Reverse transcriptase (RNA-dependent DNA polymerase)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 556 |
| AccII | CGCG | 2 cut(s) | 295, 456 |
| AciI | CCGC | 3 cut(s) | 293, 454, 456 |
| AclWI | GGATC | 1 cut(s) | 108 |
| AcuI | CTGAAG | 1 cut(s) | 497 |
| AflIII | ACRYGT | 1 cut(s) | 368 |
| AgsI | TTSAA | 1 cut(s) | 625 |
| AluBI | AGCT | 5 cut(s) | 168, 176, 198, 239, 481 |
| AluI | AGCT | 5 cut(s) | 168, 176, 198, 239, 481 |
| Alw21I | GWGCWC | 1 cut(s) | 368 |
| Alw26I | GTCTC | 1 cut(s) | 230 |
| Alw44I | GTGCAC | 1 cut(s) | 364 |
| AlwI | GGATC | 1 cut(s) | 108 |
| Ama87I | CYCGRG | 1 cut(s) | 219 |
| AoxI | GGCC | 2 cut(s) | 263, 471 |
| ApaLI | GTGCAC | 1 cut(s) | 364 |
| AseI | ATTAAT | 1 cut(s) | 608 |
| AspS9I | GGNCC | 2 cut(s) | 303, 472 |
| AsuC2I | CCSGG | 2 cut(s) | 233, 327 |
| AsuHPI | GGTGA | 2 cut(s) | 36, 640 |
| AvaI | CYCGRG | 1 cut(s) | 219 |
| AvaII | GGWCC | 1 cut(s) | 303 |
| BaeGI | GKGCMC | 1 cut(s) | 368 |
| BanI | GGYRCC | 1 cut(s) | 556 |
| Bbv12I | GWGCWC | 1 cut(s) | 368 |
| BcnI | CCSGG | 2 cut(s) | 233, 327 |
| BcoDI | GTCTC | 1 cut(s) | 230 |
| BfaI | CTAG | 1 cut(s) | 195 |
| BisI | GCNGC | 1 cut(s) | 454 |
| BlsI | GCNGC | 1 cut(s) | 455 |
| Bme1390I | CCNGG | 2 cut(s) | 233, 327 |
| Bme18I | GGWCC | 1 cut(s) | 303 |
| BmeT110I | CYCGRG | 1 cut(s) | 219 |
| BmgT120I | GGNCC | 2 cut(s) | 303, 472 |
| BmiI | GGNNCC | 1 cut(s) | 558 |
| BmrFI | CCNGG | 2 cut(s) | 233, 327 |
| BmrI | ACTGGG | 1 cut(s) | 245 |
| BmuI | ACTGGG | 1 cut(s) | 245 |
| BpuMI | CCSGG | 2 cut(s) | 233, 327 |
| BsaBI | GATNNNNATC | 1 cut(s) | 279 |
| BsaI | GGTCTC | 1 cut(s) | 230 |
| BsaJI | CCNNGG | 2 cut(s) | 454, 569 |
| Bse1I | ACTGG | 1 cut(s) | 251 |
| Bse3DI | GCAATG | 1 cut(s) | 189 |
| Bse8I | GATNNNNATC | 1 cut(s) | 279 |
| BseDI | CCNNGG | 2 cut(s) | 454, 569 |
| BseGI | GGATG | 1 cut(s) | 543 |
| BseJI | GATNNNNATC | 1 cut(s) | 279 |
| BseMI | GCAATG | 1 cut(s) | 189 |
| BseMII | CTCAG | 1 cut(s) | 396 |
| BseNI | ACTGG | 1 cut(s) | 251 |
| BseSI | GKGCMC | 1 cut(s) | 368 |
| Bsh1236I | CGCG | 2 cut(s) | 295, 456 |
| BshFI | GGCC | 2 cut(s) | 265, 473 |
| BshNI | GGYRCC | 1 cut(s) | 556 |
| BsiHKAI | GWGCWC | 1 cut(s) | 368 |
| BsiHKCI | CYCGRG | 1 cut(s) | 219 |
| BsiSI | CCGG | 3 cut(s) | 233, 272, 326 |
