ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 15 |
| AccI | GTMKAC | 1 cut(s) | 72 |
| AccII | CGCG | 1 cut(s) | 340 |
| AcsI | RAATTY | 3 cut(s) | 25, 46, 408 |
| AfaI | GTAC | 1 cut(s) | 15 |
| AflIII | ACRYGT | 2 cut(s) | 134, 338 |
| AgsI | TTSAA | 1 cut(s) | 192 |
| AjnI | CCWGG | 1 cut(s) | 229 |
| AluBI | AGCT | 3 cut(s) | 274, 286, 395 |
| AluI | AGCT | 3 cut(s) | 274, 286, 395 |
| Alw26I | GTCTC | 1 cut(s) | 312 |
| ApeKI | GCWGC | 2 cut(s) | 283, 395 |
| ApoI | RAATTY | 3 cut(s) | 25, 46, 408 |
| AspS9I | GGNCC | 2 cut(s) | 4, 389 |
| AsuC2I | CCSGG | 1 cut(s) | 387 |
| AvaII | GGWCC | 2 cut(s) | 4, 389 |
| BbsI | GAAGAC | 1 cut(s) | 137 |
| BbvI | GCAGC | 2 cut(s) | 295, 382 |
| BccI | CCATC | 2 cut(s) | 283, 359 |
| BciT130I | CCWGG | 1 cut(s) | 231 |
| BcnI | CCSGG | 1 cut(s) | 387 |
| BcoDI | GTCTC | 1 cut(s) | 312 |
| BfaI | CTAG | 1 cut(s) | 84 |
| BfmI | CTRYAG | 1 cut(s) | 60 |
| BfuAI | ACCTGC | 1 cut(s) | 15 |
| BisI | GCNGC | 2 cut(s) | 284, 396 |
| BlsI | GCNGC | 2 cut(s) | 285, 397 |
| Bme1390I | CCNGG | 2 cut(s) | 231, 387 |
| Bme18I | GGWCC | 2 cut(s) | 4, 389 |
| BmgT120I | GGNCC | 2 cut(s) | 4, 389 |
| BmiI | GGNNCC | 2 cut(s) | 330, 390 |
| BmrFI | CCNGG | 2 cut(s) | 231, 387 |
| BmsI | GCATC | 1 cut(s) | 224 |
| BpiI | GAAGAC | 1 cut(s) | 137 |
| BpuMI | CCSGG | 1 cut(s) | 387 |
| BsaAI | YACGTR | 1 cut(s) | 137 |
| BsaJI | CCNNGG | 1 cut(s) | 344 |
| Bse3DI | GCAATG | 1 cut(s) | 475 |
| BseBI | CCWGG | 1 cut(s) | 231 |
| BseDI | CCNNGG | 1 cut(s) | 344 |
| BseGI | GGATG | 1 cut(s) | 215 |
| BseMI | GCAATG | 1 cut(s) | 475 |
| BseRI | GAGGAG | 1 cut(s) | 128 |
| BseXI | GCAGC | 2 cut(s) | 295, 382 |
| BsgI | GTGCAG | 2 cut(s) | 302, 323 |
| Bsh1236I | CGCG | 1 cut(s) | 340 |
| BsiSI | CCGG | 1 cut(s) | 386 |
| BsmAI | GTCTC | 1 cut(s) | 312 |
| Bsp143I | GATC | 1 cut(s) | 78 |
| Bsp19I | CCATGG | 1 cut(s) | 344 |
| BspFNI | CGCG | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 330, 390 |
| BspMI | ACCTGC | 1 cut(s) | 15 |
| BsrDI | GCAATG | 1 cut(s) | 475 |
| BssECI | CCNNGG | 1 cut(s) | 344 |
| BssMI | GATC | 1 cut(s) | 78 |
| BssT1I | CCWWGG | 1 cut(s) | 344 |
| Bst2UI | CCWGG | 1 cut(s) | 231 |
| BstBAI | YACGTR | 1 cut(s) | 137 |
| BstDEI | CTNAG | 1 cut(s) | 173 |
| BstDSI | CCRYGG | 1 cut(s) | 344 |
| BstF5I | GGATG | 1 cut(s) | 215 |
