24, 547 |
| BstKTI | GATC | 1 cut(s) | 104 |
| BstMBI | GATC | 1 cut(s) | 101 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 364, 551, 560, 569, 572 |
| BstNI | CCWGG | 1 cut(s) | 251 |
| BstSCI | CCNGG | 1 cut(s) | 249 |
| BstSFI | CTRYAG | 1 cut(s) | 365 |
| BstV1I | GCAGC | 4 cut(s) | 550, 559, 592, 614 |
| BstX2I | RGATCY | 1 cut(s) | 101 |
| BstYI | RGATCY | 1 cut(s) | 101 |
| BsuRI | GGCC | 1 cut(s) | 333 |
| BtgZI | GCGATG | 1 cut(s) | 308 |
| BtsCI | GGATG | 1 cut(s) | 672 |
| BtsI | GCAGTG | 1 cut(s) | 362 |
| BtsIMutI | CAGTG | 2 cut(s) | 275, 362 |
| Cac8I | GCNNGC | 1 cut(s) | 20 |
| CaiI | CAGNNNCTG | 2 cut(s) | 277, 557 |
| CfoI | GCGC | 2 cut(s) | 24, 547 |
| Cfr13I | GGNCC | 1 cut(s) | 331 |
| CseI | GACGC | 1 cut(s) | 121 |
| CviJI | RGCY | 9 cut(s) | 173, 235, 333, 535, 554, 563, 572, 605, 649 |
| CviKI_1 | RGCY | 9 cut(s) | 173, 235, 333, 535, 554, 563, 572, 605, 649 |
| DdeI | CTNAG | 3 cut(s) | 153, 263, 420 |
| DpnI | GATC | 1 cut(s) | 103 |
| DpnII | GATC | 1 cut(s) | 101 |
| Eam1104I | CTCTTC | 2 cut(s) | 140, 462 |
| EarI | CTCTTC | 2 cut(s) | 140, 462 |
| EcoRII | CCWGG | 1 cut(s) | 249 |
| FaiI | YATR | 4 cut(s) | 185, 231, 377, 518 |
| FauI | CCCGC | 2 cut(s) | 39, 40 |
| Fnu4HI | GCNGC | 4 cut(s) | 564, 573, 603, 606 |
| Fsp4HI | GCNGC | 4 cut(s) | 564, 573, 603, 606 |
| FspBI | CTAG | 2 cut(s) | 488, 650 |
| GlaI | GCGC | 2 cut(s) | 23, 546 |
| GluI | GCNGC | 4 cut(s) | 564, 573, 603, 606 |
| GsuI | CTGGAG | 2 cut(s) | 92, 233 |
| HaeIII | GGCC | 1 cut(s) | 333 |
| HgaI | GACGC | 1 cut(s) | 121 |
| HhaI | GCGC | 2 cut(s) | 24, 547 |
| Hin6I | GCGC | 2 cut(s) | 22, 545 |
| HinP1I | GCGC | 2 cut(s) | 22, 545 |
| HincII | GTYRAC | 1 cut(s) | 493 |
| HindII | GTYRAC | 1 cut(s) | 493 |
| HinfI | GANTC | 2 cut(s) | 130, 267 |
| HpaI | GTTAAC | 1 cut(s) | 493 |
| HphI | GGTGA | 2 cut(s) | 328, 436 |
| Hpy166II | GTNNAC | 1 cut(s) | 493 |
| Hpy188I | TCNGA | 2 cut(s) | 179, 266 |
| Hpy188III | TCNNGA | 5 cut(s) | 109, 134, 271, 503, 530 |
| Hpy8I | GTNNAC | 1 cut(s) | 493 |
| HpyAV | CCTTC | 3 cut(s) | 304, 449, 657 |
| HpyCH4III | ACNGT | 1 cut(s) | 523 |
| HpyCH4V | TGCA | 6 cut(s) | 367, 379, 566, 575, 590, 608 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 364, 551, 560, 569, 572 |
| HpyF3I | CTNAG | 3 cut(s) | 153, 263, 420 |
| HspAI | GCGC | 2 cut(s) | 22, 545 |
| KspAI | GTTAAC | 1 cut(s) | 493 |
| Kzo9I | GATC | 1 cut(s) | 101 |
| LmnI | GCTCC | 1 cut(s) | 170 |
| LpnPI | CCDG | 9 cut(s) | 50, 122, 227, 236, 263, 284, 347, 582, 626 |
