MD13G1019000.v1.1

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000031
Physical Location & Seq
Forward (+)
1183236 .. 1184776
1541 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1019000.v1.1.491

Sequence Viewer

Length: 948 bp
ATGGCTATTTGGAAGATGCGTAATAAAGTGAAGTTTGAAGGCAAACCTCCCTCATTCTCACGTCTCTGCCGCTCCACCTCGGCCTGGATTAGGCAGGTTGGAGCTCTCACCCCTGGCCATGTACGAGGCATTTTGGACAGGCAACTTTTAGTCTCTCTTGGAATATCGCCTAACTCCTGTAAAGCTCCTTCTATTGTCCCTGTTCTTTGGCACCCCCCTCATTTTTCTTGGGTCAAAGTGAATACTGATGGCCTTGCTAAAGGTAATCCGGGTCCTGCGGCATGTGGCGGGGTTTTTCGAGATTCTGCGGGTTATTTTATTGGTGGTTTCTCCCTAAGCTTGGGCCATCGTACTTCTTTCTATGCGGAGCTCCATGCTGTCATCCTTGCTGTCGAATTGGCCCACGCGCGGGGCTGGCAAAATTTATGGCTTGAAAGCGACTCTTCGAGTGTAATATCATGTTTTGCTTCTGGATCTTTCTCTCCCCCTTGGTCGCTCCAGACACGCTGGAACAATTGTACTCTCCATTTGCAGAACATGGTTTTTCGTTGCTCTCATATTTTTCGAGAATGGAATGTTGTTGCTGACAAATTAGCCAATTTAGGGTTTCTATCATCTTCACTTGTCTGGCATTCCTCTCCTCCGATTGAGATCCTCCCCTCTCTGCACTCAGATTTCTTGGGCATGCCAACCTACAGTTTGTCTTGCAGGTTATTACCTTTTAAGGTTTATAGAGGGGTTTGGGCTTATGTCCGCCTAGTCTTTTCCTTGTATTTTCTTTTCCAAGAGGGGTACGGTCTATGTCCCCCCCTCTTTTTCCAGCATTTCCTTTCTCAAAAGGGTCGGTGTGATTCTCCAGCAACAGCCCATACAGTGGATGGCCCGCAATCCTCCTCTTTAGAACCTCCTCCTCCTCCTCTACTATATCACCTTCACCTTTTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

316

Amino Acids

35.12

Weight (kDa)

9.3

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 81 - 201 4.4e-18 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000031)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G05755
fragaria_vesca FvH4_1g13571 FvH4_2g06951 FvH4_2g09612 FvH4_3g24991 FvH4_3g39131 FvH4_4g01331 FvH4_5g11071 FvH4_5g22144 FvH4_5g22144 FvH4_5g27541 FvH4_5g38601 FvH4_6g09211 FvH4_6g17161 FvH4_6g30101 FvH4_6g30102 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g42420 FvH4_6g51131 FvH4_7g28851
malus_domestica MD02G1021900.v1.1 MD02G1050700.v1.1 MD02G1314000.v1.1 MD05G1244100.v1.1 MD07G1021300.v1.1 MD09G1113200.v1.1 MD09G1113300.v1.1 MD13G1019000.v1.1 MD17G1103400.v1.1
prunus_persica Prupe.1G484600_v2.0.a1 Prupe.3G211200_v2.0.a1 Prupe.3G211200_v2.0.a1 Prupe.4G283800_v2.0.a1
pyrus_communis pycom01g13080 pycom03g05530 pycom05g09360 pycom05g20240 pycom06g06350 pycom06g14660 pycom09g03750 pycom13g22930 pycom14g00800 pycom15g35930 pycom17g09770 pycom17g25010
