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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 145 |
| AccB1I | GGYRCC | 2 cut(s) | 75, 145 |
| AccII | CGCG | 1 cut(s) | 186 |
| AciI | CCGC | 2 cut(s) | 117, 271 |
| AcoI | YGGCCR | 1 cut(s) | 114 |
| AcsI | RAATTY | 1 cut(s) | 101 |
| AcyI | GRCGYC | 1 cut(s) | 76 |
| AfaI | GTAC | 1 cut(s) | 147 |
| AfeI | AGCGCT | 1 cut(s) | 48 |
| AgsI | TTSAA | 2 cut(s) | 71, 101 |
| AluBI | AGCT | 2 cut(s) | 31, 237 |
| AluI | AGCT | 2 cut(s) | 31, 237 |
| Alw21I | GWGCWC | 1 cut(s) | 137 |
| Alw44I | GTGCAC | 1 cut(s) | 133 |
| Aor51HI | AGCGCT | 1 cut(s) | 48 |
| AoxI | GGCC | 3 cut(s) | 64, 114, 248 |
| ApaLI | GTGCAC | 1 cut(s) | 133 |
| ApeKI | GCWGC | 1 cut(s) | 234 |
| ApoI | RAATTY | 1 cut(s) | 101 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 66 |
| Asp718I | GGTACC | 1 cut(s) | 145 |
| AspLEI | GCGC | 2 cut(s) | 49, 78 |
| AspS9I | GGNCC | 1 cut(s) | 196 |
| AvaII | GGWCC | 1 cut(s) | 196 |
| BaeGI | GKGCMC | 3 cut(s) | 137, 167, 225 |
| BanI | GGYRCC | 2 cut(s) | 75, 145 |
| Bbv12I | GWGCWC | 1 cut(s) | 137 |
| BbvI | GCAGC | 1 cut(s) | 246 |
| BfoI | RGCGCY | 2 cut(s) | 50, 79 |
| BisI | GCNGC | 3 cut(s) | 117, 235, 271 |
| BlsI | GCNGC | 3 cut(s) | 118, 236, 272 |
| Bme18I | GGWCC | 1 cut(s) | 196 |
| BmgT120I | GGNCC | 1 cut(s) | 196 |
| BmiI | GGNNCC | 2 cut(s) | 77, 147 |
| BmrI | ACTGGG | 1 cut(s) | 115 |
| BmsI | GCATC | 1 cut(s) | 44 |
| BmuI | ACTGGG | 1 cut(s) | 115 |
| BoxI | GACNNNNGTC | 1 cut(s) | 201 |
| Bpu10I | CCTNAGC | 1 cut(s) | 175 |
| BpuEI | CTTGAG | 1 cut(s) | 101 |
| BsaHI | GRCGYC | 1 cut(s) | 76 |
| BsaWI | WCCGGW | 1 cut(s) | 142 |
| Bse1I | ACTGG | 2 cut(s) | 121, 218 |
| BseGI | GGATG | 1 cut(s) | 59 |
| BseMII | CTCAG | 1 cut(s) | 55 |
| BseNI | ACTGG | 2 cut(s) | 121, 218 |
| BseSI | GKGCMC | 3 cut(s) | 137, 167, 225 |
| BseXI | GCAGC | 1 cut(s) | 246 |
| Bsh1236I | CGCG | 1 cut(s) | 186 |
| BshFI | GGCC | 3 cut(s) | 66, 116, 250 |
| BshNI | GGYRCC | 2 cut(s) | 75, 145 |
| BsiHKAI | GWGCWC | 1 cut(s) | 137 |
| BsiSI | CCGG | 1 cut(s) | 143 |
| BsmI | GAATGC | 1 cut(s) | 36 |
| BsnI | GGCC | 3 cut(s) | 66, 116, 250 |
| Bsp1286I | GDGCHC | 3 cut(s) | 137, 167, 225 |
| Bsp68I | TCGCGA | 1 cut(s) | 186 |
| BspACI | CCGC | 2 cut(s) | 117, 271 |
| BspANI | GGCC | 3 cut(s) | 66, 116, 250 |
| BspCNI | CTCAG | 1 cut(s) | 54 |
| BspFNI | CGCG | 1 cut(s) | 186 |
| BspHI | TCATGA | 1 cut(s) | 87 |
| BspLI | GGNNCC | 2 cut(s) | 77, 147 |
| BspT107I | GGYRCC | 2 cut(s) | 75, 145 |
| BsrI | ACTGG | 2 cut(s) | 121, 218 |
| BssNI | GRCGYC | 1 cut(s) | 76 |
| Bst4CI | ACNGT | 2 cut(s) | 112, 132 |
