Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 123 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 493 |
| AciI | CCGC | 3 cut(s) | 215, 355, 953 |
| AcsI | RAATTY | 3 cut(s) | 231, 672, 780 |
| AfaI | GTAC | 2 cut(s) | 29, 541 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 493, 952 |
| AgsI | TTSAA | 8 cut(s) | 99, 172, 245, 331, 636, 818, 950, 962 |
| AjnI | CCWGG | 2 cut(s) | 492, 745 |
| AluBI | AGCT | 5 cut(s) | 130, 211, 274, 727, 958 |
| AluI | AGCT | 5 cut(s) | 130, 211, 274, 727, 958 |
| Alw21I | GWGCWC | 3 cut(s) | 383, 434, 745 |
| Alw26I | GTCTC | 1 cut(s) | 985 |
| Ama87I | CYCGRG | 2 cut(s) | 766, 857 |
| ApeKI | GCWGC | 3 cut(s) | 352, 842, 989 |
| ApoI | RAATTY | 3 cut(s) | 231, 672, 780 |
| AspLEI | GCGC | 2 cut(s) | 124, 220 |
| AsuC2I | CCSGG | 2 cut(s) | 858, 859 |
| AsuHPI | GGTGA | 1 cut(s) | 404 |
| AvaI | CYCGRG | 2 cut(s) | 766, 857 |
| BauI | CACGAG | 1 cut(s) | 846 |
| Bbv12I | GWGCWC | 3 cut(s) | 383, 434, 745 |
| BbvI | GCAGC | 3 cut(s) | 364, 829, 1001 |
| BccI | CCATC | 2 cut(s) | 668, 830 |
| BciT130I | CCWGG | 2 cut(s) | 494, 747 |
| BcnI | CCSGG | 2 cut(s) | 858, 859 |
| BcoDI | GTCTC | 1 cut(s) | 985 |
| BfaI | CTAG | 2 cut(s) | 603, 807 |
| BfmI | CTRYAG | 1 cut(s) | 315 |
| BfoI | RGCGCY | 1 cut(s) | 221 |
| BisI | GCNGC | 4 cut(s) | 216, 353, 843, 990 |
| BlpI | GCTNAGC | 1 cut(s) | 207 |
| BlsI | GCNGC | 4 cut(s) | 217, 354, 844, 991 |
| Bme1390I | CCNGG | 4 cut(s) | 494, 747, 858, 859 |
| BmeT110I | CYCGRG | 2 cut(s) | 766, 857 |
| BmiI | GGNNCC | 1 cut(s) | 925 |
| BmrFI | CCNGG | 4 cut(s) | 494, 747, 858, 859 |
| BmsI | GCATC | 4 cut(s) | 133, 380, 404, 589 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 207 |
| BpuMI | CCSGG | 2 cut(s) | 858, 859 |
| BsaJI | CCNNGG | 2 cut(s) | 857, 927 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 493, 952 |
| BseBI | CCWGG | 2 cut(s) | 494, 747 |
| BseDI | CCNNGG | 2 cut(s) | 857, 927 |
| BseGI | GGATG | 1 cut(s) | 604 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 493, 952 |
| BseMII | CTCAG | 1 cut(s) | 198 |
| BseXI | GCAGC | 3 cut(s) | 364, 829, 1001 |
| BsgI | GTGCAG | 1 cut(s) | 371 |
| BsiHKAI | GWGCWC | 3 cut(s) | 383, 434, 745 |
| BsiHKCI | CYCGRG | 2 cut(s) | 766, 857 |
| BsiSI | CCGG | 2 cut(s) | 641, 858 |
| BslFI | GGGAC | 1 cut(s) | 865 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 493, 952 |
| BsmAI | GTCTC | 1 cut(s) | 985 |
| BsmFI | GGGAC | 1 cut(s) | 865 |
