Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 83 - 203 | 2.7e-17 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 194 |
| AccB1I | GGYRCC | 1 cut(s) | 106 |
| AciI | CCGC | 4 cut(s) | 25, 104, 281, 284 |
| AcsI | RAATTY | 3 cut(s) | 161, 306, 604 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 63, 205 |
| AflII | CTTAAG | 1 cut(s) | 155 |
| AgsI | TTSAA | 4 cut(s) | 81, 185, 464, 487 |
| AjnI | CCWGG | 3 cut(s) | 118, 233, 274 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 596, 628 |
| AluBI | AGCT | 3 cut(s) | 34, 244, 670 |
| AluI | AGCT | 3 cut(s) | 34, 244, 670 |
| AoxI | GGCC | 3 cut(s) | 256, 497, 615 |
| ApeKI | GCWGC | 1 cut(s) | 52 |
| ApoI | RAATTY | 3 cut(s) | 161, 306, 604 |
| AspLEI | GCGC | 1 cut(s) | 195 |
| AsuII | TTCGAA | 1 cut(s) | 128 |
| AxyI | CCTNAGG | 1 cut(s) | 685 |
| BanI | GGYRCC | 1 cut(s) | 106 |
| BbsI | GAAGAC | 1 cut(s) | 468 |
| BbvI | GCAGC | 1 cut(s) | 64 |
| BciT130I | CCWGG | 3 cut(s) | 120, 235, 276 |
| BfrI | CTTAAG | 1 cut(s) | 155 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 496 |
| BisI | GCNGC | 4 cut(s) | 53, 105, 282, 285 |
| BlsI | GCNGC | 4 cut(s) | 54, 106, 283, 286 |
| Bme1390I | CCNGG | 3 cut(s) | 120, 235, 276 |
| BmiI | GGNNCC | 2 cut(s) | 108, 638 |
| BmrFI | CCNGG | 3 cut(s) | 120, 235, 276 |
| BmsI | GCATC | 3 cut(s) | 204, 534, 670 |
| BpiI | GAAGAC | 1 cut(s) | 468 |
| Bpu14I | TTCGAA | 1 cut(s) | 128 |
| BsaJI | CCNNGG | 2 cut(s) | 275, 494 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 63, 205 |
| Bse1I | ACTGG | 1 cut(s) | 144 |
| Bse21I | CCTNAGG | 1 cut(s) | 685 |
| BseBI | CCWGG | 3 cut(s) | 120, 235, 276 |
| BseDI | CCNNGG | 2 cut(s) | 275, 494 |
| BseGI | GGATG | 2 cut(s) | 148, 195 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 63, 205 |
| BseNI | ACTGG | 1 cut(s) | 144 |
| BseXI | GCAGC | 1 cut(s) | 64 |
| BshFI | GGCC | 3 cut(s) | 258, 499, 617 |
| BshNI | GGYRCC | 1 cut(s) | 106 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 63, 205 |
| BsmI | GAATGC | 1 cut(s) | 364 |
| BsnI | GGCC | 3 cut(s) | 258, 499, 617 |
| Bsp119I | TTCGAA | 1 cut(s) | 128 |
| BspACI | CCGC | 4 cut(s) | 25, 104, 281, 284 |
| BspANI | GGCC | 3 cut(s) | 258, 499, 617 |
| BspLI | GGNNCC | 2 cut(s) | 108, 638 |
| BspT104I | TTCGAA | 1 cut(s) | 128 |
| BspT107I | GGYRCC | 1 cut(s) | 106 |
| BspTI | CTTAAG | 1 cut(s) | 155 |
| BsrI | ACTGG | 1 cut(s) | 144 |
| BssECI | CCNNGG | 2 cut(s) | 275, 494 |
