ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 479, 661 |
| AclWI | GGATC | 2 cut(s) | 22, 419 |
| AcsI | RAATTY | 1 cut(s) | 133 |
| AcuI | CTGAAG | 2 cut(s) | 239, 573 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 354, 697 |
| AflIII | ACRYGT | 1 cut(s) | 439 |
| AgsI | TTSAA | 3 cut(s) | 139, 157, 325 |
| AjnI | CCWGG | 1 cut(s) | 646 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 243, 275 |
| AluBI | AGCT | 1 cut(s) | 401 |
| AluI | AGCT | 1 cut(s) | 401 |
| Alw26I | GTCTC | 1 cut(s) | 186 |
| AlwI | GGATC | 2 cut(s) | 22, 419 |
| AoxI | GGCC | 3 cut(s) | 356, 470, 724 |
| ApoI | RAATTY | 1 cut(s) | 133 |
| AspS9I | GGNCC | 2 cut(s) | 357, 502 |
| AsuC2I | CCSGG | 1 cut(s) | 698 |
| AsuHPI | GGTGA | 1 cut(s) | 649 |
| AvaII | GGWCC | 1 cut(s) | 502 |
| BbsI | GAAGAC | 1 cut(s) | 561 |
| BccI | CCATC | 1 cut(s) | 436 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 223, 257 |
| BciT130I | CCWGG | 1 cut(s) | 648 |
| BcnI | CCSGG | 1 cut(s) | 698 |
| BcoDI | GTCTC | 1 cut(s) | 186 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 732 |
| Bme1390I | CCNGG | 2 cut(s) | 648, 698 |
| Bme18I | GGWCC | 1 cut(s) | 502 |
| BmgT120I | GGNCC | 2 cut(s) | 357, 502 |
| BmiI | GGNNCC | 1 cut(s) | 120 |
| BmrFI | CCNGG | 2 cut(s) | 648, 698 |
| BmsI | GCATC | 2 cut(s) | 37, 451 |
| BpiI | GAAGAC | 1 cut(s) | 561 |
| BpuMI | CCSGG | 1 cut(s) | 698 |
| BsaJI | CCNNGG | 1 cut(s) | 646 |
| BsaWI | WCCGGW | 1 cut(s) | 510 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 354, 697 |
| BseBI | CCWGG | 1 cut(s) | 648 |
| BseDI | CCNNGG | 1 cut(s) | 646 |
| BseGI | GGATG | 2 cut(s) | 52, 427 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 354, 697 |
| BshFI | GGCC | 3 cut(s) | 358, 472, 726 |
| BsiSI | CCGG | 2 cut(s) | 511, 698 |
| BslFI | GGGAC | 1 cut(s) | 278 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 354, 697 |
| BsmAI | GTCTC | 1 cut(s) | 186 |
| BsmFI | GGGAC | 1 cut(s) | 278 |
| BsnI | GGCC | 3 cut(s) | 358, 472, 726 |
| Bsp143I | GATC | 3 cut(s) | 27, 424, 668 |
| BspACI | CCGC | 2 cut(s) | 479, 661 |
| BspANI | GGCC | 3 cut(s) | 358, 472, 726 |
| BspLI | GGNNCC | 1 cut(s) | 120 |
| BspPI | GGATC | 2 cut(s) | 22, 419 |
| BssECI | CCNNGG | 1 cut(s) | 646 |
| BssMI | GATC | 3 cut(s) | 27, 424, 668 |
| Bst2UI | CCWGG | 1 cut(s) | 648 |
| Bst4CI | ACNGT | 1 cut(s) | 259 |
| Bst6I | CTCTTC | 1 cut(s) | 740 |
| BstC8I | GCNNGC | 1 cut(s) | 613 |
| BstDEI | CTNAG | 1 cut(s) | 308 |