rosa_chinensis RchiOBHm_Chr1g0316991 RchiOBHm_Chr1g0321411 RchiOBHm_Chr1g0341061 RchiOBHm_Chr1g0352021 RchiOBHm_Chr1g0357231 RchiOBHm_Chr1g0361641 RchiOBHm_Chr1g0379151 RchiOBHm_Chr2g0084861 RchiOBHm_Chr2g0092021 RchiOBHm_Chr2g0102721 RchiOBHm_Chr2g0119161 RchiOBHm_Chr2g0120021 RchiOBHm_Chr2g0120031 RchiOBHm_Chr2g0120451 RchiOBHm_Chr2g0129631 RchiOBHm_Chr2g0133661 RchiOBHm_Chr2g0140031 RchiOBHm_Chr2g0154361 RchiOBHm_Chr2g0158311 RchiOBHm_Chr2g0160431 RchiOBHm_Chr2g0167951 RchiOBHm_Chr2g0168801 RchiOBHm_Chr3g0451531 RchiOBHm_Chr3g0453641 RchiOBHm_Chr3g0453831 RchiOBHm_Chr3g0455401 RchiOBHm_Chr3g0457461 RchiOBHm_Chr3g0459251 RchiOBHm_Chr3g0462451 RchiOBHm_Chr3g0465511 RchiOBHm_Chr3g0466111 RchiOBHm_Chr3g0469201 RchiOBHm_Chr3g0472791 RchiOBHm_Chr3g0472841 RchiOBHm_Chr4g0391691 RchiOBHm_Chr4g0393351 RchiOBHm_Chr4g0395061 RchiOBHm_Chr4g0395191 RchiOBHm_Chr4g0397541 RchiOBHm_Chr4g0402261 RchiOBHm_Chr4g0409421 RchiOBHm_Chr4g0417481 RchiOBHm_Chr4g0428291 RchiOBHm_Chr4g0434281 RchiOBHm_Chr4g0437231 RchiOBHm_Chr4g0439261 RchiOBHm_Chr5g0000531 RchiOBHm_Chr5g0016091 RchiOBHm_Chr5g0018801 RchiOBHm_Chr5g0026401 RchiOBHm_Chr5g0051821 RchiOBHm_Chr5g0062261 RchiOBHm_Chr5g0070711 RchiOBHm_Chr5g0074731 RchiOBHm_Chr5g0077831 RchiOBHm_Chr6g0251621 RchiOBHm_Chr6g0253181 RchiOBHm_Chr6g0258241 RchiOBHm_Chr6g0259301 RchiOBHm_Chr6g0263381 RchiOBHm_Chr6g0264461 RchiOBHm_Chr6g0278601 RchiOBHm_Chr6g0299951 RchiOBHm_Chr7g0184971 RchiOBHm_Chr7g0185631 RchiOBHm_Chr7g0200601 RchiOBHm_Chr7g0206171 RchiOBHm_Chr7g0222341 RchiOBHm_Chr7g0237631
rosa_laevigata RLG00000012173 RLG00000021075
rosa_multiflora Rmu_co8065174.1_g000001 Rmu_co8074360.1_g000001 Rmu_co8095164.1_g000001 Rmu_co8204978.1_g000001 Rmu_co8329721.1_g000001 Rmu_co8347171.1_g000001 Rmu_co8395661.1_g000001 Rmu_co8466967.1_g000001 Rmu_sc0000030.1_g000008 Rmu_sc0000290.1_g000015 Rmu_sc0000294.1_g000012 Rmu_sc0000319.1_g000020 Rmu_sc0000418.1_g000014 Rmu_sc0000423.1_g000010 Rmu_sc0000427.1_g000013 Rmu_sc0000430.1_g000011 Rmu_sc0000487.1_g000037 Rmu_sc0000765.1_g000028 Rmu_sc0000770.1_g000037 Rmu_sc0000785.1_g000011 Rmu_sc0000811.1_g000011 Rmu_sc0000848.1_g000004 Rmu_sc0000897.1_g000007 Rmu_sc0000955.1_g000014 Rmu_sc0001004.1_g000019 Rmu_sc0001010.1_g000068 Rmu_sc0001021.1_g000008 Rmu_sc0001084.1_g000013 Rmu_sc0001111.1_g000002 Rmu_sc0001190.1_g000015 Rmu_sc0001308.1_g000013 Rmu_sc0001398.1_g000010 Rmu_sc0001680.1_g000005 Rmu_sc0001926.1_g000017 Rmu_sc0001942.1_g000074 