Reverse transcriptase (RNA-dependent DNA polymerase)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 574 |
| AciI | CCGC | 2 cut(s) | 293, 557 |
| AclWI | GGATC | 3 cut(s) | 379, 566, 579 |
| AcsI | RAATTY | 1 cut(s) | 286 |
| AcuI | CTGAAG | 2 cut(s) | 222, 522 |
| AfaI | GTAC | 1 cut(s) | 413 |
| AgeI | ACCGGT | 1 cut(s) | 130 |
| AgsI | TTSAA | 2 cut(s) | 212, 477 |
| AjiI | CACGTC | 1 cut(s) | 98 |
| AjnI | CCWGG | 2 cut(s) | 111, 586 |
| AleI | CACNNNNGTG | 1 cut(s) | 557 |
| AluBI | AGCT | 2 cut(s) | 208, 337 |
| AluI | AGCT | 2 cut(s) | 208, 337 |
| Alw21I | GWGCWC | 1 cut(s) | 586 |
| Alw26I | GTCTC | 2 cut(s) | 361, 626 |
| AlwI | GGATC | 3 cut(s) | 379, 566, 579 |
| Aor13HI | TCCGGA | 1 cut(s) | 574 |
| AoxI | GGCC | 1 cut(s) | 59 |
| ApoI | RAATTY | 1 cut(s) | 286 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 600, 632 |
| AsiGI | ACCGGT | 1 cut(s) | 130 |
| AspA2I | CCTAGG | 1 cut(s) | 56 |
| AspS9I | GGNCC | 1 cut(s) | 590 |
| AsuHPI | GGTGA | 3 cut(s) | 182, 379, 571 |
| AvaII | GGWCC | 1 cut(s) | 590 |
| AvrII | CCTAGG | 1 cut(s) | 56 |
| BamHI | GGATCC | 1 cut(s) | 571 |
| BbsI | GAAGAC | 1 cut(s) | 113 |
| Bbv12I | GWGCWC | 1 cut(s) | 586 |
| BccI | CCATC | 3 cut(s) | 113, 137, 590 |
| BciT130I | CCWGG | 2 cut(s) | 113, 588 |
| BciVI | GTATCC | 1 cut(s) | 454 |
| BclI | TGATCA | 2 cut(s) | 369, 442 |
| BcoDI | GTCTC | 2 cut(s) | 361, 626 |
| BfaI | CTAG | 1 cut(s) | 57 |
| BfuI | GTATCC | 1 cut(s) | 454 |
| BlnI | CCTAGG | 1 cut(s) | 56 |
| BlpI | GCTNAGC | 1 cut(s) | 204 |
| Bme1390I | CCNGG | 2 cut(s) | 113, 588 |
| Bme18I | GGWCC | 1 cut(s) | 590 |
| BmgBI | CACGTC | 1 cut(s) | 98 |
| BmgT120I | GGNCC | 1 cut(s) | 590 |
| BmiI | GGNNCC | 1 cut(s) | 573 |
| BmrFI | CCNGG | 2 cut(s) | 113, 588 |
| BmsI | GCATC | 1 cut(s) | 181 |
| BpiI | GAAGAC | 1 cut(s) | 113 |
| BpmI | CTGGAG | 1 cut(s) | 570 |
| Bpu10I | CCTNAGC | 1 cut(s) | 264 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 204 |
| BsaBI | GATNNNNATC | 1 cut(s) | 195 |
| BsaI | GGTCTC | 1 cut(s) | 361 |
| BsaJI | CCNNGG | 2 cut(s) | 56, 111 |
| BsaWI | WCCGGW | 2 cut(s) | 130, 574 |
| Bse118I | RCCGGY | 1 cut(s) | 130 |
| Bse1I | ACTGG | 2 cut(s) | 469, 498 |
| Bse3DI | GCAATG | 1 cut(s) | 228 |
| Bse8I | GATNNNNATC | 1 cut(s) | 195 |
| BseAI | TCCGGA | 1 cut(s) | 574 |
| BseBI | CCWGG | 2 cut(s) | 113, 588 |
