ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 56 |
| Acc36I | ACCTGC | 1 cut(s) | 56 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 358 |
| AciI | CCGC | 2 cut(s) | 59, 309 |
| AclWI | GGATC | 2 cut(s) | 143, 601 |
| AcoI | YGGCCR | 1 cut(s) | 247 |
| AcsI | RAATTY | 2 cut(s) | 263, 734 |
| AdeI | CACNNNGTG | 2 cut(s) | 647, 896 |
| AfaI | GTAC | 4 cut(s) | 18, 357, 1022, 1052 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 358, 417 |
| AflIII | ACRYGT | 1 cut(s) | 1017 |
| AgsI | TTSAA | 4 cut(s) | 450, 770, 818, 961 |
| AjnI | CCWGG | 4 cut(s) | 73, 179, 189, 249 |
| AluBI | AGCT | 6 cut(s) | 56, 548, 566, 655, 719, 1091 |
| AluI | AGCT | 6 cut(s) | 56, 548, 566, 655, 719, 1091 |
| Alw21I | GWGCWC | 1 cut(s) | 477 |
| Alw26I | GTCTC | 2 cut(s) | 620, 972 |
| Alw44I | GTGCAC | 1 cut(s) | 473 |
| AlwI | GGATC | 2 cut(s) | 143, 601 |
| Ama87I | CYCGRG | 1 cut(s) | 478 |
| AoxI | GGCC | 2 cut(s) | 247, 628 |
| ApaLI | GTGCAC | 1 cut(s) | 473 |
| ApeKI | GCWGC | 3 cut(s) | 56, 548, 563 |
| ApoI | RAATTY | 2 cut(s) | 263, 734 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 765 |
| AspLEI | GCGC | 1 cut(s) | 665 |
| AspS9I | GGNCC | 2 cut(s) | 71, 277 |
| AsuHPI | GGTGA | 4 cut(s) | 37, 100, 616, 839 |
| AvaI | CYCGRG | 1 cut(s) | 478 |
| AvaII | GGWCC | 2 cut(s) | 71, 277 |
| BaeGI | GKGCMC | 1 cut(s) | 477 |
| BalI | TGGCCA | 1 cut(s) | 249 |
| BbsI | GAAGAC | 1 cut(s) | 286 |
| Bbv12I | GWGCWC | 1 cut(s) | 477 |
| BbvCI | CCTCAGC | 1 cut(s) | 117 |
| BbvI | GCAGC | 3 cut(s) | 43, 535, 575 |
| BccI | CCATC | 4 cut(s) | 130, 863, 867, 975 |
| BciT130I | CCWGG | 4 cut(s) | 75, 181, 191, 251 |
| BcoDI | GTCTC | 2 cut(s) | 620, 972 |
| BfmI | CTRYAG | 1 cut(s) | 549 |
| BfuAI | ACCTGC | 1 cut(s) | 56 |
| BisI | GCNGC | 3 cut(s) | 57, 549, 564 |
| BlpI | GCTNAGC | 1 cut(s) | 651 |
| BlsI | GCNGC | 3 cut(s) | 58, 550, 565 |
| BmcAI | AGTACT | 1 cut(s) | 357 |
| Bme1390I | CCNGG | 4 cut(s) | 75, 181, 191, 251 |
| Bme18I | GGWCC | 2 cut(s) | 71, 277 |
| BmeT110I | CYCGRG | 1 cut(s) | 478 |
| BmgT120I | GGNCC | 2 cut(s) | 71, 277 |
| BmiI | GGNNCC | 3 cut(s) | 72, 278, 622 |
| BmrFI | CCNGG | 4 cut(s) | 75, 181, 191, 251 |
| BmrI | ACTGGG | 1 cut(s) | 368 |
| BmsI | GCATC | 2 cut(s) | 674, 793 |
| BmuI | ACTGGG | 1 cut(s) | 368 |
| BpiI | GAAGAC | 1 cut(s) | 286 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 100, 132 |
| BpmI | CTGGAG | 1 cut(s) | 321 |
