ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 14 - 167 | 1.1e-18 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 480 |
| AciI | CCGC | 1 cut(s) | 152 |
| AcoI | YGGCCR | 1 cut(s) | 193 |
| AcsI | RAATTY | 1 cut(s) | 364 |
| AcuI | CTGAAG | 1 cut(s) | 210 |
| AfaI | GTAC | 1 cut(s) | 437 |
| AgsI | TTSAA | 3 cut(s) | 16, 106, 414 |
| AjnI | CCWGG | 1 cut(s) | 190 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 86, 118 |
| AluBI | AGCT | 2 cut(s) | 403, 516 |
| AluI | AGCT | 2 cut(s) | 403, 516 |
| AoxI | GGCC | 1 cut(s) | 193 |
| ApoI | RAATTY | 1 cut(s) | 364 |
| AseI | ATTAAT | 1 cut(s) | 114 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 163 |
| AsuHPI | GGTGA | 2 cut(s) | 469, 479 |
| BbvCI | CCTCAGC | 1 cut(s) | 501 |
| BccI | CCATC | 1 cut(s) | 13 |
| BceAI | ACGGC | 1 cut(s) | 180 |
| BciT130I | CCWGG | 1 cut(s) | 192 |
| BclI | TGATCA | 1 cut(s) | 49 |
| BfuAI | ACCTGC | 1 cut(s) | 480 |
| BisI | GCNGC | 1 cut(s) | 153 |
| BlpI | GCTNAGC | 1 cut(s) | 399 |
| BlsI | GCNGC | 1 cut(s) | 154 |
| Bme1390I | CCNGG | 1 cut(s) | 192 |
| BmrFI | CCNGG | 1 cut(s) | 192 |
| Bpu10I | CCTNAGC | 1 cut(s) | 501 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 399 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 255, 285 |
| Bse3DI | GCAATG | 1 cut(s) | 147 |
| BseBI | CCWGG | 1 cut(s) | 192 |
| BseMI | GCAATG | 1 cut(s) | 147 |
| BseMII | CTCAG | 1 cut(s) | 492 |
| BseRI | GAGGAG | 1 cut(s) | 518 |
| BshFI | GGCC | 1 cut(s) | 195 |
| BsnI | GGCC | 1 cut(s) | 195 |
| Bsp143I | GATC | 2 cut(s) | 49, 108 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 399 |
| BspACI | CCGC | 1 cut(s) | 152 |
| BspANI | GGCC | 1 cut(s) | 195 |
| BspCNI | CTCAG | 1 cut(s) | 493 |
| BspMI | ACCTGC | 1 cut(s) | 480 |
| BsrDI | GCAATG | 1 cut(s) | 147 |
| BssMI | GATC | 2 cut(s) | 49, 108 |
| Bst2UI | CCWGG | 1 cut(s) | 192 |
| Bst4CI | ACNGT | 1 cut(s) | 72 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 376 |
| BstC8I | GCNNGC | 2 cut(s) | 141, 381 |
| BstDEI | CTNAG | 6 cut(s) | 134, 252, 294, 399, 501, 512 |
| BstEII | GGTNACC | 1 cut(s) | 467 |
| BstKTI | GATC | 2 cut(s) | 52, 111 |
| BstMBI | GATC | 2 cut(s) | 49, 108 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 149, 376 |
| BstNI | CCWGG | 1 cut(s) | 192 |
| BstNSI | RCATGY | 2 cut(s) | 182, 383 |
| BstPI | GGTNACC | 1 cut(s) | 467 |
| BstSCI | CCNGG | 1 cut(s) | 190 |
| BsuRI | GGCC | 1 cut(s) | 195 |
| BtsIMutI | CAGTG | 1 cut(s) | 435 |
| BveI | ACCTGC | 1 cut(s) | 480 |
| Cac8I | GCNNGC | 2 cut(s) | 141, 381 |
| Csp6I | GTAC | 1 cut(s) | 436 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 264, 299 |
| CviAII | CATG | 5 cut(s) | 53, 179, 260, 332, 380 |
| CviJI | RGCY | 8 cut(s) | 131, 139, 155, 195, 299, 403, 500, 516 |
| CviKI_1 | RGCY | 8 cut(s) | 131, 139, 155, 195, 299, 403, 500, 516 |
| CviQI | GTAC | 1 cut(s) | 436 |
| DdeI | CTNAG | 6 cut(s) | 134, 252, 294, 399, 501, 512 |
| DpnI | GATC | 2 cut(s) | 51, 110 |
| DpnII | GATC | 2 cut(s) | 49, 108 |
| EaeI | YGGCCR | 1 cut(s) | 193 |
| Eco57I | CTGAAG | 1 cut(s) | 210 |
| Eco91I | GGTNACC | 1 cut(s) | 467 |
| EcoO65I | GGTNACC | 1 cut(s) | 467 |
| EcoRII | CCWGG | 1 cut(s) | 190 |
| FaeI | CATG | 5 cut(s) | 56, 182, 263, 335, 383 |
