ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Transposase_32 | PF20167 | 71 - 250 | 9.9e-26 | Putative plant transposon protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 240 |
| Acc65I | GGTACC | 1 cut(s) | 340 |
| AccB1I | GGYRCC | 1 cut(s) | 340 |
| AccII | CGCG | 1 cut(s) | 55 |
| AccIII | TCCGGA | 1 cut(s) | 784 |
| AciI | CCGC | 1 cut(s) | 1039 |
| AclWI | GGATC | 2 cut(s) | 239, 677 |
| AcsI | RAATTY | 3 cut(s) | 223, 272, 833 |
| AfaI | GTAC | 4 cut(s) | 58, 304, 342, 370 |
| AflII | CTTAAG | 1 cut(s) | 974 |
| AflIII | ACRYGT | 1 cut(s) | 91 |
| AgeI | ACCGGT | 1 cut(s) | 476 |
| AgsI | TTSAA | 7 cut(s) | 139, 170, 418, 591, 638, 942, 1054 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 686, 718 |
| AluBI | AGCT | 6 cut(s) | 20, 405, 544, 781, 1058, 1082 |
| AluI | AGCT | 6 cut(s) | 20, 405, 544, 781, 1058, 1082 |
| Alw26I | GTCTC | 1 cut(s) | 991 |
| AlwI | GGATC | 2 cut(s) | 239, 677 |
| Aor13HI | TCCGGA | 1 cut(s) | 784 |
| AoxI | GGCC | 1 cut(s) | 563 |
| ApeKI | GCWGC | 2 cut(s) | 442, 680 |
| ApoI | RAATTY | 3 cut(s) | 223, 272, 833 |
| AsiGI | ACCGGT | 1 cut(s) | 476 |
| Asp718I | GGTACC | 1 cut(s) | 340 |
| AspLEI | GCGC | 1 cut(s) | 55 |
| AspS9I | GGNCC | 2 cut(s) | 474, 531 |
| AsuHPI | GGTGA | 7 cut(s) | 43, 66, 76, 197, 497, 715, 1025 |
| AsuII | TTCGAA | 1 cut(s) | 911 |
| AvaII | GGWCC | 2 cut(s) | 474, 531 |
| AxyI | CCTNAGG | 1 cut(s) | 354 |
| BaeGI | GKGCMC | 1 cut(s) | 868 |
| BanI | GGYRCC | 1 cut(s) | 340 |
| BbvCI | CCTCAGC | 1 cut(s) | 291 |
| BbvI | GCAGC | 2 cut(s) | 454, 692 |
| BccI | CCATC | 1 cut(s) | 502 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 389, 423 |
| BciVI | GTATCC | 1 cut(s) | 289 |
| BclI | TGATCA | 1 cut(s) | 307 |
| BcoDI | GTCTC | 1 cut(s) | 991 |
| BfaI | CTAG | 3 cut(s) | 173, 570, 858 |
| BfrI | CTTAAG | 1 cut(s) | 974 |
| BfuI | GTATCC | 1 cut(s) | 289 |
| BisI | GCNGC | 2 cut(s) | 443, 681 |
| BlpI | GCTNAGC | 1 cut(s) | 540 |
| BlsI | GCNGC | 2 cut(s) | 444, 682 |
| Bme18I | GGWCC | 2 cut(s) | 474, 531 |
| BmgT120I | GGNCC | 2 cut(s) | 474, 531 |
| BmiI | GGNNCC | 4 cut(s) | 342, 475, 533, 789 |
| BmsI | GCATC | 3 cut(s) | 730, 811, 886 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 808, 840 |
| Bpu10I | CCTNAGC | 1 cut(s) | 291 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 540 |
| Bpu14I | TTCGAA | 1 cut(s) | 911 |