Rmu_sc0002068.1_g000010 Rmu_sc0002113.1_g000019 Rmu_sc0002299.1_g000032 Rmu_sc0002531.1_g000026 Rmu_sc0002549.1_g000005 Rmu_sc0002634.1_g000001 Rmu_sc0002640.1_g000014 Rmu_sc0002831.1_g000005 Rmu_sc0002848.1_g000018 Rmu_sc0003005.1_g000027 Rmu_sc0003076.1_g000012 Rmu_sc0003124.1_g000001 Rmu_sc0003143.1_g000004 Rmu_sc0003143.1_g000005 Rmu_sc0003143.1_g000006 Rmu_sc0003302.1_g000009 Rmu_sc0003368.1_g000035 Rmu_sc0003462.1_g000001 Rmu_sc0003692.1_g000016 Rmu_sc0003855.1_g000007 Rmu_sc0003858.1_g000008 Rmu_sc0004277.1_g000031 Rmu_sc0004732.1_g000013 Rmu_sc0004748.1_g000005 Rmu_sc0005091.1_g000024 Rmu_sc0005124.1_g000001 Rmu_sc0005167.1_g000001 Rmu_sc0005242.1_g000003 Rmu_sc0005486.1_g000005 Rmu_sc0005597.1_g000008 Rmu_sc0005653.1_g000004 Rmu_sc0006080.1_g000016 Rmu_sc0006371.1_g000003 Rmu_sc0006415.1_g000001 Rmu_sc0006522.1_g000003 Rmu_sc0006596.1_g000007 Rmu_sc0006991.1_g000005 Rmu_sc0007070.1_g000004 Rmu_sc0007737.1_g000005 Rmu_sc0007856.1_g000001 Rmu_sc0008241.1_g000001 Rmu_sc0008393.1_g000006 Rmu_sc0008563.1_g000008 Rmu_sc0008904.1_g000006 Rmu_sc0010313.1_g000014 Rmu_sc0010693.1_g000002 Rmu_sc0010917.1_g000011 Rmu_sc0011232.1_g000003 Rmu_sc0011978.1_g000005 Rmu_sc0012782.1_g000003 Rmu_sc0013716.1_g000002 Rmu_sc0015429.1_g000002 Rmu_sc0015649.1_g000014 Rmu_sc0021955.1_g000004 Rmu_sc0024117.1_g000001 Rmu_sc0024816.1_g000001 Rmu_sc0024816.1_g000006 Rmu_sc0026593.1_g000003 Rmu_sc0028245.1_g000001 Rmu_sc0029783.1_g000006 Rmu_sc0030817.1_g000001 Rmu_sc0031096.1_g000001 Rmu_sc0034014.1_g000001 Rmu_sc0036569.1_g000001 Rmu_sc0039034.1_g000001 Rmu_ssc0000004.1_g000015 Rmu_ssc0000053.1_g000002 Rmu_ssc0000126.1_g000069 Rmu_ssc0000211.1_g000020 Rmu_ssc0000295.1_g000005 Rmu_ssc0000359.1_g000057 Rmu_ssc0000385.1_g000011 Rmu_ssc0000416.1_g000004 Rmu_ssc0000434.1_g000018
rosa_roxburghii Rroxscaffold_159G00432920 Rroxscaffold_2G00091500 Rroxscaffold_2G00123510 Rroxscaffold_2G00124730 Rroxscaffold_2G00126030 Rroxscaffold_2G00138160 Rroxscaffold_2G00153260 Rroxscaffold_3G00224470 Rroxscaffold_3G00244670 Rroxscaffold_3G00261920 Rroxscaffold_3G00264150 Rroxscaffold_3G00270420 Rroxscaffold_4G00285150 Rroxscaffold_4G00299830 Rroxscaffold_4G00311290 Rroxscaffold_4G00323970 Rroxscaffold_5G00374550 Rroxscaffold_6G00427060 Rroxscaffold_7G00169160 Rroxscaffold_7G00174970