| Bpu10I | CCTNAGC | 2 cut(s) | 117, 656 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 651 |
| BsaBI | GATNNNNATC | 1 cut(s) | 134 |
| BsaI | GGTCTC | 2 cut(s) | 620, 972 |
| BsaJI | CCNNGG | 3 cut(s) | 180, 189, 203 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 358, 417 |
| Bse1I | ACTGG | 3 cut(s) | 304, 363, 952 |
| Bse3DI | GCAATG | 3 cut(s) | 5, 329, 851 |
| Bse8I | GATNNNNATC | 1 cut(s) | 134 |
| BseBI | CCWGG | 4 cut(s) | 75, 181, 191, 251 |
| BseDI | CCNNGG | 3 cut(s) | 180, 189, 203 |
| BseGI | GGATG | 4 cut(s) | 109, 488, 878, 986 |
| BseJI | GATNNNNATC | 1 cut(s) | 134 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 358, 417 |
| BseMI | GCAATG | 3 cut(s) | 5, 329, 851 |
| BseMII | CTCAG | 2 cut(s) | 131, 547 |
| BseNI | ACTGG | 3 cut(s) | 304, 363, 952 |
| BseSI | GKGCMC | 1 cut(s) | 477 |
| BseXI | GCAGC | 3 cut(s) | 43, 535, 575 |
| BsgI | GTGCAG | 3 cut(s) | 133, 462, 582 |
| BshFI | GGCC | 2 cut(s) | 249, 630 |
| BsiHKAI | GWGCWC | 1 cut(s) | 477 |
| BsiHKCI | CYCGRG | 1 cut(s) | 478 |
| BslFI | GGGAC | 4 cut(s) | 84, 172, 290, 412 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 358, 417 |
| BsmAI | GTCTC | 2 cut(s) | 620, 972 |
| BsmFI | GGGAC | 4 cut(s) | 84, 172, 290, 412 |
| BsmI | GAATGC | 1 cut(s) | 311 |
| BsnI | GGCC | 2 cut(s) | 249, 630 |
| Bso31I | GGTCTC | 2 cut(s) | 620, 972 |
| BsoBI | CYCGRG | 1 cut(s) | 478 |
| Bsp1286I | GDGCHC | 1 cut(s) | 477 |
| Bsp1407I | TGTACA | 1 cut(s) | 1020 |
| Bsp143I | GATC | 4 cut(s) | 135, 593, 997, 1096 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 651 |
| BspACI | CCGC | 2 cut(s) | 59, 309 |
| BspANI | GGCC | 2 cut(s) | 249, 630 |
| BspCNI | CTCAG | 2 cut(s) | 130, 546 |
| BspLI | GGNNCC | 3 cut(s) | 72, 278, 622 |
| BspMAI | CTGCAG | 1 cut(s) | 553 |
| BspMI | ACCTGC | 1 cut(s) | 56 |
| BspPI | GGATC | 2 cut(s) | 143, 601 |
| BspTNI | GGTCTC | 2 cut(s) | 620, 972 |
| BsrDI | GCAATG | 3 cut(s) | 5, 329, 851 |
| BsrGI | TGTACA | 1 cut(s) | 1020 |
| BsrI | ACTGG | 3 cut(s) | 304, 363, 952 |
| BssECI | CCNNGG | 3 cut(s) | 180, 189, 203 |
| BssMI | GATC | 4 cut(s) | 135, 593, 997, 1096 |
| Bst2UI | CCWGG | 4 cut(s) | 75, 181, 191, 251 |
| Bst4CI | ACNGT | 5 cut(s) | 292, 469, 625, 755, 886 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 324, 348, 647 |
| BstAUI | TGTACA | 1 cut(s) | 1020 |
| BstC8I | GCNNGC | 3 cut(s) | 320, 553, 858 |
| BstDEI | CTNAG | 4 cut(s) | 117, 533, 651, 656 |
| BstF5I | GGATG | 4 cut(s) | 109, 488, 878, 986 |