| BpuEI | CTTGAG | 2 cut(s) | 609, 984 |
| BsaJI | CCNNGG | 2 cut(s) | 8, 27 |
| BsaWI | WCCGGW | 2 cut(s) | 476, 784 |
| Bse118I | RCCGGY | 1 cut(s) | 476 |
| Bse1I | ACTGG | 2 cut(s) | 304, 1030 |
| Bse21I | CCTNAGG | 1 cut(s) | 354 |
| Bse3DI | GCAATG | 1 cut(s) | 48 |
| BseAI | TCCGGA | 1 cut(s) | 784 |
| BseDI | CCNNGG | 2 cut(s) | 8, 27 |
| BseGI | GGATG | 2 cut(s) | 184, 515 |
| BseMI | GCAATG | 1 cut(s) | 48 |
| BseMII | CTCAG | 5 cut(s) | 282, 345, 554, 559, 1050 |
| BseNI | ACTGG | 2 cut(s) | 304, 1030 |
| BseSI | GKGCMC | 1 cut(s) | 868 |
| BseXI | GCAGC | 2 cut(s) | 454, 692 |
| Bsh1236I | CGCG | 1 cut(s) | 55 |
| BshFI | GGCC | 1 cut(s) | 565 |
| BshNI | GGYRCC | 1 cut(s) | 340 |
| BshTI | ACCGGT | 1 cut(s) | 476 |
| BsiSI | CCGG | 2 cut(s) | 477, 785 |
| BslFI | GGGAC | 1 cut(s) | 487 |
| BsmAI | GTCTC | 1 cut(s) | 991 |
| BsmFI | GGGAC | 1 cut(s) | 487 |
| BsmI | GAATGC | 1 cut(s) | 985 |
| BsnI | GGCC | 1 cut(s) | 565 |
| Bsp119I | TTCGAA | 1 cut(s) | 911 |
| Bsp1286I | GDGCHC | 1 cut(s) | 868 |
| Bsp13I | TCCGGA | 1 cut(s) | 784 |
| Bsp143I | GATC | 6 cut(s) | 71, 244, 307, 520, 551, 669 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 540 |
| BspACI | CCGC | 1 cut(s) | 1039 |
| BspANI | GGCC | 1 cut(s) | 565 |
| BspCNI | CTCAG | 5 cut(s) | 283, 346, 553, 558, 1051 |
| BspEI | TCCGGA | 1 cut(s) | 784 |
| BspFNI | CGCG | 1 cut(s) | 55 |
| BspHI | TCATGA | 1 cut(s) | 736 |
| BspLI | GGNNCC | 4 cut(s) | 342, 475, 533, 789 |
| BspPI | GGATC | 2 cut(s) | 239, 677 |
| BspT104I | TTCGAA | 1 cut(s) | 911 |
| BspT107I | GGYRCC | 1 cut(s) | 340 |
| BspTI | CTTAAG | 1 cut(s) | 974 |
| BsrDI | GCAATG | 1 cut(s) | 48 |
| BsrFI | RCCGGY | 1 cut(s) | 476 |
| BsrI | ACTGG | 2 cut(s) | 304, 1030 |
| BssAI | RCCGGY | 1 cut(s) | 476 |
| BssECI | CCNNGG | 2 cut(s) | 8, 27 |
| BssMI | GATC | 6 cut(s) | 71, 244, 307, 520, 551, 669 |
| BssT1I | CCWWGG | 2 cut(s) | 8, 27 |
| Bst4CI | ACNGT | 2 cut(s) | 61, 800 |
| Bst6I | CTCTTC | 1 cut(s) | 883 |
| BstAFI | CTTAAG | 1 cut(s) | 974 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 448, 749 |
| BstBI | TTCGAA | 1 cut(s) | 911 |
| BstDEI | CTNAG | 5 cut(s) | 291, 354, 540, 545, 1059 |
| BstF5I | GGATG | 2 cut(s) | 184, 515 |
| BstFNI | CGCG | 1 cut(s) | 55 |
| BstHHI | GCGC | 1 cut(s) | 55 |
| BstKTI | GATC | 6 cut(s) | 74, 247, 310, 523, 554, 672 |
| BstMAI | GTCTC | 1 cut(s) | 991 |