rosa_rugosa Rorug01G0012500 Rorug01G0046200 Rorug01G0118800 Rorug01G0120200 Rorug01G0135400.1 Rorug01G0174200 Rorug01G0204600 Rorug01G0253500 Rorug01G0290500 Rorug01G0290800 Rorug01G0312100 Rorug01G0333700 Rorug01G0339600 Rorug01G0377800 Rorug01G0400400 Rorug01G0402200 Rorug01G0410700 Rorug01G0431400 Rorug02G0011900 Rorug02G0012500 Rorug02G0022300 Rorug02G0062400 Rorug02G0085300 Rorug02G0091800 Rorug02G0104500 Rorug02G0125400 Rorug02G0131000 Rorug02G0147300 Rorug02G0171000 Rorug02G0181500 Rorug02G0196900 Rorug02G0207200 Rorug02G0226600 Rorug02G0241300 Rorug02G0274300 Rorug02G0280600 Rorug02G0280800 Rorug02G0304600 Rorug02G0304700 Rorug02G0338800 Rorug02G0375800 Rorug02G0379300 Rorug02G0379400 Rorug02G0447600 Rorug02G0459900 Rorug02G0467200 Rorug02G0535400 Rorug03G0072300 Rorug03G0218900 Rorug03G0223700 Rorug03G0231500 Rorug03G0257200 Rorug03G0257300 Rorug03G0257400 Rorug03G0265700 Rorug03G0290200 Rorug03G0291300 Rorug03G0311000 Rorug03G0326900 Rorug03G0332700 Rorug03G0352000 Rorug03G0369700.1 Rorug04G0014000 Rorug04G0014500 Rorug04G0124100 Rorug04G0142100 Rorug04G0151400 Rorug04G0160700 Rorug04G0186400 Rorug04G0227600 Rorug04G0253800 Rorug04G0274400 Rorug04G0274600 Rorug04G0295600 Rorug04G0302000 Rorug04G0320600 Rorug04G0331300 Rorug04G0352200 Rorug04G0407000 Rorug04G0430300 Rorug04G0443000 Rorug04G0446400 Rorug04G0459000 Rorug05G0042400 Rorug05G0042500 Rorug05G0064900 Rorug05G0074300 Rorug05G0097700 Rorug05G0102300 Rorug05G0102300 Rorug05G0123700 Rorug05G0145800 Rorug05G0152900 Rorug05G0175900 Rorug05G0182100 Rorug05G0196000 Rorug05G0207000 Rorug05G0212800 Rorug05G0226400 Rorug05G0241500 Rorug05G0264800.1 Rorug05G0269600 Rorug05G0298200 Rorug05G0304300 Rorug05G0344300 Rorug05G0382300 Rorug05G0392300.1 Rorug05G0427900 Rorug05G0433500 Rorug05G0452700 Rorug05G0464600 Rorug05G0475800 Rorug05G0488600 Rorug05G0493000 Rorug05G0504800 Rorug05G0505500.1 Rorug05G0508400 Rorug05G0545800 Rorug05G0587000 Rorug05G0591100.1 Rorug06G0013200 Rorug06G0037700 Rorug06G0098200 Rorug06G0184500 Rorug06G0185300 Rorug06G0188200 Rorug06G0208300 Rorug06G0212900 Rorug06G0251500 Rorug06G0328000 Rorug06G0366100 Rorug06G0367400 Rorug06G0371200 Rorug06G0393500 Rorug06G0423000 Rorug06G0440500 Rorug06G0445400 Rorug06G0451700 Rorug06G0479400 Rorug06G0479500 Rorug06G0479600 Rorug06G0479700 Rorug06G0479800 Rorug06G0483100 Rorug07G0001200 Rorug07G0005200 Rorug07G0068600 Rorug07G0109300 Rorug07G0115500 Rorug07G0117000 Rorug07G0123500 Rorug07G0128000 Rorug07G0128100 Rorug07G0225500 Rorug07G0280200 Rorug07G0317300
