ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 405 |
| AccB1I | GGYRCC | 1 cut(s) | 270 |
| AcsI | RAATTY | 4 cut(s) | 16, 53, 87, 615 |
| AcyI | GRCGYC | 1 cut(s) | 271 |
| AfaI | GTAC | 2 cut(s) | 7, 352 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 458 |
| AflIII | ACRYGT | 1 cut(s) | 409 |
| AgsI | TTSAA | 4 cut(s) | 95, 113, 147, 311 |
| AhlI | ACTAGT | 1 cut(s) | 455 |
| AluBI | AGCT | 6 cut(s) | 150, 307, 346, 569, 580, 624 |
| AluI | AGCT | 6 cut(s) | 150, 307, 346, 569, 580, 624 |
| Alw26I | GTCTC | 1 cut(s) | 545 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 335 |
| ApeKI | GCWGC | 2 cut(s) | 304, 650 |
| ApoI | RAATTY | 4 cut(s) | 16, 53, 87, 615 |
| AseI | ATTAAT | 1 cut(s) | 131 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 90 |
| AspLEI | GCGC | 3 cut(s) | 273, 406, 600 |
| AspS9I | GGNCC | 1 cut(s) | 39 |
| AsuII | TTCGAA | 1 cut(s) | 674 |
| AsuNHI | GCTAGC | 1 cut(s) | 424 |
| AvaII | GGWCC | 1 cut(s) | 39 |
| BanI | GGYRCC | 1 cut(s) | 270 |
| BbvI | GCAGC | 2 cut(s) | 316, 637 |
| BccI | CCATC | 2 cut(s) | 167, 189 |
| BciVI | GTATCC | 2 cut(s) | 170, 332 |
| BcoDI | GTCTC | 1 cut(s) | 545 |
| BcuI | ACTAGT | 1 cut(s) | 455 |
| BfaI | CTAG | 4 cut(s) | 185, 425, 456, 534 |
| BfoI | RGCGCY | 2 cut(s) | 274, 601 |
| BfuI | GTATCC | 2 cut(s) | 170, 332 |
| BisI | GCNGC | 2 cut(s) | 305, 651 |
| BlsI | GCNGC | 2 cut(s) | 306, 652 |
| Bme18I | GGWCC | 1 cut(s) | 39 |
| BmgT120I | GGNCC | 1 cut(s) | 39 |
| BmiI | GGNNCC | 3 cut(s) | 81, 141, 272 |
| BmtI | GCTAGC | 1 cut(s) | 428 |
| Bpu10I | CCTNAGC | 1 cut(s) | 151 |
| Bpu14I | TTCGAA | 1 cut(s) | 674 |
| BpuEI | CTTGAG | 1 cut(s) | 614 |
| BsaHI | GRCGYC | 1 cut(s) | 271 |
| BsaJI | CCNNGG | 1 cut(s) | 248 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 458 |
| Bse1I | ACTGG | 1 cut(s) | 71 |
| Bse3DI | GCAATG | 2 cut(s) | 41, 425 |
| BseDI | CCNNGG | 1 cut(s) | 248 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 458 |
| BseMI | GCAATG | 2 cut(s) | 41, 425 |
| BseMII | CTCAG | 1 cut(s) | 165 |
| BseNI | ACTGG | 1 cut(s) | 71 |
| BseXI | GCAGC | 2 cut(s) | 316, 637 |
| BsgI | GTGCAG | 1 cut(s) | 323 |
| BshNI | GGYRCC | 1 cut(s) | 270 |
| BslFI | GGGAC | 1 cut(s) | 454 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 458 |
| BsmAI | GTCTC | 1 cut(s) | 545 |
| BsmFI | GGGAC | 1 cut(s) | 454 |
| BsmI | GAATGC | 1 cut(s) | 232 |
| Bsp119I | TTCGAA | 1 cut(s) | 674 |
| BspCNI | CTCAG | 1 cut(s) | 164 |
| BspLI | GGNNCC | 3 cut(s) | 81, 141, 272 |
| BspOI | GCTAGC | 1 cut(s) | 428 |
| BspT104I | TTCGAA | 1 cut(s) | 674 |
| BspT107I | GGYRCC | 1 cut(s) | 270 |
| BsrDI | GCAATG | 2 cut(s) | 41, 425 |
| BsrI | ACTGG | 1 cut(s) | 71 |