| BseDI | CCNNGG | 2 cut(s) | 56, 111 |
| BseGI | GGATG | 2 cut(s) | 105, 148 |
| BseJI | GATNNNNATC | 1 cut(s) | 195 |
| BseMI | GCAATG | 1 cut(s) | 228 |
| BseMII | CTCAG | 2 cut(s) | 195, 372 |
| BseNI | ACTGG | 2 cut(s) | 469, 498 |
| BseRI | GAGGAG | 1 cut(s) | 557 |
| BshFI | GGCC | 1 cut(s) | 61 |
| BshTI | ACCGGT | 1 cut(s) | 130 |
| BsiHKAI | GWGCWC | 1 cut(s) | 586 |
| BsiSI | CCGG | 2 cut(s) | 131, 575 |
| BsmAI | GTCTC | 2 cut(s) | 361, 626 |
| BsnI | GGCC | 1 cut(s) | 61 |
| Bso31I | GGTCTC | 1 cut(s) | 361 |
| Bsp1286I | GDGCHC | 1 cut(s) | 586 |
| Bsp13I | TCCGGA | 1 cut(s) | 574 |
| Bsp143I | GATC | 4 cut(s) | 369, 384, 442, 571 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 204 |
| BspACI | CCGC | 2 cut(s) | 293, 557 |
| BspANI | GGCC | 1 cut(s) | 61 |
| BspCNI | CTCAG | 2 cut(s) | 196, 371 |
| BspEI | TCCGGA | 1 cut(s) | 574 |
| BspLI | GGNNCC | 1 cut(s) | 573 |
| BspPI | GGATC | 3 cut(s) | 379, 566, 579 |
| BspTNI | GGTCTC | 1 cut(s) | 361 |
| BsrDI | GCAATG | 1 cut(s) | 228 |
| BsrFI | RCCGGY | 1 cut(s) | 130 |
| BsrI | ACTGG | 2 cut(s) | 469, 498 |
| BssAI | RCCGGY | 1 cut(s) | 130 |
| BssECI | CCNNGG | 2 cut(s) | 56, 111 |
| BssMI | GATC | 4 cut(s) | 369, 384, 442, 571 |
| BssT1I | CCWWGG | 1 cut(s) | 56 |
| Bst2UI | CCWGG | 2 cut(s) | 113, 588 |
| BstC8I | GCNNGC | 1 cut(s) | 282 |
| BstDEI | CTNAG | 3 cut(s) | 204, 264, 358 |
| BstF5I | GGATG | 2 cut(s) | 105, 148 |
| BstKTI | GATC | 4 cut(s) | 372, 387, 445, 574 |
| BstMAI | GTCTC | 2 cut(s) | 361, 626 |
| BstMBI | GATC | 4 cut(s) | 369, 384, 442, 571 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 200, 290, 563 |
| BstNI | CCWGG | 2 cut(s) | 113, 588 |
| BstSCI | CCNGG | 2 cut(s) | 111, 586 |
| BstV2I | GAAGAC | 1 cut(s) | 113 |
| BstX2I | RGATCY | 1 cut(s) | 571 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 112 |
| BstYI | RGATCY | 1 cut(s) | 571 |
| BsuI | GTATCC | 1 cut(s) | 454 |
| BsuRI | GGCC | 1 cut(s) | 61 |
| BtrI | CACGTC | 1 cut(s) | 98 |
| BtsCI | GGATG | 2 cut(s) | 105, 148 |
| BtsIMutI | CAGTG | 1 cut(s) | 491 |
| Cac8I | GCNNGC | 1 cut(s) | 282 |
| Cfr10I | RCCGGY | 1 cut(s) | 130 |
| Cfr13I | GGNCC | 1 cut(s) | 590 |
| Csp6I | GTAC | 1 cut(s) | 412 |
| CspAI | ACCGGT | 1 cut(s) | 130 |
| CviAII | CATG | 6 cut(s) | 200, 301, 311, 352, 406, 449 |
| CviJI | RGCY | 5 cut(s) | 11, 61, 208, 337, 566 |