| BsoBI | CYCGRG | 2 cut(s) | 766, 857 |
| Bsp1286I | GDGCHC | 3 cut(s) | 383, 434, 745 |
| Bsp1407I | TGTACA | 1 cut(s) | 27 |
| Bsp143I | GATC | 2 cut(s) | 770, 889 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 207 |
| Bsp19I | CCATGG | 1 cut(s) | 927 |
| BspACI | CCGC | 3 cut(s) | 215, 355, 953 |
| BspCNI | CTCAG | 1 cut(s) | 199 |
| BspLI | GGNNCC | 1 cut(s) | 925 |
| BsrGI | TGTACA | 1 cut(s) | 27 |
| BssECI | CCNNGG | 2 cut(s) | 857, 927 |
| BssMI | GATC | 2 cut(s) | 770, 889 |
| BssSI | CACGAG | 1 cut(s) | 846 |
| BssT1I | CCWWGG | 1 cut(s) | 927 |
| Bst2BI | CACGAG | 1 cut(s) | 846 |
| Bst2UI | CCWGG | 2 cut(s) | 494, 747 |
| BstAUI | TGTACA | 1 cut(s) | 27 |
| BstC8I | GCNNGC | 5 cut(s) | 213, 580, 801, 868, 922 |
| BstDEI | CTNAG | 1 cut(s) | 207 |
| BstDSI | CCRYGG | 1 cut(s) | 927 |
| BstF5I | GGATG | 1 cut(s) | 604 |
| BstH2I | RGCGCY | 1 cut(s) | 221 |
| BstHHI | GCGC | 2 cut(s) | 124, 220 |
| BstKTI | GATC | 2 cut(s) | 773, 892 |
| BstMAI | GTCTC | 1 cut(s) | 985 |
| BstMBI | GATC | 2 cut(s) | 770, 889 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 212, 217, 950 |
| BstNI | CCWGG | 2 cut(s) | 494, 747 |
| BstNSI | RCATGY | 2 cut(s) | 506, 803 |
| BstSCI | CCNGG | 4 cut(s) | 492, 745, 856, 857 |
| BstSFI | CTRYAG | 1 cut(s) | 315 |
| BstV1I | GCAGC | 3 cut(s) | 364, 829, 1001 |
| BtgI | CCRYGG | 1 cut(s) | 927 |
| BtsCI | GGATG | 1 cut(s) | 604 |
| BtsI | GCAGTG | 1 cut(s) | 521 |
| BtsIMutI | CAGTG | 2 cut(s) | 521, 745 |
| Cac8I | GCNNGC | 5 cut(s) | 213, 580, 801, 868, 922 |
| CfoI | GCGC | 2 cut(s) | 124, 220 |
| Cfr9I | CCCGGG | 1 cut(s) | 857 |
| CseI | GACGC | 1 cut(s) | 617 |
| Csp6I | GTAC | 2 cut(s) | 28, 540 |
| CviAII | CATG | 8 cut(s) | 77, 180, 392, 503, 530, 800, 928, 974 |
| CviQI | GTAC | 2 cut(s) | 28, 540 |
| DdeI | CTNAG | 1 cut(s) | 207 |
| DpnI | GATC | 2 cut(s) | 772, 891 |
| DpnII | GATC | 2 cut(s) | 770, 889 |
| Eco130I | CCWWGG | 1 cut(s) | 927 |
| Eco88I | CYCGRG | 2 cut(s) | 766, 857 |
| EcoRII | CCWGG | 2 cut(s) | 492, 745 |
| EcoT14I | CCWWGG | 1 cut(s) | 927 |
| EcoT22I | ATGCAT | 2 cut(s) | 397, 711 |
| ErhI | CCWWGG | 1 cut(s) | 927 |
| FaeI | CATG | 8 cut(s) | 80, 183, 395, 506, 533, 803, 931, 977 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 942, 974 |
| FaqI | GGGAC | 1 cut(s) | 865 |
| FatI | CATG | 8 cut(s) | 76, 179, 391, 502, 529, 799, 927, 973 |
| FauI | CCCGC | 1 cut(s) | 348 |
| Fnu4HI | GCNGC | 4 cut(s) | 216, 353, 843, 990 |