| BstFNI | CGCG | 1 cut(s) | 340 |
| BstKTI | GATC | 1 cut(s) | 81 |
| BstMAI | GTCTC | 1 cut(s) | 312 |
| BstMBI | GATC | 1 cut(s) | 78 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 271, 280 |
| BstNI | CCWGG | 1 cut(s) | 231 |
| BstSCI | CCNGG | 2 cut(s) | 229, 385 |
| BstSFI | CTRYAG | 1 cut(s) | 60 |
| BstUI | CGCG | 1 cut(s) | 340 |
| BstV1I | GCAGC | 2 cut(s) | 295, 382 |
| BstV2I | GAAGAC | 1 cut(s) | 137 |
| BtgI | CCRYGG | 1 cut(s) | 344 |
| BtsCI | GGATG | 1 cut(s) | 215 |
| BveI | ACCTGC | 1 cut(s) | 15 |
| Cfr13I | GGNCC | 2 cut(s) | 4, 389 |
| CseI | GACGC | 1 cut(s) | 329 |
| Csp6I | GTAC | 1 cut(s) | 14 |
| CviAII | CATG | 2 cut(s) | 92, 345 |
| CviJI | RGCY | 5 cut(s) | 200, 274, 286, 293, 395 |
| CviKI_1 | RGCY | 5 cut(s) | 200, 274, 286, 293, 395 |
| CviQI | GTAC | 1 cut(s) | 14 |
| DdeI | CTNAG | 1 cut(s) | 173 |
| DpnI | GATC | 1 cut(s) | 80 |
| DpnII | GATC | 1 cut(s) | 78 |
| Eco130I | CCWWGG | 1 cut(s) | 344 |
| Eco47I | GGWCC | 2 cut(s) | 4, 389 |
| EcoRII | CCWGG | 1 cut(s) | 229 |
| EcoT14I | CCWWGG | 1 cut(s) | 344 |
| ErhI | CCWWGG | 1 cut(s) | 344 |
| FaeI | CATG | 2 cut(s) | 95, 348 |
| FaiI | YATR | 5 cut(s) | 93, 127, 325, 346, 435 |
| FatI | CATG | 2 cut(s) | 91, 344 |
| FblI | GTMKAC | 1 cut(s) | 72 |
| Fnu4HI | GCNGC | 2 cut(s) | 284, 396 |
| FokI | GGATG | 1 cut(s) | 202 |
| Fsp4HI | GCNGC | 2 cut(s) | 284, 396 |
| FspBI | CTAG | 1 cut(s) | 84 |
| GluI | GCNGC | 2 cut(s) | 284, 396 |
| HapII | CCGG | 1 cut(s) | 386 |
| HgaI | GACGC | 1 cut(s) | 329 |
| Hin1II | CATG | 2 cut(s) | 95, 348 |
| HincII | GTYRAC | 1 cut(s) | 73 |
| HindII | GTYRAC | 1 cut(s) | 73 |
| HinfI | GANTC | 1 cut(s) | 254 |
| HpaII | CCGG | 1 cut(s) | 386 |
| Hpy166II | GTNNAC | 1 cut(s) | 73 |
| Hpy188III | TCNNGA | 1 cut(s) | 22 |
| Hpy8I | GTNNAC | 1 cut(s) | 73 |
| Hpy99I | CGWCG | 1 cut(s) | 77 |
| HpyAV | CCTTC | 1 cut(s) | 177 |
| HpyCH4IV | ACGT | 2 cut(s) | 136, 209 |
| HpyCH4V | TGCA | 3 cut(s) | 215, 283, 304 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 271, 280 |
| HpyF3I | CTNAG | 1 cut(s) | 173 |
| HpySE526I | ACGT | 2 cut(s) | 136, 209 |
| Hsp92II | CATG | 2 cut(s) | 95, 348 |
| Kzo9I | GATC | 1 cut(s) | 78 |
| LmnI | GCTCC | 1 cut(s) | 271 |
| LpnPI | CCDG | 7 cut(s) | 20, 216, 243, 325, 399, 400, 405 |
| Lsp1109I | GCAGC | 2 cut(s) | 295, 382 |