| BssT1I | CCWWGG | 1 cut(s) | 494 |
| Bst2UI | CCWGG | 3 cut(s) | 120, 235, 276 |
| Bst4CI | ACNGT | 1 cut(s) | 338 |
| BstAFI | CTTAAG | 1 cut(s) | 155 |
| BstBI | TTCGAA | 1 cut(s) | 128 |
| BstC8I | GCNNGC | 1 cut(s) | 635 |
| BstDEI | CTNAG | 2 cut(s) | 666, 685 |
| BstF5I | GGATG | 2 cut(s) | 148, 195 |
| BstHHI | GCGC | 1 cut(s) | 195 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 31, 496, 643 |
| BstNI | CCWGG | 3 cut(s) | 120, 235, 276 |
| BstNSI | RCATGY | 1 cut(s) | 291 |
| BstSCI | CCNGG | 3 cut(s) | 118, 233, 274 |
| BstV1I | GCAGC | 1 cut(s) | 64 |
| BstV2I | GAAGAC | 1 cut(s) | 468 |
| Bsu36I | CCTNAGG | 1 cut(s) | 685 |
| BsuRI | GGCC | 3 cut(s) | 258, 499, 617 |
| BtsCI | GGATG | 2 cut(s) | 148, 195 |
| BtsI | GCAGTG | 1 cut(s) | 390 |
| BtsIMutI | CAGTG | 2 cut(s) | 390, 591 |
| Cac8I | GCNNGC | 1 cut(s) | 635 |
| CfoI | GCGC | 1 cut(s) | 195 |
| CviAII | CATG | 1 cut(s) | 288 |
| DdeI | CTNAG | 2 cut(s) | 666, 685 |
| Eco130I | CCWWGG | 1 cut(s) | 494 |
| Eco81I | CCTNAGG | 1 cut(s) | 685 |
| EcoRII | CCWGG | 3 cut(s) | 118, 233, 274 |
| EcoT14I | CCWWGG | 1 cut(s) | 494 |
| ErhI | CCWWGG | 1 cut(s) | 494 |
| FaeI | CATG | 1 cut(s) | 291 |
| FaiI | YATR | 8 cut(s) | 206, 289, 299, 324, 426, 452, 564, 570 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 23, 55 |
| FatI | CATG | 1 cut(s) | 287 |
| Fnu4HI | GCNGC | 4 cut(s) | 53, 105, 282, 285 |
| FokI | GGATG | 2 cut(s) | 155, 182 |
| Fsp4HI | GCNGC | 4 cut(s) | 53, 105, 282, 285 |
| FspAI | RTGCGCAY | 1 cut(s) | 194 |
| FspI | TGCGCA | 1 cut(s) | 194 |
| GlaI | GCGC | 1 cut(s) | 194 |
| GluI | GCNGC | 4 cut(s) | 53, 105, 282, 285 |
| HaeIII | GGCC | 3 cut(s) | 258, 499, 617 |
| HhaI | GCGC | 1 cut(s) | 195 |
| Hin1II | CATG | 1 cut(s) | 291 |
| Hin6I | GCGC | 1 cut(s) | 193 |
| HinP1I | GCGC | 1 cut(s) | 193 |
| HindIII | AAGCTT | 1 cut(s) | 668 |
| HinfI | GANTC | 4 cut(s) | 226, 271, 446, 690 |
| Hpy188I | TCNGA | 3 cut(s) | 225, 342, 373 |
| Hpy188III | TCNNGA | 1 cut(s) | 355 |
| HpyAV | CCTTC | 4 cut(s) | 13, 458, 493, 569 |
| HpyCH4III | ACNGT | 1 cut(s) | 338 |
| HpyCH4V | TGCA | 2 cut(s) | 547, 558 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 31, 496, 643 |
| HpyF3I | CTNAG | 2 cut(s) | 666, 685 |
| Hsp92II | CATG | 1 cut(s) | 291 |
| HspAI | GCGC | 1 cut(s) | 193 |
| LmnI | GCTCC | 1 cut(s) | 642 |
| Lsp1109I | GCAGC | 1 cut(s) | 64 |
| LweI | GCATC | 3 cut(s) | 204, 534, 670 |