| FokI | GGATG | 1 cut(s) | 611 |
| Fsp4HI | GCNGC | 4 cut(s) | 216, 353, 843, 990 |
| FspBI | CTAG | 2 cut(s) | 603, 807 |
| FspI | TGCGCA | 1 cut(s) | 123 |
| GlaI | GCGC | 2 cut(s) | 123, 219 |
| GluI | GCNGC | 4 cut(s) | 216, 353, 843, 990 |
| HaeII | RGCGCY | 1 cut(s) | 221 |
| HapII | CCGG | 2 cut(s) | 641, 858 |
| HgaI | GACGC | 1 cut(s) | 617 |
| HhaI | GCGC | 2 cut(s) | 124, 220 |
| Hin1II | CATG | 8 cut(s) | 80, 183, 395, 506, 533, 803, 931, 977 |
| Hin6I | GCGC | 2 cut(s) | 122, 218 |
| HinP1I | GCGC | 2 cut(s) | 122, 218 |
| HincII | GTYRAC | 1 cut(s) | 481 |
| HindII | GTYRAC | 1 cut(s) | 481 |
| HindIII | AAGCTT | 1 cut(s) | 272 |
| HinfI | GANTC | 4 cut(s) | 287, 652, 686, 750 |
| HpaI | GTTAAC | 1 cut(s) | 481 |
| HpaII | CCGG | 2 cut(s) | 641, 858 |
| HphI | GGTGA | 1 cut(s) | 404 |
| Hpy166II | GTNNAC | 2 cut(s) | 15, 481 |
| Hpy188I | TCNGA | 3 cut(s) | 160, 229, 887 |
| Hpy188III | TCNNGA | 5 cut(s) | 331, 623, 677, 768, 785 |
| Hpy8I | GTNNAC | 2 cut(s) | 15, 481 |
| HpyAV | CCTTC | 2 cut(s) | 261, 991 |
| HpyCH4V | TGCA | 8 cut(s) | 352, 371, 395, 458, 526, 550, 709, 977 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 212, 217, 950 |
| HpyF3I | CTNAG | 1 cut(s) | 207 |
| Hsp92II | CATG | 8 cut(s) | 80, 183, 395, 506, 533, 803, 931, 977 |
| HspAI | GCGC | 2 cut(s) | 122, 218 |
| KspAI | GTTAAC | 1 cut(s) | 481 |
| Kzo9I | GATC | 2 cut(s) | 770, 889 |
| LmnI | GCTCC | 5 cut(s) | 724, 748, 808, 929, 955 |
| LpnPI | CCDG | 9 cut(s) | 479, 506, 564, 654, 732, 759, 852, 871, 906 |
| Lsp1109I | GCAGC | 3 cut(s) | 364, 829, 1001 |
| LweI | GCATC | 4 cut(s) | 133, 380, 404, 589 |
| MaeI | CTAG | 2 cut(s) | 603, 807 |
| MaeIII | GTNAC | 3 cut(s) | 56, 410, 666 |
| MalI | GATC | 2 cut(s) | 772, 891 |
| MboI | GATC | 2 cut(s) | 770, 889 |
| MfeI | CAATTG | 2 cut(s) | 63, 545 |
| MhlI | GDGCHC | 3 cut(s) | 383, 434, 745 |
| MmeI | TCCRAC | 2 cut(s) | 264, 273 |
| MnlI | CCTC | 5 cut(s) | 289, 438, 567, 775, 987 |
| Mph1103I | ATGCAT | 2 cut(s) | 397, 711 |
| MseI | TTAA | 2 cut(s) | 480, 828 |
| MslI | CAYNNNNRTG | 2 cut(s) | 376, 798 |
| MspA1I | CMGCKG | 1 cut(s) | 355 |
| MspI | CCGG | 2 cut(s) | 641, 858 |
| MspR9I | CCNGG | 4 cut(s) | 494, 747, 858, 859 |
| MunI | CAATTG | 2 cut(s) | 63, 545 |
| MvaI | CCWGG | 2 cut(s) | 494, 747 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 212, 217, 950 |
| NciI | CCSGG | 2 cut(s) | 858, 859 |
| NcoI | CCATGG | 1 cut(s) | 927 |