rosa_samantha Rh1AG251400 Rh1BG133300 Rh1CG079900 Rh1CG235600 Rh1DG168000 Rh2AG533100 Rh2BG546900 Rh2CG517000 Rh2DG237900 Rh2DG555900 Rh3CG293400 Rh4AG419800 Rh4BG306300 Rh4CG446100 Rh5AG268900 Rh5AG282600 Rh5BG006600 Rh5BG345700 Rh5CG468100 Rh6CG190700 Rh6DG111900 Rh7BG172200 Rh7BG412200
rosa_wichuraiana Rw0G003620 Rw0G004000 Rw0G011770 Rw0G019070 Rw0G020070 Rw1G002990 Rw1G003550 Rw1G003860 Rw1G005930 Rw1G018430 Rw1G021160 Rw1G023820 Rw1G032700 Rw1G035790 Rw1G036160 Rw1G038660 Rw1G039380 Rw2G016120 Rw2G018680 Rw2G026860 Rw2G028670 Rw2G040870 Rw2G041040 Rw2G041410 Rw2G044140 Rw2G047570 Rw3G019760 Rw4G031020 Rw5G003700 Rw5G004830 Rw5G037470 Rw5G047400 Rw6G020150 Rw6G024010 Rw6G026600 Rw7G002480 Rw7G004430 Rw7G011870 Rw7G035520 Rw7G041260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 85, 699
AccB1I GGYRCC 1 cut(s) 210
AccB7I CCANNNNNTGG 1 cut(s) 874
AccBSI CCGCTC 1 cut(s) 72
AccII CGCG 2 cut(s) 407, 409
AciI CCGC 8 cut(s) 70, 278, 288, 308, 365, 409, 754, 884
AclWI GGATC 2 cut(s) 481, 646
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 1 cut(s) 421
AfaI GTAC 4 cut(s) 123, 352, 520, 794
AfiI CCNNNNNNNGG 7 cut(s) 84, 90, 340, 408, 409, 603, 874
AgsI TTSAA 2 cut(s) 38, 434
AjiI CACGTC 1 cut(s) 62
AjnI CCWGG 2 cut(s) 83, 112
AluBI AGCT 4 cut(s) 104, 185, 339, 370
AluI AGCT 4 cut(s) 104, 185, 339, 370
Alw21I GWGCWC 2 cut(s) 106, 372
Alw26I GTCTC 2 cut(s) 68, 157
AlwI GGATC 2 cut(s) 481, 646
AoxI GGCC 6 cut(s) 81, 115, 250, 343, 399, 880
ApoI RAATTY 1 cut(s) 421
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 4 cut(s) 272, 343, 400, 881
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 3 cut(s) 100, 920, 926
AvaII GGWCC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 117
BanI GGYRCC 1 cut(s) 210
BanII GRGCYC 2 cut(s) 106, 372
BarI GAAGNNNNNNTAC 2 cut(s) 172, 204
Bbv12I GWGCWC 2 cut(s) 106, 372
BccI CCATC 3 cut(s) 242, 354, 872
BciT130I CCWGG 2 cut(s) 85, 114
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 2 cut(s) 68, 157
BfaI CTAG 2 cut(s) 758, 946
BfmI CTRYAG 1 cut(s) 694
BfuAI ACCTGC 2 cut(s) 85, 699
BisI GCNGC 2 cut(s) 70, 279
BlsI GCNGC 2 cut(s) 71, 280
Bme1390I CCNGG 3 cut(s) 85, 114, 270
Bme18I GGWCC 1 cut(s) 272
BmgBI CACGTC 1 cut(s) 62