| BstEII | GGTNACC | 1 cut(s) | 700 |
| BstF5I | GGATG | 2 cut(s) | 52, 427 |
| BstKTI | GATC | 3 cut(s) | 30, 427, 671 |
| BstMAI | GTCTC | 1 cut(s) | 186 |
| BstMBI | GATC | 3 cut(s) | 27, 424, 668 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 732 |
| BstNI | CCWGG | 1 cut(s) | 648 |
| BstNSI | RCATGY | 2 cut(s) | 238, 443 |
| BstPI | GGTNACC | 1 cut(s) | 700 |
| BstSCI | CCNGG | 2 cut(s) | 646, 696 |
| BstV2I | GAAGAC | 1 cut(s) | 561 |
| BsuRI | GGCC | 3 cut(s) | 358, 472, 726 |
| BtsCI | GGATG | 2 cut(s) | 52, 427 |
| BtsIMutI | CAGTG | 2 cut(s) | 377, 438 |
| Cac8I | GCNNGC | 1 cut(s) | 613 |
| Cfr13I | GGNCC | 2 cut(s) | 357, 502 |
| CseI | GACGC | 1 cut(s) | 460 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 462, 497 |
| CviAII | CATG | 5 cut(s) | 5, 43, 51, 235, 440 |
| CviJI | RGCY | 8 cut(s) | 119, 358, 401, 472, 615, 630, 713, 726 |
| CviKI_1 | RGCY | 8 cut(s) | 119, 358, 401, 472, 615, 630, 713, 726 |
| DdeI | CTNAG | 1 cut(s) | 308 |
| DpnI | GATC | 3 cut(s) | 29, 426, 670 |
| DpnII | GATC | 3 cut(s) | 27, 424, 668 |
| DraI | TTTAAA | 1 cut(s) | 106 |
| Eam1104I | CTCTTC | 1 cut(s) | 740 |
| EarI | CTCTTC | 1 cut(s) | 740 |
| Eco47I | GGWCC | 1 cut(s) | 502 |
| Eco57I | CTGAAG | 2 cut(s) | 239, 573 |
| Eco91I | GGTNACC | 1 cut(s) | 700 |
| EcoO65I | GGTNACC | 1 cut(s) | 700 |
| EcoRII | CCWGG | 1 cut(s) | 646 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 52 |
| FaeI | CATG | 5 cut(s) | 8, 46, 54, 238, 443 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 305, 337 |
| FaqI | GGGAC | 1 cut(s) | 278 |
| FatI | CATG | 5 cut(s) | 4, 42, 50, 234, 439 |
| FauI | CCCGC | 1 cut(s) | 668 |
| FokI | GGATG | 2 cut(s) | 59, 434 |
| HaeIII | GGCC | 3 cut(s) | 358, 472, 726 |
| HapII | CCGG | 2 cut(s) | 511, 698 |
| HgaI | GACGC | 1 cut(s) | 460 |
| Hin1II | CATG | 5 cut(s) | 8, 46, 54, 238, 443 |
| HinfI | GANTC | 5 cut(s) | 14, 142, 367, 524, 651 |
| HpaII | CCGG | 2 cut(s) | 511, 698 |
| HphI | GGTGA | 1 cut(s) | 649 |
| Hpy188I | TCNGA | 4 cut(s) | 69, 151, 219, 668 |
| Hpy188III | TCNNGA | 2 cut(s) | 139, 322 |
| Hpy99I | CGWCG | 2 cut(s) | 357, 454 |
| HpyAV | CCTTC | 3 cut(s) | 286, 462, 689 |
| HpyCH4III | ACNGT | 1 cut(s) | 259 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 50, 200 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 732 |
| HpyF3I | CTNAG | 1 cut(s) | 308 |
| Hsp92II | CATG | 5 cut(s) | 8, 46, 54, 238, 443 |
| Kzo9I | GATC | 3 cut(s) | 27, 424, 668 |
| LmnI | GCTCC | 2 cut(s) | 124, 398 |