| NdeII | GATC | 2 cut(s) | 770, 889 |
| NlaIII | CATG | 8 cut(s) | 80, 183, 395, 506, 533, 803, 931, 977 |
| NlaIV | GGNNCC | 1 cut(s) | 925 |
| NmuCI | GTSAC | 3 cut(s) | 56, 410, 666 |
| NsbI | TGCGCA | 1 cut(s) | 123 |
| NsiI | ATGCAT | 2 cut(s) | 397, 711 |
| NspI | RCATGY | 2 cut(s) | 506, 803 |
| PaeI | GCATGC | 1 cut(s) | 803 |
| PaeR7I | CTCGAG | 1 cut(s) | 766 |
| PfeI | GAWTC | 4 cut(s) | 287, 652, 686, 750 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 493 |
| PfoI | TCCNGGA | 2 cut(s) | 492, 745 |
| PkrI | GCNGC | 4 cut(s) | 217, 354, 844, 991 |
| Psp6I | CCWGG | 2 cut(s) | 492, 745 |
| PspGI | CCWGG | 2 cut(s) | 492, 745 |
| PspN4I | GGNNCC | 1 cut(s) | 925 |
| RsaI | GTAC | 2 cut(s) | 29, 541 |
| RsaNI | GTAC | 2 cut(s) | 28, 540 |
| RseI | CAYNNNNRTG | 2 cut(s) | 376, 798 |
| SaqAI | TTAA | 2 cut(s) | 480, 828 |
| SatI | GCNGC | 4 cut(s) | 216, 353, 843, 990 |
| Sau3AI | GATC | 2 cut(s) | 770, 889 |
| ScrFI | CCNGG | 4 cut(s) | 494, 747, 858, 859 |
| SduI | GDGCHC | 3 cut(s) | 383, 434, 745 |
| SetI | ASST | 8 cut(s) | 132, 213, 276, 420, 729, 760, 828, 960 |
| SfaNI | GCATC | 4 cut(s) | 133, 380, 404, 589 |
| SfcI | CTRYAG | 1 cut(s) | 315 |
| Sfr274I | CTCGAG | 1 cut(s) | 766 |
| SlaI | CTCGAG | 1 cut(s) | 766 |
| SmaI | CCCGGG | 1 cut(s) | 859 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 376, 798 |
| SmlI | CTYRAG | 1 cut(s) | 766 |
| SmoI | CTYRAG | 1 cut(s) | 766 |
| SphI | GCATGC | 1 cut(s) | 803 |
| SsiI | CCGC | 3 cut(s) | 215, 355, 953 |
| SspMI | CTAG | 2 cut(s) | 603, 807 |
| StyD4I | CCNGG | 4 cut(s) | 492, 745, 856, 857 |
| StyI | CCWWGG | 1 cut(s) | 927 |
| TaqI | TCGA | 2 cut(s) | 676, 767 |
| TatI | WGTACW | 1 cut(s) | 27 |
| TauI | GCSGC | 1 cut(s) | 218 |
| TfiI | GAWTC | 4 cut(s) | 287, 652, 686, 750 |
| Tru1I | TTAA | 2 cut(s) | 480, 828 |
| Tru9I | TTAA | 2 cut(s) | 480, 828 |
| TscAI | CASTG | 2 cut(s) | 528, 745 |
| TseFI | GTSAC | 3 cut(s) | 56, 410, 666 |
| TseI | GCWGC | 3 cut(s) | 352, 842, 989 |
| Tsp45I | GTSAC | 3 cut(s) | 56, 410, 666 |
| TspDTI | ATGAA | 2 cut(s) | 154, 962 |
| TspMI | CCCGGG | 1 cut(s) | 857 |
| TspRI | CASTG | 2 cut(s) | 528, 745 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 493 |
| XapI | RAATTY | 3 cut(s) | 231, 672, 780 |
| XceI | RCATGY | 2 cut(s) | 506, 803 |
| XhoI | CTCGAG | 1 cut(s) | 766 |
| XmaI | CCCGGG | 1 cut(s) | 857 |
| XspI | CTAG | 2 cut(s) | 603, 807 |
| Zsp2I | ATGCAT | 2 cut(s) | 397, 711 |