| BstACI | GRCGYC | 1 cut(s) | 76 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 132 |
| BstDEI | CTNAG | 2 cut(s) | 41, 175 |
| BstF5I | GGATG | 1 cut(s) | 59 |
| BstFNI | CGCG | 1 cut(s) | 186 |
| BstH2I | RGCGCY | 2 cut(s) | 50, 79 |
| BstHHI | GCGC | 2 cut(s) | 49, 78 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 63, 132, 279 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 201 |
| BstSLI | GKGCMC | 3 cut(s) | 137, 167, 225 |
| BstUI | CGCG | 1 cut(s) | 186 |
| BstV1I | GCAGC | 1 cut(s) | 246 |
| BsuRI | GGCC | 3 cut(s) | 66, 116, 250 |
| BtsCI | GGATG | 1 cut(s) | 59 |
| BtsIMutI | CAGTG | 4 cut(s) | 108, 128, 137, 225 |
| BtuMI | TCGCGA | 1 cut(s) | 186 |
| CciI | TCATGA | 1 cut(s) | 87 |
| CfoI | GCGC | 2 cut(s) | 49, 78 |
| Cfr13I | GGNCC | 1 cut(s) | 196 |
| Csp6I | GTAC | 1 cut(s) | 146 |
| CviAII | CATG | 2 cut(s) | 58, 88 |
| CviJI | RGCY | 5 cut(s) | 31, 66, 116, 237, 250 |
| CviKI_1 | RGCY | 5 cut(s) | 31, 66, 116, 237, 250 |
| CviQI | GTAC | 1 cut(s) | 146 |
| DdeI | CTNAG | 2 cut(s) | 41, 175 |
| DinI | GGCGCC | 1 cut(s) | 77 |
| EaeI | YGGCCR | 1 cut(s) | 114 |
| Eco147I | AGGCCT | 1 cut(s) | 66 |
| Eco47I | GGWCC | 1 cut(s) | 196 |
| Eco47III | AGCGCT | 1 cut(s) | 48 |
| EcoT22I | ATGCAT | 1 cut(s) | 59 |
| EgeI | GGCGCC | 1 cut(s) | 77 |
| EheI | GGCGCC | 1 cut(s) | 77 |
| FaeI | CATG | 2 cut(s) | 61, 91 |
| FaiI | YATR | 4 cut(s) | 11, 59, 89, 160 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 63, 95 |
| FatI | CATG | 2 cut(s) | 57, 87 |
| Fnu4HI | GCNGC | 3 cut(s) | 117, 235, 271 |
| FokI | GGATG | 1 cut(s) | 66 |
| Fsp4HI | GCNGC | 3 cut(s) | 117, 235, 271 |
| GlaI | GCGC | 2 cut(s) | 48, 77 |
| GluI | GCNGC | 3 cut(s) | 117, 235, 271 |
| HaeII | RGCGCY | 2 cut(s) | 50, 79 |
| HaeIII | GGCC | 3 cut(s) | 66, 116, 250 |
| HapII | CCGG | 1 cut(s) | 143 |
| HhaI | GCGC | 2 cut(s) | 49, 78 |
| Hin1I | GRCGYC | 1 cut(s) | 76 |
| Hin1II | CATG | 2 cut(s) | 61, 91 |
| Hin6I | GCGC | 2 cut(s) | 47, 76 |
| HinP1I | GCGC | 2 cut(s) | 47, 76 |
| HinfI | GANTC | 2 cut(s) | 181, 202 |
| HpaII | CCGG | 1 cut(s) | 143 |
| Hpy166II | GTNNAC | 2 cut(s) | 135, 196 |
| Hpy188I | TCNGA | 3 cut(s) | 44, 215, 263 |
| Hpy188III | TCNNGA | 3 cut(s) | 88, 185, 254 |
| Hpy8I | GTNNAC | 2 cut(s) | 135, 196 |
| Hpy99I | CGWCG | 1 cut(s) | 234 |
| HpyAV | CCTTC | 3 cut(s) | 56, 77, 235 |
| HpyCH4III | ACNGT | 2 cut(s) | 112, 132 |
| HpyCH4V | TGCA | 4 cut(s) | 36, 57, 126, 135 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 63, 132, 279 |
| HpyF3I | CTNAG | 2 cut(s) | 41, 175 |
| Hsp92I | GRCGYC | 1 cut(s) | 76 |
| Hsp92II | CATG | 2 cut(s) | 61, 91 |
| HspAI | GCGC | 2 cut(s) | 47, 76 |
| KasI | GGCGCC | 1 cut(s) | 75 |