| LweI | GCATC | 2 cut(s) | 37, 451 |
| MaeIII | GTNAC | 2 cut(s) | 433, 700 |
| MalI | GATC | 3 cut(s) | 29, 426, 670 |
| MboI | GATC | 3 cut(s) | 27, 424, 668 |
| MboII | GAAGA | 5 cut(s) | 232, 325, 533, 566, 646 |
| MluCI | AATT | 7 cut(s) | 133, 152, 159, 576, 591, 621, 636 |
| MlyI | GAGTC | 2 cut(s) | 23, 136 |
| MmeI | TCCRAC | 3 cut(s) | 235, 279, 622 |
| MnlI | CCTC | 8 cut(s) | 282, 360, 478, 574, 653, 674, 694, 741 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 52 |
| MseI | TTAA | 2 cut(s) | 105, 411 |
| MspI | CCGG | 2 cut(s) | 511, 698 |
| MspR9I | CCNGG | 2 cut(s) | 648, 698 |
| MvaI | CCWGG | 1 cut(s) | 648 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 732 |
| NciI | CCSGG | 1 cut(s) | 698 |
| NdeII | GATC | 3 cut(s) | 27, 424, 668 |
| NlaIII | CATG | 5 cut(s) | 8, 46, 54, 238, 443 |
| NlaIV | GGNNCC | 1 cut(s) | 120 |
| NmuCI | GTSAC | 1 cut(s) | 433 |
| NsiI | ATGCAT | 2 cut(s) | 6, 52 |
| NspI | RCATGY | 2 cut(s) | 238, 443 |
| PciI | ACATGT | 1 cut(s) | 439 |
| PfeI | GAWTC | 3 cut(s) | 367, 524, 651 |
| PleI | GAGTC | 2 cut(s) | 22, 136 |
| PpsI | GAGTC | 2 cut(s) | 22, 136 |
| PscI | ACATGT | 1 cut(s) | 439 |
| Psp6I | CCWGG | 1 cut(s) | 646 |
| PspEI | GGTNACC | 1 cut(s) | 700 |
| PspGI | CCWGG | 1 cut(s) | 646 |
| PspN4I | GGNNCC | 1 cut(s) | 120 |
| PspPI | GGNCC | 2 cut(s) | 357, 502 |
| SaqAI | TTAA | 2 cut(s) | 105, 411 |
| Sau3AI | GATC | 3 cut(s) | 27, 424, 668 |
| Sau96I | GGNCC | 2 cut(s) | 357, 502 |
| SchI | GAGTC | 2 cut(s) | 23, 136 |
| ScrFI | CCNGG | 2 cut(s) | 648, 698 |
| SetI | ASST | 8 cut(s) | 78, 297, 403, 553, 585, 604, 707, 752 |
| SfaNI | GCATC | 2 cut(s) | 37, 451 |
| SinI | GGWCC | 1 cut(s) | 502 |
| Sse9I | AATT | 7 cut(s) | 133, 152, 159, 576, 591, 621, 636 |
| SsiI | CCGC | 2 cut(s) | 479, 661 |
| StyD4I | CCNGG | 2 cut(s) | 646, 696 |
| TaaI | ACNGT | 1 cut(s) | 259 |
| TaqI | TCGA | 3 cut(s) | 130, 243, 276 |
| TasI | AATT | 7 cut(s) | 133, 152, 159, 576, 591, 621, 636 |
| TfiI | GAWTC | 3 cut(s) | 367, 524, 651 |
| Tru1I | TTAA | 2 cut(s) | 105, 411 |
| Tru9I | TTAA | 2 cut(s) | 105, 411 |
| TscAI | CASTG | 2 cut(s) | 377, 438 |
| TseFI | GTSAC | 1 cut(s) | 433 |
| Tsp45I | GTSAC | 1 cut(s) | 433 |
| TspDTI | ATGAA | 1 cut(s) | 264 |
| TspRI | CASTG | 2 cut(s) | 377, 438 |
| VpaK11BI | GGWCC | 1 cut(s) | 502 |
| XapI | RAATTY | 1 cut(s) | 133 |
| XceI | RCATGY | 2 cut(s) | 238, 443 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 52 |