| LweI | GCATC | 1 cut(s) | 224 |
| MaeI | CTAG | 1 cut(s) | 84 |
| MaeII | ACGT | 2 cut(s) | 136, 209 |
| MalI | GATC | 1 cut(s) | 80 |
| MboI | GATC | 1 cut(s) | 78 |
| MboII | GAAGA | 1 cut(s) | 142 |
| MluCI | AATT | 5 cut(s) | 25, 46, 161, 259, 408 |
| MluI | ACGCGT | 1 cut(s) | 338 |
| MmeI | TCCRAC | 2 cut(s) | 231, 359 |
| MnlI | CCTC | 5 cut(s) | 61, 106, 109, 231, 342 |
| MseI | TTAA | 1 cut(s) | 481 |
| MspA1I | CMGCKG | 2 cut(s) | 286, 395 |
| MspI | CCGG | 1 cut(s) | 386 |
| MspR9I | CCNGG | 2 cut(s) | 231, 387 |
| MvaI | CCWGG | 1 cut(s) | 231 |
| MvnI | CGCG | 1 cut(s) | 340 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 271, 280 |
| NciI | CCSGG | 1 cut(s) | 387 |
| NcoI | CCATGG | 1 cut(s) | 344 |
| NdeII | GATC | 1 cut(s) | 78 |
| NlaIII | CATG | 2 cut(s) | 95, 348 |
| NlaIV | GGNNCC | 2 cut(s) | 330, 390 |
| PfeI | GAWTC | 1 cut(s) | 254 |
| PkrI | GCNGC | 2 cut(s) | 285, 397 |
| Ppu21I | YACGTR | 1 cut(s) | 137 |
| Psp6I | CCWGG | 1 cut(s) | 229 |
| PspGI | CCWGG | 1 cut(s) | 229 |
| PspN4I | GGNNCC | 2 cut(s) | 330, 390 |
| PspPI | GGNCC | 2 cut(s) | 4, 389 |
| PvuII | CAGCTG | 2 cut(s) | 286, 395 |
| RsaI | GTAC | 1 cut(s) | 15 |
| RsaNI | GTAC | 1 cut(s) | 14 |
| SalI | GTCGAC | 1 cut(s) | 71 |
| SaqAI | TTAA | 1 cut(s) | 481 |
| SatI | GCNGC | 2 cut(s) | 284, 396 |
| Sau3AI | GATC | 1 cut(s) | 78 |
| Sau96I | GGNCC | 2 cut(s) | 4, 389 |
| ScrFI | CCNGG | 2 cut(s) | 231, 387 |
| SetI | ASST | 8 cut(s) | 9, 72, 139, 212, 276, 288, 397, 458 |
| SfaNI | GCATC | 1 cut(s) | 224 |
| SfcI | CTRYAG | 1 cut(s) | 60 |
| SinI | GGWCC | 2 cut(s) | 4, 389 |
| Sse9I | AATT | 5 cut(s) | 25, 46, 161, 259, 408 |
| SspI | AATATT | 1 cut(s) | 361 |
| SspMI | CTAG | 1 cut(s) | 84 |
| StyD4I | CCNGG | 2 cut(s) | 229, 385 |
| StyI | CCWWGG | 1 cut(s) | 344 |
| TaiI | ACGT | 2 cut(s) | 139, 212 |
| TaqI | TCGA | 1 cut(s) | 72 |
| TasI | AATT | 5 cut(s) | 25, 46, 161, 259, 408 |
| TfiI | GAWTC | 1 cut(s) | 254 |
| Tru1I | TTAA | 1 cut(s) | 481 |
| Tru9I | TTAA | 1 cut(s) | 481 |
| TseI | GCWGC | 2 cut(s) | 283, 395 |
| TspDTI | ATGAA | 1 cut(s) | 80 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 389 |
| XapI | RAATTY | 3 cut(s) | 25, 46, 408 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 265, 342 |
| XmiI | GTMKAC | 1 cut(s) | 72 |
| XspI | CTAG | 1 cut(s) | 84 |