BmgT120I GGNCC 4 cut(s) 272, 343, 400, 881
BmiI GGNNCC 2 cut(s) 212, 273
BmrFI CCNGG 3 cut(s) 85, 114, 270
BmsI GCATC 1 cut(s) 6
BpmI CTGGAG 2 cut(s) 482, 840
Bpu10I CCTNAGC 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 650
BsaJI CCNNGG 3 cut(s) 78, 112, 488
Bsc4I CCNNNNNNNGG 7 cut(s) 84, 90, 340, 408, 409, 603, 874
Bse8I GATNNNNATC 1 cut(s) 650
BseBI CCWGG 2 cut(s) 85, 114
BseDI CCNNGG 3 cut(s) 78, 112, 488
BseGI GGATG 2 cut(s) 381, 883
BseJI GATNNNNATC 1 cut(s) 650
BseLI CCNNNNNNNGG 7 cut(s) 84, 90, 340, 408, 409, 603, 874
BseMII CTCAG 1 cut(s) 684
BseRI GAGGAG 6 cut(s) 630, 883, 897, 900, 903, 906
BsgI GTGCAG 1 cut(s) 650
Bsh1236I CGCG 2 cut(s) 407, 409
BshFI GGCC 6 cut(s) 83, 117, 252, 345, 401, 882
BshNI GGYRCC 1 cut(s) 210
BsiHKAI GWGCWC 2 cut(s) 106, 372
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 2 cut(s) 182, 789
BslI CCNNNNNNNGG 7 cut(s) 84, 90, 340, 408, 409, 603, 874
BsmAI GTCTC 2 cut(s) 68, 157
BsmBI CGTCTC 1 cut(s) 68
BsmFI GGGAC 2 cut(s) 182, 789
BsmI GAATGC 1 cut(s) 631
BsnI GGCC 6 cut(s) 83, 117, 252, 345, 401, 882
Bsp1286I GDGCHC 2 cut(s) 106, 372
Bsp143I GATC 2 cut(s) 473, 651
BspACI CCGC 8 cut(s) 70, 278, 288, 308, 365, 409, 754, 884
BspANI GGCC 6 cut(s) 83, 117, 252, 345, 401, 882
BspCNI CTCAG 1 cut(s) 683
BspFNI CGCG 2 cut(s) 407, 409
BspLI GGNNCC 2 cut(s) 212, 273
BspMI ACCTGC 2 cut(s) 85, 699
BspPI GGATC 2 cut(s) 481, 646
BspT107I GGYRCC 1 cut(s) 210
BsrBI CCGCTC 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 78, 112, 488
BssMI GATC 2 cut(s) 473, 651
BssT1I CCWWGG 1 cut(s) 488
Bst2UI CCWGG 2 cut(s) 85, 114
Bst4CI ACNGT 3 cut(s) 698, 797, 874
Bst6I CTCTTC 1 cut(s) 448
BstC8I GCNNGC 3 cut(s) 416, 686, 884
BstDEI CTNAG 2 cut(s) 335, 670
BstENI CCTNNNNNAGG 1 cut(s) 88
BstF5I GGATG 2 cut(s) 381, 883
BstFNI CGCG 2 cut(s) 407, 409
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 2 cut(s) 476, 654
BstMAI GTCTC 2 cut(s) 68, 157
BstMBI GATC 2 cut(s) 473, 651
BstMWI GCNNNNNNNGC 1 cut(s) 415
BstNI CCWGG 2 cut(s) 85, 114
BstNSI RCATGY 2 cut(s) 285, 688
BstSCI CCNGG 3 cut(s) 83, 112, 268
BstSFI CTRYAG 1 cut(s) 694
BstUI CGCG 2 cut(s) 407, 409
BstX2I RGATCY 2 cut(s) 473, 651
BstYI RGATCY 2 cut(s) 473, 651
BsuRI GGCC 6 cut(s) 83, 117, 252, 345, 401, 882
BtrI CACGTC 1 cut(s) 62
BtsCI GGATG 2 cut(s) 381, 883
BtsIMutI CAGTG 1 cut(s) 879
BveI ACCTGC 2 cut(s) 85, 699