| BstHHI | GCGC | 1 cut(s) | 665 |
| BstKTI | GATC | 4 cut(s) | 138, 596, 1000, 1099 |
| BstMAI | GTCTC | 2 cut(s) | 620, 972 |
| BstMBI | GATC | 4 cut(s) | 135, 593, 997, 1096 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 62, 315, 324, 348, 647, 809, 857 |
| BstNI | CCWGG | 4 cut(s) | 75, 181, 191, 251 |
| BstNSI | RCATGY | 3 cut(s) | 318, 864, 1021 |
| BstSCI | CCNGG | 4 cut(s) | 73, 179, 189, 249 |
| BstSFI | CTRYAG | 1 cut(s) | 549 |
| BstSLI | GKGCMC | 1 cut(s) | 477 |
| BstV1I | GCAGC | 3 cut(s) | 43, 535, 575 |
| BstV2I | GAAGAC | 1 cut(s) | 286 |
| BsuRI | GGCC | 2 cut(s) | 249, 630 |
| BtgZI | GCGATG | 1 cut(s) | 882 |
| BtsCI | GGATG | 4 cut(s) | 109, 488, 878, 986 |
| BtsI | GCAGTG | 2 cut(s) | 172, 174 |
| BtsIMutI | CAGTG | 4 cut(s) | 172, 174, 297, 463 |
| BveI | ACCTGC | 1 cut(s) | 56 |
| Cac8I | GCNNGC | 3 cut(s) | 320, 553, 858 |
| CfoI | GCGC | 1 cut(s) | 665 |
| Cfr13I | GGNCC | 2 cut(s) | 71, 277 |
| Csp6I | GTAC | 4 cut(s) | 17, 356, 1021, 1051 |
| CviAII | CATG | 7 cut(s) | 66, 218, 281, 315, 861, 1018, 1138 |
| CviQI | GTAC | 4 cut(s) | 17, 356, 1021, 1051 |
| DdeI | CTNAG | 4 cut(s) | 117, 533, 651, 656 |
| DpnI | GATC | 4 cut(s) | 137, 595, 999, 1098 |
| DpnII | GATC | 4 cut(s) | 135, 593, 997, 1096 |
| DraI | TTTAAA | 1 cut(s) | 1075 |
| DraIII | CACNNNGTG | 2 cut(s) | 647, 896 |
| EaeI | YGGCCR | 1 cut(s) | 247 |
| Eco147I | AGGCCT | 1 cut(s) | 630 |
| Eco31I | GGTCTC | 2 cut(s) | 620, 972 |
| Eco32I | GATATC | 1 cut(s) | 1081 |
| Eco47I | GGWCC | 2 cut(s) | 71, 277 |
| Eco88I | CYCGRG | 1 cut(s) | 478 |
| EcoO109I | RGGNCCY | 1 cut(s) | 71 |
| EcoRII | CCWGG | 4 cut(s) | 73, 179, 189, 249 |
| EcoRV | GATATC | 1 cut(s) | 1081 |
| EcoT22I | ATGCAT | 2 cut(s) | 329, 387 |
| FaeI | CATG | 7 cut(s) | 69, 221, 284, 318, 864, 1021, 1141 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 513, 545, 954, 986 |
| FaqI | GGGAC | 4 cut(s) | 84, 172, 290, 412 |
| FatI | CATG | 7 cut(s) | 65, 217, 280, 314, 860, 1017, 1137 |
| Fnu4HI | GCNGC | 3 cut(s) | 57, 549, 564 |
| FokI | GGATG | 4 cut(s) | 116, 495, 885, 993 |
| Fsp4HI | GCNGC | 3 cut(s) | 57, 549, 564 |
| GlaI | GCGC | 1 cut(s) | 664 |
| GluI | GCNGC | 3 cut(s) | 57, 549, 564 |
| GsuI | CTGGAG | 1 cut(s) | 321 |
| HaeIII | GGCC | 2 cut(s) | 249, 630 |
| HhaI | GCGC | 1 cut(s) | 665 |
| Hin1II | CATG | 7 cut(s) | 69, 221, 284, 318, 864, 1021, 1141 |
| Hin6I | GCGC | 1 cut(s) | 663 |