| FaiI | YATR | 6 cut(s) | 54, 180, 201, 261, 333, 381 |
| FatI | CATG | 5 cut(s) | 52, 178, 259, 331, 379 |
| FbaI | TGATCA | 1 cut(s) | 49 |
| Fnu4HI | GCNGC | 1 cut(s) | 153 |
| Fsp4HI | GCNGC | 1 cut(s) | 153 |
| GluI | GCNGC | 1 cut(s) | 153 |
| HaeIII | GGCC | 1 cut(s) | 195 |
| Hin1II | CATG | 5 cut(s) | 56, 182, 263, 335, 383 |
| HindIII | AAGCTT | 1 cut(s) | 401 |
| HinfI | GANTC | 4 cut(s) | 37, 59, 124, 248 |
| HphI | GGTGA | 2 cut(s) | 469, 479 |
| Hpy166II | GTNNAC | 1 cut(s) | 286 |
| Hpy188I | TCNGA | 3 cut(s) | 90, 208, 229 |
| Hpy188III | TCNNGA | 1 cut(s) | 106 |
| Hpy8I | GTNNAC | 1 cut(s) | 286 |
| HpyAV | CCTTC | 1 cut(s) | 398 |
| HpyCH4III | ACNGT | 1 cut(s) | 72 |
| HpyCH4V | TGCA | 4 cut(s) | 56, 213, 370, 379 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 149, 376 |
| HpyF3I | CTNAG | 6 cut(s) | 134, 252, 294, 399, 501, 512 |
| Hsp92II | CATG | 5 cut(s) | 56, 182, 263, 335, 383 |
| Ksp22I | TGATCA | 1 cut(s) | 49 |
| Kzo9I | GATC | 2 cut(s) | 49, 108 |
| LpnPI | CCDG | 5 cut(s) | 6, 113, 177, 204, 485 |
| MaeIII | GTNAC | 1 cut(s) | 467 |
| MalI | GATC | 2 cut(s) | 51, 110 |
| MboI | GATC | 2 cut(s) | 49, 108 |
| MboII | GAAGA | 2 cut(s) | 317, 320 |
| MluCI | AATT | 4 cut(s) | 16, 159, 276, 364 |
| MmeI | TCCRAC | 1 cut(s) | 225 |
| MnlI | CCTC | 7 cut(s) | 87, 257, 417, 446, 453, 496, 499 |
| MroXI | GAANNNNTTC | 1 cut(s) | 163 |
| MseI | TTAA | 3 cut(s) | 114, 237, 279 |
| MslI | CAYNNNNRTG | 1 cut(s) | 218 |
| MspR9I | CCNGG | 1 cut(s) | 192 |
| MvaI | CCWGG | 1 cut(s) | 192 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 149, 376 |
| NdeII | GATC | 2 cut(s) | 49, 108 |
| NlaIII | CATG | 5 cut(s) | 56, 182, 263, 335, 383 |
| NmuCI | GTSAC | 1 cut(s) | 467 |
| NspI | RCATGY | 2 cut(s) | 182, 383 |
| PaeI | GCATGC | 1 cut(s) | 383 |
| PdmI | GAANNNNTTC | 1 cut(s) | 163 |
| PfeI | GAWTC | 4 cut(s) | 37, 59, 124, 248 |
| PkrI | GCNGC | 1 cut(s) | 154 |
| PshBI | ATTAAT | 1 cut(s) | 114 |
| Psp6I | CCWGG | 1 cut(s) | 190 |
| PspEI | GGTNACC | 1 cut(s) | 467 |
| PspGI | CCWGG | 1 cut(s) | 190 |
| RsaI | GTAC | 1 cut(s) | 437 |
| RsaNI | GTAC | 1 cut(s) | 436 |
| RseI | CAYNNNNRTG | 1 cut(s) | 218 |
| SaqAI | TTAA | 3 cut(s) | 114, 237, 279 |
| SatI | GCNGC | 1 cut(s) | 153 |
| Sau3AI | GATC | 2 cut(s) | 49, 108 |
| ScrFI | CCNGG | 1 cut(s) | 192 |
| SetI | ASST | 8 cut(s) | 268, 285, 405, 428, 469, 474, 510, 518 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 218 |
| SphI | GCATGC | 1 cut(s) | 383 |
| Sse9I | AATT | 4 cut(s) | 16, 159, 276, 364 |
| SsiI | CCGC | 1 cut(s) | 152 |
| StyD4I | CCNGG | 1 cut(s) | 190 |
| TaaI | ACNGT | 1 cut(s) | 72 |
| TaqI | TCGA | 2 cut(s) | 157, 451 |
| TaqII | GACCGA | 1 cut(s) | 381 |
| TasI | AATT | 4 cut(s) | 16, 159, 276, 364 |
| TauI | GCSGC | 1 cut(s) | 155 |
| TfiI | GAWTC | 4 cut(s) | 37, 59, 124, 248 |
| Tru1I | TTAA | 3 cut(s) | 114, 237, 279 |
| Tru9I | TTAA | 3 cut(s) | 114, 237, 279 |
| TscAI | CASTG | 1 cut(s) | 435 |
| TseFI | GTSAC | 1 cut(s) | 467 |
| Tsp45I | GTSAC | 1 cut(s) | 467 |
| TspDTI | ATGAA | 2 cut(s) | 320, 344 |
| TspRI | CASTG | 1 cut(s) | 435 |
| VspI | ATTAAT | 1 cut(s) | 114 |
| XapI | RAATTY | 1 cut(s) | 364 |
| XceI | RCATGY | 2 cut(s) | 182, 383 |
| XmnI | GAANNNNTTC | 1 cut(s) | 163 |