Cac8I GCNNGC 3 cut(s) 416, 686, 884
CfoI GCGC 1 cut(s) 409
Cfr13I GGNCC 4 cut(s) 272, 343, 400, 881
Csp6I GTAC 4 cut(s) 122, 351, 519, 793
CviAII CATG 6 cut(s) 119, 282, 374, 459, 538, 685
CviQI GTAC 4 cut(s) 122, 351, 519, 793
DdeI CTNAG 2 cut(s) 335, 670
DpnI GATC 2 cut(s) 475, 653
DpnII GATC 2 cut(s) 473, 651
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 448
EarI CTCTTC 1 cut(s) 448
EciI GGCGGA 1 cut(s) 743
Ecl136II GAGCTC 2 cut(s) 104, 370
Eco130I CCWWGG 1 cut(s) 488
Eco24I GRGCYC 2 cut(s) 106, 372
Eco47I GGWCC 1 cut(s) 272
Eco53kI GAGCTC 2 cut(s) 104, 370
EcoICRI GAGCTC 2 cut(s) 104, 370
EcoNI CCTNNNNNAGG 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 83, 112
EcoT14I CCWWGG 1 cut(s) 488
EcoT38I GRGCYC 2 cut(s) 106, 372
ErhI CCWWGG 1 cut(s) 488
Esp3I CGTCTC 1 cut(s) 68
FaeI CATG 6 cut(s) 122, 285, 377, 462, 541, 688
FalI AAGNNNNNCTT 2 cut(s) 427, 459
FaqI GGGAC 2 cut(s) 182, 789
FatI CATG 6 cut(s) 118, 281, 373, 458, 537, 684
FauI CCCGC 4 cut(s) 281, 301, 402, 891
Fnu4HI GCNGC 2 cut(s) 70, 279
FokI GGATG 2 cut(s) 368, 890
FriOI GRGCYC 2 cut(s) 106, 372
Fsp4HI GCNGC 2 cut(s) 70, 279
FspBI CTAG 2 cut(s) 758, 946
GlaI GCGC 1 cut(s) 408
GluI GCNGC 2 cut(s) 70, 279
GsuI CTGGAG 2 cut(s) 482, 840
HaeIII GGCC 6 cut(s) 83, 117, 252, 345, 401, 882
HapII CCGG 1 cut(s) 269
HhaI GCGC 1 cut(s) 409
Hin1II CATG 6 cut(s) 122, 285, 377, 462, 541, 688
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HindIII AAGCTT 1 cut(s) 337
HinfI GANTC 3 cut(s) 302, 440, 851
HpaII CCGG 1 cut(s) 269
HphI GGTGA 3 cut(s) 100, 920, 926
Hpy188I TCNGA 2 cut(s) 645, 673
Hpy188III TCNNGA 4 cut(s) 299, 471, 499, 566
HpyAV CCTTC 3 cut(s) 32, 198, 941
HpyCH4III ACNGT 3 cut(s) 698, 797, 874
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 3 cut(s) 532, 667, 708
HpyF10VI GCNNNNNNNGC 1 cut(s) 415
HpyF3I CTNAG 2 cut(s) 335, 670
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 6 cut(s) 122, 285, 377, 462, 541, 688
HspAI GCGC 1 cut(s) 407
Kzo9I GATC 2 cut(s) 473, 651
LmnI GCTCC 6 cut(s) 77, 101, 190, 367, 375, 501
LweI GCATC 1 cut(s) 6
MaeI CTAG 2 cut(s) 758, 946
MaeII ACGT 1 cut(s) 61
MalI GATC 2 cut(s) 475, 653
MbiI CCGCTC 1 cut(s) 72
MboI GATC 2 cut(s) 473, 651
MboII GAAGA 3 cut(s) 25, 435, 609
MfeI CAATTG 1 cut(s) 514
MflI RGATCY 2 cut(s) 473, 651
MhlI GDGCHC 2 cut(s) 106, 372