| Lsp1109I | GCAGC | 4 cut(s) | 550, 559, 592, 614 |
| LweI | GCATC | 2 cut(s) | 424, 436 |
| MaeI | CTAG | 2 cut(s) | 488, 650 |
| MaeIII | GTNAC | 2 cut(s) | 240, 316 |
| MalI | GATC | 1 cut(s) | 103 |
| MboI | GATC | 1 cut(s) | 101 |
| MboII | GAAGA | 5 cut(s) | 4, 133, 157, 415, 479 |
| MflI | RGATCY | 1 cut(s) | 101 |
| MluCI | AATT | 5 cut(s) | 372, 383, 410, 510, 655 |
| MseI | TTAA | 4 cut(s) | 141, 492, 540, 659 |
| MspA1I | CMGCKG | 2 cut(s) | 572, 605 |
| MspR9I | CCNGG | 1 cut(s) | 251 |
| Mva1269I | GAATGC | 1 cut(s) | 66 |
| MvaI | CCWGG | 1 cut(s) | 251 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 364, 551, 560, 569, 572 |
| NdeII | GATC | 1 cut(s) | 101 |
| NlaIV | GGNNCC | 2 cut(s) | 103, 212 |
| NmuCI | GTSAC | 2 cut(s) | 240, 316 |
| NspV | TTCGAA | 1 cut(s) | 202 |
| PctI | GAATGC | 1 cut(s) | 66 |
| PfeI | GAWTC | 2 cut(s) | 130, 267 |
| PkrI | GCNGC | 4 cut(s) | 565, 574, 604, 607 |
| PsiI | TTATAA | 1 cut(s) | 231 |
| Psp6I | CCWGG | 1 cut(s) | 249 |
| PspGI | CCWGG | 1 cut(s) | 249 |
| PspN4I | GGNNCC | 2 cut(s) | 103, 212 |
| PspPI | GGNCC | 1 cut(s) | 331 |
| PstI | CTGCAG | 1 cut(s) | 369 |
| PstNI | CAGNNNCTG | 2 cut(s) | 277, 557 |
| PsuI | RGATCY | 1 cut(s) | 101 |
| PvuII | CAGCTG | 2 cut(s) | 572, 605 |
| SaqAI | TTAA | 4 cut(s) | 141, 492, 540, 659 |
| SatI | GCNGC | 4 cut(s) | 564, 573, 603, 606 |
| Sau3AI | GATC | 1 cut(s) | 101 |
| Sau96I | GGNCC | 1 cut(s) | 331 |
| ScrFI | CCNGG | 1 cut(s) | 251 |
| SetI | ASST | 9 cut(s) | 175, 198, 237, 426, 489, 537, 574, 588, 607 |
| SfaNI | GCATC | 2 cut(s) | 424, 436 |
| SfcI | CTRYAG | 1 cut(s) | 365 |
| SfuI | TTCGAA | 1 cut(s) | 202 |
| SmlI | CTYRAG | 2 cut(s) | 236, 288 |
| SmoI | CTYRAG | 2 cut(s) | 236, 288 |
| Sse9I | AATT | 5 cut(s) | 372, 383, 410, 510, 655 |
| SsiI | CCGC | 2 cut(s) | 33, 46 |
| SspMI | CTAG | 2 cut(s) | 488, 650 |
| StyD4I | CCNGG | 1 cut(s) | 249 |
| TaaI | ACNGT | 1 cut(s) | 523 |
| TaqI | TCGA | 1 cut(s) | 202 |
| TasI | AATT | 5 cut(s) | 372, 383, 410, 510, 655 |
| TfiI | GAWTC | 2 cut(s) | 130, 267 |
| Tru1I | TTAA | 4 cut(s) | 141, 492, 540, 659 |
| Tru9I | TTAA | 4 cut(s) | 141, 492, 540, 659 |
| TscAI | CASTG | 2 cut(s) | 282, 369 |
| TseFI | GTSAC | 2 cut(s) | 240, 316 |
| TseI | GCWGC | 4 cut(s) | 563, 572, 602, 605 |
| Tsp45I | GTSAC | 2 cut(s) | 240, 316 |
| TspDTI | ATGAA | 4 cut(s) | 323, 353, 365, 522 |
| TspRI | CASTG | 2 cut(s) | 282, 369 |
| XapI | RAATTY | 1 cut(s) | 383 |
| XspI | CTAG | 2 cut(s) | 488, 650 |