| KpnI | GGTACC | 1 cut(s) | 149 |
| LpnPI | CCDG | 5 cut(s) | 134, 151, 156, 212, 231 |
| Lsp1109I | GCAGC | 1 cut(s) | 246 |
| LweI | GCATC | 1 cut(s) | 44 |
| MfeI | CAATTG | 1 cut(s) | 21 |
| MhlI | GDGCHC | 3 cut(s) | 137, 167, 225 |
| MluCI | AATT | 4 cut(s) | 21, 101, 152, 265 |
| Mly113I | GGCGCC | 1 cut(s) | 76 |
| MlyI | GAGTC | 1 cut(s) | 211 |
| MnlI | CCTC | 3 cut(s) | 84, 261, 269 |
| Mph1103I | ATGCAT | 1 cut(s) | 59 |
| MroXI | GAANNNNTTC | 1 cut(s) | 66 |
| MseI | TTAA | 1 cut(s) | 14 |
| MspI | CCGG | 1 cut(s) | 143 |
| MunI | CAATTG | 1 cut(s) | 21 |
| Mva1269I | GAATGC | 1 cut(s) | 36 |
| MvnI | CGCG | 1 cut(s) | 186 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 63, 132, 279 |
| NarI | GGCGCC | 1 cut(s) | 76 |
| NlaIII | CATG | 2 cut(s) | 61, 91 |
| NlaIV | GGNNCC | 2 cut(s) | 77, 147 |
| NruI | TCGCGA | 1 cut(s) | 186 |
| NsiI | ATGCAT | 1 cut(s) | 59 |
| PagI | TCATGA | 1 cut(s) | 87 |
| PceI | AGGCCT | 1 cut(s) | 66 |
| PctI | GAATGC | 1 cut(s) | 36 |
| PdmI | GAANNNNTTC | 1 cut(s) | 66 |
| PfeI | GAWTC | 1 cut(s) | 181 |
| PkrI | GCNGC | 3 cut(s) | 118, 236, 272 |
| PleI | GAGTC | 1 cut(s) | 210 |
| PluTI | GGCGCC | 1 cut(s) | 79 |
| PpsI | GAGTC | 1 cut(s) | 210 |
| PshAI | GACNNNNGTC | 1 cut(s) | 201 |
| PspN4I | GGNNCC | 2 cut(s) | 77, 147 |
| PspPI | GGNCC | 1 cut(s) | 196 |
| RruI | TCGCGA | 1 cut(s) | 186 |
| RsaI | GTAC | 1 cut(s) | 147 |
| RsaNI | GTAC | 1 cut(s) | 146 |
| SaqAI | TTAA | 1 cut(s) | 14 |
| SatI | GCNGC | 3 cut(s) | 117, 235, 271 |
| Sau96I | GGNCC | 1 cut(s) | 196 |
| SchI | GAGTC | 1 cut(s) | 211 |
| SduI | GDGCHC | 3 cut(s) | 137, 167, 225 |
| SetI | ASST | 6 cut(s) | 33, 95, 140, 176, 239, 261 |
| SfaNI | GCATC | 1 cut(s) | 44 |
| SfoI | GGCGCC | 1 cut(s) | 77 |
| SinI | GGWCC | 1 cut(s) | 196 |
| SmlI | CTYRAG | 1 cut(s) | 80 |
| SmoI | CTYRAG | 1 cut(s) | 80 |
| Sse9I | AATT | 4 cut(s) | 21, 101, 152, 265 |
| SseBI | AGGCCT | 1 cut(s) | 66 |
| SsiI | CCGC | 2 cut(s) | 117, 271 |
| SspDI | GGCGCC | 1 cut(s) | 75 |
| StuI | AGGCCT | 1 cut(s) | 66 |
| TaaI | ACNGT | 2 cut(s) | 112, 132 |
| TaqI | TCGA | 1 cut(s) | 291 |
| TasI | AATT | 4 cut(s) | 21, 101, 152, 265 |
| TauI | GCSGC | 2 cut(s) | 119, 273 |
| TfiI | GAWTC | 1 cut(s) | 181 |
| Tru1I | TTAA | 1 cut(s) | 14 |
| Tru9I | TTAA | 1 cut(s) | 14 |
| TscAI | CASTG | 4 cut(s) | 115, 128, 137, 225 |
| TseI | GCWGC | 1 cut(s) | 234 |
| TspDTI | ATGAA | 1 cut(s) | 76 |
| TspGWI | ACGGA | 1 cut(s) | 218 |
| TspRI | CASTG | 4 cut(s) | 115, 128, 137, 225 |
| VneI | GTGCAC | 1 cut(s) | 133 |
| VpaK11BI | GGWCC | 1 cut(s) | 196 |
| XapI | RAATTY | 1 cut(s) | 101 |
| XmnI | GAANNNNTTC | 1 cut(s) | 66 |
| Zsp2I | ATGCAT | 1 cut(s) | 59 |