| CviKI_1 | RGCY | 5 cut(s) | 11, 61, 208, 337, 566 |
| CviQI | GTAC | 1 cut(s) | 412 |
| DdeI | CTNAG | 3 cut(s) | 204, 264, 358 |
| DpnI | GATC | 4 cut(s) | 371, 386, 444, 573 |
| DpnII | GATC | 4 cut(s) | 369, 384, 442, 571 |
| EciI | GGCGGA | 1 cut(s) | 308 |
| Eco130I | CCWWGG | 1 cut(s) | 56 |
| Eco147I | AGGCCT | 1 cut(s) | 61 |
| Eco31I | GGTCTC | 1 cut(s) | 361 |
| Eco47I | GGWCC | 1 cut(s) | 590 |
| Eco57I | CTGAAG | 2 cut(s) | 222, 522 |
| EcoRII | CCWGG | 2 cut(s) | 111, 586 |
| EcoT14I | CCWWGG | 1 cut(s) | 56 |
| ErhI | CCWWGG | 1 cut(s) | 56 |
| FaeI | CATG | 6 cut(s) | 203, 304, 314, 355, 409, 452 |
| FatI | CATG | 6 cut(s) | 199, 300, 310, 351, 405, 448 |
| FbaI | TGATCA | 2 cut(s) | 369, 442 |
| FokI | GGATG | 2 cut(s) | 92, 155 |
| FspBI | CTAG | 1 cut(s) | 57 |
| GsuI | CTGGAG | 1 cut(s) | 570 |
| HaeIII | GGCC | 1 cut(s) | 61 |
| HapII | CCGG | 2 cut(s) | 131, 575 |
| Hin1II | CATG | 6 cut(s) | 203, 304, 314, 355, 409, 452 |
| HinfI | GANTC | 6 cut(s) | 16, 296, 314, 327, 402, 430 |
| HpaII | CCGG | 2 cut(s) | 131, 575 |
| HphI | GGTGA | 3 cut(s) | 182, 379, 571 |
| Hpy188I | TCNGA | 4 cut(s) | 250, 332, 401, 541 |
| Hpy188III | TCNNGA | 3 cut(s) | 240, 575, 593 |
| HpyAV | CCTTC | 4 cut(s) | 111, 498, 543, 556 |
| HpyCH4IV | ACGT | 1 cut(s) | 97 |
| HpyCH4V | TGCA | 3 cut(s) | 27, 280, 310 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 200, 290, 563 |
| HpyF3I | CTNAG | 3 cut(s) | 204, 264, 358 |
| HpySE526I | ACGT | 1 cut(s) | 97 |
| Hsp92II | CATG | 6 cut(s) | 203, 304, 314, 355, 409, 452 |
| Kpn2I | TCCGGA | 1 cut(s) | 574 |
| Ksp22I | TGATCA | 2 cut(s) | 369, 442 |
| Kzo9I | GATC | 4 cut(s) | 369, 384, 442, 571 |
| LmnI | GCTCC | 1 cut(s) | 589 |
| LweI | GCATC | 1 cut(s) | 181 |
| MaeI | CTAG | 1 cut(s) | 57 |
| MaeII | ACGT | 1 cut(s) | 97 |
| MaeIII | GTNAC | 1 cut(s) | 496 |
| MalI | GATC | 4 cut(s) | 371, 386, 444, 573 |
| MboI | GATC | 4 cut(s) | 369, 384, 442, 571 |
| MboII | GAAGA | 2 cut(s) | 113, 528 |
| MfeI | CAATTG | 1 cut(s) | 28 |
| MflI | RGATCY | 1 cut(s) | 571 |
| MhlI | GDGCHC | 1 cut(s) | 586 |
| MluCI | AATT | 8 cut(s) | 28, 74, 154, 186, 221, 270, 286, 347 |
| MlyI | GAGTC | 2 cut(s) | 10, 323 |
| MnlI | CCTC | 7 cut(s) | 135, 236, 297, 357, 451, 496, 535 |
| MroI | TCCGGA | 1 cut(s) | 574 |
| MseI | TTAA | 2 cut(s) | 177, 603 |
| MslI | CAYNNNNRTG | 3 cut(s) | 305, 453, 557 |