| MboII | GAAGA | 1 cut(s) | 468 |
| MfeI | CAATTG | 1 cut(s) | 520 |
| MluCI | AATT | 8 cut(s) | 81, 161, 306, 520, 538, 548, 580, 604 |
| MlyI | GAGTC | 2 cut(s) | 220, 699 |
| MmeI | TCCRAC | 1 cut(s) | 248 |
| MnlI | CCTC | 7 cut(s) | 67, 210, 323, 465, 510, 657, 704 |
| MseI | TTAA | 6 cut(s) | 84, 147, 156, 240, 377, 537 |
| MspCI | CTTAAG | 1 cut(s) | 155 |
| MspR9I | CCNGG | 3 cut(s) | 120, 235, 276 |
| MunI | CAATTG | 1 cut(s) | 520 |
| Mva1269I | GAATGC | 1 cut(s) | 364 |
| MvaI | CCWGG | 3 cut(s) | 120, 235, 276 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 31, 496, 643 |
| NlaIII | CATG | 1 cut(s) | 291 |
| NlaIV | GGNNCC | 2 cut(s) | 108, 638 |
| NsbI | TGCGCA | 1 cut(s) | 194 |
| NspI | RCATGY | 1 cut(s) | 291 |
| NspV | TTCGAA | 1 cut(s) | 128 |
| PctI | GAATGC | 1 cut(s) | 364 |
| PfeI | GAWTC | 2 cut(s) | 271, 446 |
| PfoI | TCCNGGA | 1 cut(s) | 233 |
| PkrI | GCNGC | 4 cut(s) | 54, 106, 283, 286 |
| PleI | GAGTC | 2 cut(s) | 220, 698 |
| PpsI | GAGTC | 2 cut(s) | 220, 698 |
| Psp6I | CCWGG | 3 cut(s) | 118, 233, 274 |
| PspGI | CCWGG | 3 cut(s) | 118, 233, 274 |
| PspN4I | GGNNCC | 2 cut(s) | 108, 638 |
| SaqAI | TTAA | 6 cut(s) | 84, 147, 156, 240, 377, 537 |
| SatI | GCNGC | 4 cut(s) | 53, 105, 282, 285 |
| SchI | GAGTC | 2 cut(s) | 220, 699 |
| ScrFI | CCNGG | 3 cut(s) | 120, 235, 276 |
| SetI | ASST | 9 cut(s) | 24, 36, 124, 192, 215, 246, 476, 485, 672 |
| SfaNI | GCATC | 3 cut(s) | 204, 534, 670 |
| SfuI | TTCGAA | 1 cut(s) | 128 |
| SmlI | CTYRAG | 1 cut(s) | 155 |
| SmoI | CTYRAG | 1 cut(s) | 155 |
| Sse9I | AATT | 8 cut(s) | 81, 161, 306, 520, 538, 548, 580, 604 |
| SsiI | CCGC | 4 cut(s) | 25, 104, 281, 284 |
| SspI | AATATT | 1 cut(s) | 151 |
| StyD4I | CCNGG | 3 cut(s) | 118, 233, 274 |
| StyI | CCWWGG | 1 cut(s) | 494 |
| TaaI | ACNGT | 1 cut(s) | 338 |
| TaqI | TCGA | 2 cut(s) | 128, 542 |
| TasI | AATT | 8 cut(s) | 81, 161, 306, 520, 538, 548, 580, 604 |
| TauI | GCSGC | 3 cut(s) | 107, 284, 287 |
| TfiI | GAWTC | 2 cut(s) | 271, 446 |
| Tru1I | TTAA | 6 cut(s) | 84, 147, 156, 240, 377, 537 |
| Tru9I | TTAA | 6 cut(s) | 84, 147, 156, 240, 377, 537 |
| TscAI | CASTG | 2 cut(s) | 390, 591 |
| TseI | GCWGC | 1 cut(s) | 52 |
| TspDTI | ATGAA | 3 cut(s) | 86, 500, 557 |
| TspRI | CASTG | 2 cut(s) | 390, 591 |
| Vha464I | CTTAAG | 1 cut(s) | 155 |
| XapI | RAATTY | 3 cut(s) | 161, 306, 604 |
| XceI | RCATGY | 1 cut(s) | 291 |