| BssECI | CCNNGG | 1 cut(s) | 248 |
| BssNI | GRCGYC | 1 cut(s) | 271 |
| Bst4CI | ACNGT | 3 cut(s) | 10, 252, 331 |
| BstACI | GRCGYC | 1 cut(s) | 271 |
| BstBI | TTCGAA | 1 cut(s) | 674 |
| BstC8I | GCNNGC | 6 cut(s) | 344, 426, 430, 531, 571, 626 |
| BstDEI | CTNAG | 4 cut(s) | 151, 222, 581, 693 |
| BstDSI | CCRYGG | 1 cut(s) | 248 |
| BstH2I | RGCGCY | 2 cut(s) | 274, 601 |
| BstHHI | GCGC | 3 cut(s) | 273, 406, 600 |
| BstMAI | GTCTC | 1 cut(s) | 545 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 554 |
| BstNSI | RCATGY | 3 cut(s) | 413, 432, 664 |
| BstV1I | GCAGC | 2 cut(s) | 316, 637 |
| BsuI | GTATCC | 2 cut(s) | 170, 332 |
| BtgI | CCRYGG | 1 cut(s) | 248 |
| BtsIMutI | CAGTG | 1 cut(s) | 336 |
| Cac8I | GCNNGC | 6 cut(s) | 344, 426, 430, 531, 571, 626 |
| CaiI | CAGNNNCTG | 1 cut(s) | 335 |
| CfoI | GCGC | 3 cut(s) | 273, 406, 600 |
| Cfr13I | GGNCC | 1 cut(s) | 39 |
| Csp6I | GTAC | 2 cut(s) | 6, 351 |
| CviAII | CATG | 5 cut(s) | 267, 410, 429, 610, 661 |
| CviQI | GTAC | 2 cut(s) | 6, 351 |
| DdeI | CTNAG | 4 cut(s) | 151, 222, 581, 693 |
| DinI | GGCGCC | 1 cut(s) | 272 |
| Eco47I | GGWCC | 1 cut(s) | 39 |
| EgeI | GGCGCC | 1 cut(s) | 272 |
| EheI | GGCGCC | 1 cut(s) | 272 |
| FaeI | CATG | 5 cut(s) | 270, 413, 432, 613, 664 |
| FaqI | GGGAC | 1 cut(s) | 454 |
| FatI | CATG | 5 cut(s) | 266, 409, 428, 609, 660 |
| Fnu4HI | GCNGC | 2 cut(s) | 305, 651 |
| Fsp4HI | GCNGC | 2 cut(s) | 305, 651 |
| FspBI | CTAG | 4 cut(s) | 185, 425, 456, 534 |
| FspI | TGCGCA | 1 cut(s) | 405 |
| GlaI | GCGC | 3 cut(s) | 272, 405, 599 |
| GluI | GCNGC | 2 cut(s) | 305, 651 |
| HaeII | RGCGCY | 2 cut(s) | 274, 601 |
| HhaI | GCGC | 3 cut(s) | 273, 406, 600 |
| Hin1I | GRCGYC | 1 cut(s) | 271 |
| Hin1II | CATG | 5 cut(s) | 270, 413, 432, 613, 664 |
| Hin6I | GCGC | 3 cut(s) | 271, 404, 598 |
| HinP1I | GCGC | 3 cut(s) | 271, 404, 598 |
| HincII | GTYRAC | 1 cut(s) | 688 |
| HindII | GTYRAC | 1 cut(s) | 688 |
| HindIII | AAGCTT | 1 cut(s) | 578 |
| HinfI | GANTC | 1 cut(s) | 371 |
| Hpy166II | GTNNAC | 1 cut(s) | 688 |
| Hpy188I | TCNGA | 2 cut(s) | 172, 205 |
| Hpy188III | TCNNGA | 1 cut(s) | 83 |
| Hpy8I | GTNNAC | 1 cut(s) | 688 |
| HpyAV | CCTTC | 2 cut(s) | 153, 612 |
| HpyCH4III | ACNGT | 3 cut(s) | 10, 252, 331 |
| HpyCH4V | TGCA | 2 cut(s) | 59, 304 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 554 |
| HpyF3I | CTNAG | 4 cut(s) | 151, 222, 581, 693 |
| Hsp92I | GRCGYC | 1 cut(s) | 271 |
| Hsp92II | CATG | 5 cut(s) | 270, 413, 432, 613, 664 |
| HspAI | GCGC | 3 cut(s) | 271, 404, 598 |
| KasI | GGCGCC | 1 cut(s) | 270 |
| LmnI | GCTCC | 3 cut(s) | 85, 139, 658 |
| LpnPI | CCDG | 5 cut(s) | 84, 96, 129, 138, 356 |