| BstMBI | GATC | 6 cut(s) | 71, 244, 307, 520, 551, 669 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 287, 448, 740, 749, 787, 872, 1055 |
| BstNSI | RCATGY | 1 cut(s) | 1045 |
| BstSLI | GKGCMC | 1 cut(s) | 868 |
| BstUI | CGCG | 1 cut(s) | 55 |
| BstV1I | GCAGC | 2 cut(s) | 454, 692 |
| BstX2I | RGATCY | 1 cut(s) | 669 |
| BstYI | RGATCY | 1 cut(s) | 669 |
| Bsu36I | CCTNAGG | 1 cut(s) | 354 |
| BsuI | GTATCC | 1 cut(s) | 289 |
| BsuRI | GGCC | 1 cut(s) | 565 |
| BtsCI | GGATG | 2 cut(s) | 184, 515 |
| BtsIMutI | CAGTG | 2 cut(s) | 224, 805 |
| CciI | TCATGA | 1 cut(s) | 736 |
| CfoI | GCGC | 1 cut(s) | 55 |
| Cfr10I | RCCGGY | 1 cut(s) | 476 |
| Cfr13I | GGNCC | 2 cut(s) | 474, 531 |
| CseI | GACGC | 2 cut(s) | 149, 638 |
| Csp6I | GTAC | 4 cut(s) | 57, 303, 341, 369 |
| CspAI | ACCGGT | 1 cut(s) | 476 |
| CviAII | CATG | 9 cut(s) | 482, 582, 650, 699, 737, 890, 992, 1042, 1091 |
| CviQI | GTAC | 4 cut(s) | 57, 303, 341, 369 |
| DdeI | CTNAG | 5 cut(s) | 291, 354, 540, 545, 1059 |
| DpnI | GATC | 6 cut(s) | 73, 246, 309, 522, 553, 671 |
| DpnII | GATC | 6 cut(s) | 71, 244, 307, 520, 551, 669 |
| Eam1104I | CTCTTC | 1 cut(s) | 883 |
| EarI | CTCTTC | 1 cut(s) | 883 |
| Eco130I | CCWWGG | 2 cut(s) | 8, 27 |
| Eco47I | GGWCC | 2 cut(s) | 474, 531 |
| Eco81I | CCTNAGG | 1 cut(s) | 354 |
| EcoO109I | RGGNCCY | 1 cut(s) | 531 |
| EcoRI | GAATTC | 2 cut(s) | 223, 272 |
| EcoT14I | CCWWGG | 2 cut(s) | 8, 27 |
| ErhI | CCWWGG | 2 cut(s) | 8, 27 |
| FaeI | CATG | 9 cut(s) | 485, 585, 653, 702, 740, 893, 995, 1045, 1094 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 431, 463 |
| FaqI | GGGAC | 1 cut(s) | 487 |
| FatI | CATG | 9 cut(s) | 481, 581, 649, 698, 736, 889, 991, 1041, 1090 |
| FauI | CCCGC | 1 cut(s) | 1046 |
| FbaI | TGATCA | 1 cut(s) | 307 |
| Fnu4HI | GCNGC | 2 cut(s) | 443, 681 |
| FokI | GGATG | 2 cut(s) | 191, 522 |
| Fsp4HI | GCNGC | 2 cut(s) | 443, 681 |
| FspBI | CTAG | 3 cut(s) | 173, 570, 858 |
| GlaI | GCGC | 1 cut(s) | 54 |
| GluI | GCNGC | 2 cut(s) | 443, 681 |
| HaeIII | GGCC | 1 cut(s) | 565 |
| HapII | CCGG | 2 cut(s) | 477, 785 |
| HgaI | GACGC | 2 cut(s) | 149, 638 |
| HhaI | GCGC | 1 cut(s) | 55 |
| Hin1II | CATG | 9 cut(s) | 485, 585, 653, 702, 740, 893, 995, 1045, 1094 |
| Hin6I | GCGC | 1 cut(s) | 53 |
| HinP1I | GCGC | 1 cut(s) | 53 |
| HincII | GTYRAC | 1 cut(s) | 796 |