| HinP1I | GCGC | 1 cut(s) | 663 |
| HincII | GTYRAC | 3 cut(s) | 288, 685, 1015 |
| HindII | GTYRAC | 3 cut(s) | 288, 685, 1015 |
| HindIII | AAGCTT | 3 cut(s) | 653, 717, 1089 |
| HinfI | GANTC | 2 cut(s) | 109, 185 |
| HpaI | GTTAAC | 1 cut(s) | 288 |
| HphI | GGTGA | 4 cut(s) | 37, 100, 616, 839 |
| Hpy166II | GTNNAC | 5 cut(s) | 113, 288, 475, 685, 1015 |
| Hpy188I | TCNGA | 5 cut(s) | 127, 207, 620, 997, 1101 |
| Hpy188III | TCNNGA | 3 cut(s) | 480, 515, 695 |
| Hpy8I | GTNNAC | 5 cut(s) | 113, 288, 475, 685, 1015 |
| HpyAV | CCTTC | 5 cut(s) | 21, 266, 539, 1014, 1103 |
| HpyCH4III | ACNGT | 5 cut(s) | 292, 469, 625, 755, 886 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 62, 315, 324, 348, 647, 809, 857 |
| HpyF3I | CTNAG | 4 cut(s) | 117, 533, 651, 656 |
| Hsp92II | CATG | 7 cut(s) | 69, 221, 284, 318, 864, 1021, 1141 |
| HspAI | GCGC | 1 cut(s) | 663 |
| KspAI | GTTAAC | 1 cut(s) | 288 |
| Kzo9I | GATC | 4 cut(s) | 135, 593, 997, 1096 |
| Lsp1109I | GCAGC | 3 cut(s) | 43, 535, 575 |
| LweI | GCATC | 2 cut(s) | 674, 793 |
| MaeIII | GTNAC | 5 cut(s) | 167, 256, 827, 841, 886 |
| MalI | GATC | 4 cut(s) | 137, 595, 999, 1098 |
| MboI | GATC | 4 cut(s) | 135, 593, 997, 1096 |
| MboII | GAAGA | 3 cut(s) | 286, 716, 963 |
| MfeI | CAATTG | 1 cut(s) | 504 |
| MhlI | GDGCHC | 1 cut(s) | 477 |
| MlsI | TGGCCA | 1 cut(s) | 249 |
| MluCI | AATT | 6 cut(s) | 141, 263, 504, 675, 726, 734 |
| MluNI | TGGCCA | 1 cut(s) | 249 |
| MlyI | GAGTC | 2 cut(s) | 118, 194 |
| Mox20I | TGGCCA | 1 cut(s) | 249 |
| Mph1103I | ATGCAT | 2 cut(s) | 329, 387 |
| MroXI | GAANNNNTTC | 1 cut(s) | 765 |
| MscI | TGGCCA | 1 cut(s) | 249 |
| MseI | TTAA | 4 cut(s) | 287, 741, 780, 1074 |
| MslI | CAYNNNNRTG | 3 cut(s) | 438, 817, 836 |
| Msp20I | TGGCCA | 1 cut(s) | 249 |
| MspR9I | CCNGG | 4 cut(s) | 75, 181, 191, 251 |
| MunI | CAATTG | 1 cut(s) | 504 |
| Mva1269I | GAATGC | 1 cut(s) | 311 |
| MvaI | CCWGG | 4 cut(s) | 75, 181, 191, 251 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 62, 315, 324, 348, 647, 809, 857 |
| NdeII | GATC | 4 cut(s) | 135, 593, 997, 1096 |
| NlaIII | CATG | 7 cut(s) | 69, 221, 284, 318, 864, 1021, 1141 |
| NlaIV | GGNNCC | 3 cut(s) | 72, 278, 622 |
| NmuCI | GTSAC | 4 cut(s) | 167, 256, 827, 886 |
| NsiI | ATGCAT | 2 cut(s) | 329, 387 |
| NspI | RCATGY | 3 cut(s) | 318, 864, 1021 |
| PaqCI | CACCTGC | 1 cut(s) | 56 |
| PceI | AGGCCT | 1 cut(s) | 630 |
| PciI | ACATGT | 1 cut(s) | 1017 |