| Lsp1109I | GCAGC | 2 cut(s) | 316, 637 |
| MaeI | CTAG | 4 cut(s) | 185, 425, 456, 534 |
| MaeIII | GTNAC | 1 cut(s) | 388 |
| MboII | GAAGA | 2 cut(s) | 83, 218 |
| MfeI | CAATTG | 1 cut(s) | 108 |
| MluCI | AATT | 7 cut(s) | 16, 53, 60, 87, 108, 132, 615 |
| Mly113I | GGCGCC | 1 cut(s) | 271 |
| MnlI | CCTC | 5 cut(s) | 311, 361, 493, 583, 617 |
| MroXI | GAANNNNTTC | 1 cut(s) | 90 |
| MseI | TTAA | 1 cut(s) | 131 |
| MunI | CAATTG | 1 cut(s) | 108 |
| Mva1269I | GAATGC | 1 cut(s) | 232 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 554 |
| NarI | GGCGCC | 1 cut(s) | 271 |
| NheI | GCTAGC | 1 cut(s) | 424 |
| NlaIII | CATG | 5 cut(s) | 270, 413, 432, 613, 664 |
| NlaIV | GGNNCC | 3 cut(s) | 81, 141, 272 |
| NmuCI | GTSAC | 1 cut(s) | 388 |
| NsbI | TGCGCA | 1 cut(s) | 405 |
| NspI | RCATGY | 3 cut(s) | 413, 432, 664 |
| NspV | TTCGAA | 1 cut(s) | 674 |
| PaeI | GCATGC | 1 cut(s) | 432 |
| PciI | ACATGT | 1 cut(s) | 409 |
| PctI | GAATGC | 1 cut(s) | 232 |
| PdmI | GAANNNNTTC | 1 cut(s) | 90 |
| PfeI | GAWTC | 1 cut(s) | 371 |
| PkrI | GCNGC | 2 cut(s) | 306, 652 |
| PluTI | GGCGCC | 1 cut(s) | 274 |
| PscI | ACATGT | 1 cut(s) | 409 |
| PshBI | ATTAAT | 1 cut(s) | 131 |
| PspN4I | GGNNCC | 3 cut(s) | 81, 141, 272 |
| PspPI | GGNCC | 1 cut(s) | 39 |
| PstNI | CAGNNNCTG | 1 cut(s) | 335 |
| RsaI | GTAC | 2 cut(s) | 7, 352 |
| RsaNI | GTAC | 2 cut(s) | 6, 351 |
| SaqAI | TTAA | 1 cut(s) | 131 |
| SatI | GCNGC | 2 cut(s) | 305, 651 |
| Sau96I | GGNCC | 1 cut(s) | 39 |
| SfoI | GGCGCC | 1 cut(s) | 272 |
| SfuI | TTCGAA | 1 cut(s) | 674 |
| SinI | GGWCC | 1 cut(s) | 39 |
| SmlI | CTYRAG | 1 cut(s) | 629 |
| SmoI | CTYRAG | 1 cut(s) | 629 |
| SpeI | ACTAGT | 1 cut(s) | 455 |
| SphI | GCATGC | 1 cut(s) | 432 |
| Sse9I | AATT | 7 cut(s) | 16, 53, 60, 87, 108, 132, 615 |
| SspDI | GGCGCC | 1 cut(s) | 270 |
| SspI | AATATT | 1 cut(s) | 523 |
| SspMI | CTAG | 4 cut(s) | 185, 425, 456, 534 |
| TaaI | ACNGT | 3 cut(s) | 10, 252, 331 |
| TaqI | TCGA | 2 cut(s) | 190, 674 |
| TasI | AATT | 7 cut(s) | 16, 53, 60, 87, 108, 132, 615 |
| TatI | WGTACW | 1 cut(s) | 350 |
| TfiI | GAWTC | 1 cut(s) | 371 |
| Tru1I | TTAA | 1 cut(s) | 131 |
| Tru9I | TTAA | 1 cut(s) | 131 |
| TscAI | CASTG | 1 cut(s) | 336 |
| TseFI | GTSAC | 1 cut(s) | 388 |
| TseI | GCWGC | 2 cut(s) | 304, 650 |
| Tsp45I | GTSAC | 1 cut(s) | 388 |
| TspDTI | ATGAA | 2 cut(s) | 66, 229 |
| TspRI | CASTG | 1 cut(s) | 336 |
| VpaK11BI | GGWCC | 1 cut(s) | 39 |
| VspI | ATTAAT | 1 cut(s) | 131 |
| XapI | RAATTY | 4 cut(s) | 16, 53, 87, 615 |
| XceI | RCATGY | 3 cut(s) | 413, 432, 664 |
| XmnI | GAANNNNTTC | 1 cut(s) | 90 |
| XspI | CTAG | 4 cut(s) | 185, 425, 456, 534 |