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 5 cut(s) 395, 421, 514, 590, 598
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 1 cut(s) 79
Mox20I TGGCCA 1 cut(s) 117
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 723
Msp20I TGGCCA 1 cut(s) 117
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 3 cut(s) 85, 114, 270
MunI CAATTG 1 cut(s) 514
Mva1269I GAATGC 1 cut(s) 631
MvaI CCWGG 2 cut(s) 85, 114
MvnI CGCG 2 cut(s) 407, 409
MwoI GCNNNNNNNGC 1 cut(s) 415
NciI CCSGG 1 cut(s) 270
NdeII GATC 2 cut(s) 473, 651
NlaIII CATG 6 cut(s) 122, 285, 377, 462, 541, 688
NlaIV GGNNCC 2 cut(s) 212, 273
NmeAIII GCCGAG 1 cut(s) 59
NspI RCATGY 2 cut(s) 285, 688
PaeI GCATGC 1 cut(s) 688
PctI GAATGC 1 cut(s) 631
PfeI GAWTC 2 cut(s) 302, 851
PflMI CCANNNNNTGG 1 cut(s) 874
PkrI GCNGC 2 cut(s) 71, 280
PleI GAGTC 1 cut(s) 434
PpsI GAGTC 1 cut(s) 434
PpuMI RGGWCCY 1 cut(s) 272
Psp124BI GAGCTC 2 cut(s) 106, 372
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 2 cut(s) 83, 112
PspGI CCWGG 2 cut(s) 83, 112
PspN4I GGNNCC 2 cut(s) 212, 273
PspPI GGNCC 4 cut(s) 272, 343, 400, 881
PspPPI RGGWCCY 1 cut(s) 272
PsuI RGATCY 2 cut(s) 473, 651
RsaI GTAC 4 cut(s) 123, 352, 520, 794
RsaNI GTAC 4 cut(s) 122, 351, 519, 793
SacI GAGCTC 2 cut(s) 106, 372
SaqAI TTAA 1 cut(s) 723
SatI GCNGC 2 cut(s) 70, 279
Sau3AI GATC 2 cut(s) 473, 651
Sau96I GGNCC 4 cut(s) 272, 343, 400, 881
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 3 cut(s) 85, 114, 270
SduI GDGCHC 2 cut(s) 106, 372
SfaNI GCATC 1 cut(s) 6
SfcI CTRYAG 1 cut(s) 694
SinI GGWCC 1 cut(s) 272
SphI GCATGC 1 cut(s) 688
Sse9I AATT 5 cut(s) 395, 421, 514, 590, 598
SsiI CCGC 8 cut(s) 70, 278, 288, 308, 365, 409, 754, 884
SspMI CTAG 2 cut(s) 758, 946
SstI GAGCTC 2 cut(s) 106, 372
StyD4I CCNGG 3 cut(s) 83, 112, 268
StyI CCWWGG 1 cut(s) 488
TaaI ACNGT 3 cut(s) 698, 797, 874
TaiI ACGT 1 cut(s) 64
TaqI TCGA 4 cut(s) 298, 393, 446, 565
TasI AATT 5 cut(s) 395, 421, 514, 590, 598
TatI WGTACW 1 cut(s) 518
TauI GCSGC 2 cut(s) 72, 281
TfiI GAWTC 2 cut(s) 302, 851
Tru1I TTAA 1 cut(s) 723
Tru9I TTAA 1 cut(s) 723
TscAI CASTG 1 cut(s) 879
TspRI CASTG 1 cut(s) 879
Van91I CCANNNNNTGG 1 cut(s) 874
VpaK11BI GGWCC 1 cut(s) 272
XagI CCTNNNNNAGG 1 cut(s) 88
XapI RAATTY 1 cut(s) 421
XceI RCATGY 2 cut(s) 285, 688
XcmI CCANNNNNNNNNTGG 1 cut(s) 875
XspI CTAG 2 cut(s) 758, 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.