| HindII | GTYRAC | 1 cut(s) | 796 |
| HindIII | AAGCTT | 2 cut(s) | 18, 779 |
| HinfI | GANTC | 3 cut(s) | 4, 467, 913 |
| HpaII | CCGG | 2 cut(s) | 477, 785 |
| HphI | GGTGA | 7 cut(s) | 43, 66, 76, 197, 497, 715, 1025 |
| Hpy166II | GTNNAC | 2 cut(s) | 395, 796 |
| Hpy188I | TCNGA | 2 cut(s) | 457, 516 |
| Hpy8I | GTNNAC | 2 cut(s) | 395, 796 |
| HpyAV | CCTTC | 4 cut(s) | 87, 462, 470, 576 |
| HpyCH4III | ACNGT | 2 cut(s) | 61, 800 |
| HpyCH4IV | ACGT | 3 cut(s) | 91, 142, 214 |
| HpyCH4V | TGCA | 4 cut(s) | 743, 763, 889, 934 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 287, 448, 740, 749, 787, 872, 1055 |
| HpyF3I | CTNAG | 5 cut(s) | 291, 354, 540, 545, 1059 |
| HpySE526I | ACGT | 3 cut(s) | 91, 142, 214 |
| Hsp92II | CATG | 9 cut(s) | 485, 585, 653, 702, 740, 893, 995, 1045, 1094 |
| HspAI | GCGC | 1 cut(s) | 53 |
| Kpn2I | TCCGGA | 1 cut(s) | 784 |
| KpnI | GGTACC | 1 cut(s) | 344 |
| Ksp22I | TGATCA | 1 cut(s) | 307 |
| Kzo9I | GATC | 6 cut(s) | 71, 244, 307, 520, 551, 669 |
| LmnI | GCTCC | 1 cut(s) | 787 |
| Lsp1109I | GCAGC | 2 cut(s) | 454, 692 |
| LweI | GCATC | 3 cut(s) | 730, 811, 886 |
| MaeI | CTAG | 3 cut(s) | 173, 570, 858 |
| MaeII | ACGT | 3 cut(s) | 91, 142, 214 |
| MaeIII | GTNAC | 6 cut(s) | 82, 98, 143, 964, 994, 1013 |
| MalI | GATC | 6 cut(s) | 73, 246, 309, 522, 553, 671 |
| MboI | GATC | 6 cut(s) | 71, 244, 307, 520, 551, 669 |
| MboII | GAAGA | 4 cut(s) | 200, 371, 846, 870 |
| MflI | RGATCY | 1 cut(s) | 669 |
| MhlI | GDGCHC | 1 cut(s) | 868 |
| MluCI | AATT | 7 cut(s) | 223, 272, 609, 729, 833, 942, 1065 |
| MlyI | GAGTC | 1 cut(s) | 13 |
| MmeI | TCCRAC | 1 cut(s) | 864 |
| MnlI | CCTC | 6 cut(s) | 34, 169, 286, 349, 393, 886 |
| MroI | TCCGGA | 1 cut(s) | 784 |
| MseI | TTAA | 8 cut(s) | 15, 111, 207, 348, 608, 905, 975, 1064 |
| MslI | CAYNNNNRTG | 1 cut(s) | 894 |
| MspCI | CTTAAG | 1 cut(s) | 974 |
| MspI | CCGG | 2 cut(s) | 477, 785 |
| Mva1269I | GAATGC | 1 cut(s) | 985 |
| MvnI | CGCG | 1 cut(s) | 55 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 287, 448, 740, 749, 787, 872, 1055 |
| NdeII | GATC | 6 cut(s) | 71, 244, 307, 520, 551, 669 |
| NlaIII | CATG | 9 cut(s) | 485, 585, 653, 702, 740, 893, 995, 1045, 1094 |
| NlaIV | GGNNCC | 4 cut(s) | 342, 475, 533, 789 |
| NmuCI | GTSAC | 2 cut(s) | 82, 1013 |
| NspI | RCATGY | 1 cut(s) | 1045 |
| NspV | TTCGAA | 1 cut(s) | 911 |