| PctI | GAATGC | 1 cut(s) | 311 |
| PdmI | GAANNNNTTC | 1 cut(s) | 765 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 358 |
| PkrI | GCNGC | 3 cut(s) | 58, 550, 565 |
| PleI | GAGTC | 2 cut(s) | 117, 193 |
| PpsI | GAGTC | 2 cut(s) | 117, 193 |
| PpuMI | RGGWCCY | 1 cut(s) | 71 |
| PscI | ACATGT | 1 cut(s) | 1017 |
| Psp5II | RGGWCCY | 1 cut(s) | 71 |
| Psp6I | CCWGG | 4 cut(s) | 73, 179, 189, 249 |
| PspGI | CCWGG | 4 cut(s) | 73, 179, 189, 249 |
| PspN4I | GGNNCC | 3 cut(s) | 72, 278, 622 |
| PspPI | GGNCC | 2 cut(s) | 71, 277 |
| PspPPI | RGGWCCY | 1 cut(s) | 71 |
| PstI | CTGCAG | 1 cut(s) | 553 |
| RsaI | GTAC | 4 cut(s) | 18, 357, 1022, 1052 |
| RsaNI | GTAC | 4 cut(s) | 17, 356, 1021, 1051 |
| RseI | CAYNNNNRTG | 3 cut(s) | 438, 817, 836 |
| SaqAI | TTAA | 4 cut(s) | 287, 741, 780, 1074 |
| SatI | GCNGC | 3 cut(s) | 57, 549, 564 |
| Sau3AI | GATC | 4 cut(s) | 135, 593, 997, 1096 |
| Sau96I | GGNCC | 2 cut(s) | 71, 277 |
| ScaI | AGTACT | 1 cut(s) | 357 |
| SchI | GAGTC | 2 cut(s) | 118, 194 |
| ScrFI | CCNGG | 4 cut(s) | 75, 181, 191, 251 |
| SduI | GDGCHC | 1 cut(s) | 477 |
| SfaNI | GCATC | 2 cut(s) | 674, 793 |
| SfcI | CTRYAG | 1 cut(s) | 549 |
| SinI | GGWCC | 2 cut(s) | 71, 277 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 438, 817, 836 |
| Sse9I | AATT | 6 cut(s) | 141, 263, 504, 675, 726, 734 |
| SseBI | AGGCCT | 1 cut(s) | 630 |
| SsiI | CCGC | 2 cut(s) | 59, 309 |
| SspI | AATATT | 1 cut(s) | 939 |
| StuI | AGGCCT | 1 cut(s) | 630 |
| StyD4I | CCNGG | 4 cut(s) | 73, 179, 189, 249 |
| TaaI | ACNGT | 5 cut(s) | 292, 469, 625, 755, 886 |
| TasI | AATT | 6 cut(s) | 141, 263, 504, 675, 726, 734 |
| TatI | WGTACW | 3 cut(s) | 355, 1020, 1050 |
| Tru1I | TTAA | 4 cut(s) | 287, 741, 780, 1074 |
| Tru9I | TTAA | 4 cut(s) | 287, 741, 780, 1074 |
| TscAI | CASTG | 4 cut(s) | 172, 181, 304, 463 |
| TseFI | GTSAC | 4 cut(s) | 167, 256, 827, 886 |
| TseI | GCWGC | 3 cut(s) | 56, 548, 563 |
| Tsp45I | GTSAC | 4 cut(s) | 167, 256, 827, 886 |
| TspDTI | ATGAA | 1 cut(s) | 234 |
| TspGWI | ACGGA | 1 cut(s) | 4 |
| TspRI | CASTG | 4 cut(s) | 172, 181, 304, 463 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 358 |
| VneI | GTGCAC | 1 cut(s) | 473 |
| VpaK11BI | GGWCC | 2 cut(s) | 71, 277 |
| XapI | RAATTY | 2 cut(s) | 263, 734 |
| XceI | RCATGY | 3 cut(s) | 318, 864, 1021 |
| XmnI | GAANNNNTTC | 1 cut(s) | 765 |
| ZrmI | AGTACT | 1 cut(s) | 357 |
| Zsp2I | ATGCAT | 2 cut(s) | 329, 387 |