| MspA1I | CMGCKG | 1 cut(s) | 557 |
| MspI | CCGG | 2 cut(s) | 131, 575 |
| MspR9I | CCNGG | 2 cut(s) | 113, 588 |
| MunI | CAATTG | 1 cut(s) | 28 |
| MvaI | CCWGG | 2 cut(s) | 113, 588 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 200, 290, 563 |
| NdeII | GATC | 4 cut(s) | 369, 384, 442, 571 |
| NlaIII | CATG | 6 cut(s) | 203, 304, 314, 355, 409, 452 |
| NlaIV | GGNNCC | 1 cut(s) | 573 |
| OliI | CACNNNNGTG | 1 cut(s) | 557 |
| PceI | AGGCCT | 1 cut(s) | 61 |
| PfeI | GAWTC | 4 cut(s) | 296, 327, 402, 430 |
| PflFI | GACNNNGTC | 1 cut(s) | 636 |
| PinAI | ACCGGT | 1 cut(s) | 130 |
| PleI | GAGTC | 2 cut(s) | 10, 322 |
| PpsI | GAGTC | 2 cut(s) | 10, 322 |
| Psp6I | CCWGG | 2 cut(s) | 111, 586 |
| PspGI | CCWGG | 2 cut(s) | 111, 586 |
| PspN4I | GGNNCC | 1 cut(s) | 573 |
| PspPI | GGNCC | 1 cut(s) | 590 |
| PsuI | RGATCY | 1 cut(s) | 571 |
| PsyI | GACNNNGTC | 1 cut(s) | 636 |
| RsaI | GTAC | 1 cut(s) | 413 |
| RsaNI | GTAC | 1 cut(s) | 412 |
| RseI | CAYNNNNRTG | 3 cut(s) | 305, 453, 557 |
| SaqAI | TTAA | 2 cut(s) | 177, 603 |
| Sau3AI | GATC | 4 cut(s) | 369, 384, 442, 571 |
| Sau96I | GGNCC | 1 cut(s) | 590 |
| SchI | GAGTC | 2 cut(s) | 10, 323 |
| ScrFI | CCNGG | 2 cut(s) | 113, 588 |
| SduI | GDGCHC | 1 cut(s) | 586 |
| SetI | ASST | 8 cut(s) | 58, 100, 210, 247, 339, 377, 507, 592 |
| SfaNI | GCATC | 1 cut(s) | 181 |
| SgrAI | CRCCGGYG | 1 cut(s) | 130 |
| SinI | GGWCC | 1 cut(s) | 590 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 305, 453, 557 |
| Sse9I | AATT | 8 cut(s) | 28, 74, 154, 186, 221, 270, 286, 347 |
| SseBI | AGGCCT | 1 cut(s) | 61 |
| SsiI | CCGC | 2 cut(s) | 293, 557 |
| SspMI | CTAG | 1 cut(s) | 57 |
| StuI | AGGCCT | 1 cut(s) | 61 |
| StyD4I | CCNGG | 2 cut(s) | 111, 586 |
| StyI | CCWWGG | 1 cut(s) | 56 |
| TaiI | ACGT | 1 cut(s) | 100 |
| TaqI | TCGA | 1 cut(s) | 380 |
| TasI | AATT | 8 cut(s) | 28, 74, 154, 186, 221, 270, 286, 347 |
| TatI | WGTACW | 1 cut(s) | 411 |
| TfiI | GAWTC | 4 cut(s) | 296, 327, 402, 430 |
| Tru1I | TTAA | 2 cut(s) | 177, 603 |
| Tru9I | TTAA | 2 cut(s) | 177, 603 |
| TscAI | CASTG | 1 cut(s) | 498 |
| TspDTI | ATGAA | 2 cut(s) | 340, 443 |
| TspRI | CASTG | 1 cut(s) | 498 |
| Tth111I | GACNNNGTC | 1 cut(s) | 636 |
| VpaK11BI | GGWCC | 1 cut(s) | 590 |
| XapI | RAATTY | 1 cut(s) | 286 |
| XmaJI | CCTAGG | 1 cut(s) | 56 |
| XspI | CTAG | 1 cut(s) | 57 |