| PagI | TCATGA | 1 cut(s) | 736 |
| PctI | GAATGC | 1 cut(s) | 985 |
| PfeI | GAWTC | 2 cut(s) | 467, 913 |
| PflFI | GACNNNGTC | 1 cut(s) | 800 |
| PinAI | ACCGGT | 1 cut(s) | 476 |
| PkrI | GCNGC | 2 cut(s) | 444, 682 |
| PleI | GAGTC | 1 cut(s) | 12 |
| PpsI | GAGTC | 1 cut(s) | 12 |
| PpuMI | RGGWCCY | 1 cut(s) | 531 |
| PsiI | TTATAA | 1 cut(s) | 240 |
| Psp5II | RGGWCCY | 1 cut(s) | 531 |
| PspN4I | GGNNCC | 4 cut(s) | 342, 475, 533, 789 |
| PspPI | GGNCC | 2 cut(s) | 474, 531 |
| PspPPI | RGGWCCY | 1 cut(s) | 531 |
| PsuI | RGATCY | 1 cut(s) | 669 |
| PsyI | GACNNNGTC | 1 cut(s) | 800 |
| RsaI | GTAC | 4 cut(s) | 58, 304, 342, 370 |
| RsaNI | GTAC | 4 cut(s) | 57, 303, 341, 369 |
| RseI | CAYNNNNRTG | 1 cut(s) | 894 |
| SaqAI | TTAA | 8 cut(s) | 15, 111, 207, 348, 608, 905, 975, 1064 |
| SatI | GCNGC | 2 cut(s) | 443, 681 |
| Sau3AI | GATC | 6 cut(s) | 71, 244, 307, 520, 551, 669 |
| Sau96I | GGNCC | 2 cut(s) | 474, 531 |
| SchI | GAGTC | 1 cut(s) | 13 |
| SduI | GDGCHC | 1 cut(s) | 868 |
| SfaNI | GCATC | 3 cut(s) | 730, 811, 886 |
| SfuI | TTCGAA | 1 cut(s) | 911 |
| SinI | GGWCC | 2 cut(s) | 474, 531 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 894 |
| SmlI | CTYRAG | 3 cut(s) | 624, 974, 999 |
| SmoI | CTYRAG | 3 cut(s) | 624, 974, 999 |
| Sse9I | AATT | 7 cut(s) | 223, 272, 609, 729, 833, 942, 1065 |
| SsiI | CCGC | 1 cut(s) | 1039 |
| SspI | AATATT | 2 cut(s) | 202, 1021 |
| SspMI | CTAG | 3 cut(s) | 173, 570, 858 |
| StyI | CCWWGG | 2 cut(s) | 8, 27 |
| TaaI | ACNGT | 2 cut(s) | 61, 800 |
| TaiI | ACGT | 3 cut(s) | 94, 145, 217 |
| TaqI | TCGA | 2 cut(s) | 364, 911 |
| TasI | AATT | 7 cut(s) | 223, 272, 609, 729, 833, 942, 1065 |
| TatI | WGTACW | 1 cut(s) | 368 |
| TfiI | GAWTC | 2 cut(s) | 467, 913 |
| Tru1I | TTAA | 8 cut(s) | 15, 111, 207, 348, 608, 905, 975, 1064 |
| Tru9I | TTAA | 8 cut(s) | 15, 111, 207, 348, 608, 905, 975, 1064 |
| TscAI | CASTG | 2 cut(s) | 224, 805 |
| TseFI | GTSAC | 2 cut(s) | 82, 1013 |
| TseI | GCWGC | 2 cut(s) | 442, 680 |
| Tsp45I | GTSAC | 2 cut(s) | 82, 1013 |
| TspDTI | ATGAA | 3 cut(s) | 138, 666, 791 |
| TspRI | CASTG | 2 cut(s) | 224, 805 |
| Tth111I | GACNNNGTC | 1 cut(s) | 800 |
| Vha464I | CTTAAG | 1 cut(s) | 974 |
| VpaK11BI | GGWCC | 2 cut(s) | 474, 531 |
| XapI | RAATTY | 3 cut(s) | 223, 272, 833 |
| XceI | RCATGY | 1 cut(s) | 1045 |
| XspI | CTAG | 3 cut(s) | 173, 570, 858 |