| BslFI | GGGAC | 1 cut(s) | 215 |
| BsmAI | GTCTC | 1 cut(s) | 230 |
| BsmFI | GGGAC | 1 cut(s) | 215 |
| BsmI | GAATGC | 2 cut(s) | 602, 620 |
| BsnI | GGCC | 2 cut(s) | 265, 473 |
| Bso31I | GGTCTC | 1 cut(s) | 230 |
| BsoBI | CYCGRG | 1 cut(s) | 219 |
| Bsp1286I | GDGCHC | 1 cut(s) | 368 |
| Bsp143I | GATC | 1 cut(s) | 113 |
| BspACI | CCGC | 3 cut(s) | 293, 454, 456 |
| BspANI | GGCC | 2 cut(s) | 265, 473 |
| BspCNI | CTCAG | 1 cut(s) | 397 |
| BspFNI | CGCG | 2 cut(s) | 295, 456 |
| BspLI | GGNNCC | 1 cut(s) | 558 |
| BspPI | GGATC | 1 cut(s) | 108 |
| BspT107I | GGYRCC | 1 cut(s) | 556 |
| BspTNI | GGTCTC | 1 cut(s) | 230 |
| BsrDI | GCAATG | 1 cut(s) | 189 |
| BsrI | ACTGG | 1 cut(s) | 251 |
| BssECI | CCNNGG | 2 cut(s) | 454, 569 |
| BssMI | GATC | 1 cut(s) | 113 |
| BssT1I | CCWWGG | 1 cut(s) | 569 |
| Bst4CI | ACNGT | 1 cut(s) | 428 |
| Bst6I | CTCTTC | 1 cut(s) | 250 |
| BstDEI | CTNAG | 1 cut(s) | 405 |
| BstDSI | CCRYGG | 1 cut(s) | 454 |
| BstF5I | GGATG | 1 cut(s) | 543 |
| BstFNI | CGCG | 2 cut(s) | 295, 456 |
| BstKTI | GATC | 1 cut(s) | 116 |
| BstMAI | GTCTC | 1 cut(s) | 230 |
| BstMBI | GATC | 1 cut(s) | 113 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 285 |
| BstNSI | RCATGY | 1 cut(s) | 372 |
| BstSCI | CCNGG | 2 cut(s) | 231, 325 |
| BstSLI | GKGCMC | 1 cut(s) | 368 |
| BstUI | CGCG | 2 cut(s) | 295, 456 |
| BsuRI | GGCC | 2 cut(s) | 265, 473 |
| BtgI | CCRYGG | 1 cut(s) | 454 |
| BtsCI | GGATG | 1 cut(s) | 543 |
| BtsIMutI | CAGTG | 2 cut(s) | 258, 433 |
| Cfr13I | GGNCC | 2 cut(s) | 303, 472 |
| Cfr42I | CCGCGG | 1 cut(s) | 457 |
| CviAII | CATG | 7 cut(s) | 154, 307, 369, 588, 593, 601, 642 |
| CviJI | RGCY | 9 cut(s) | 94, 168, 176, 198, 239, 265, 473, 481, 514 |
| CviKI_1 | RGCY | 9 cut(s) | 94, 168, 176, 198, 239, 265, 473, 481, 514 |
| DdeI | CTNAG | 1 cut(s) | 405 |
| DpnI | GATC | 1 cut(s) | 115 |
| DpnII | GATC | 1 cut(s) | 113 |
| Eam1104I | CTCTTC | 1 cut(s) | 250 |
| EarI | CTCTTC | 1 cut(s) | 250 |
| Eco130I | CCWWGG | 1 cut(s) | 569 |
| Eco147I | AGGCCT | 1 cut(s) | 265 |
| Eco31I | GGTCTC | 1 cut(s) | 230 |
| Eco47I | GGWCC | 1 cut(s) | 303 |
| Eco57I | CTGAAG | 1 cut(s) | 497 |
| Eco88I | CYCGRG | 1 cut(s) | 219 |
| EcoO109I | RGGNCCY | 1 cut(s) | 472 |
| EcoT14I | CCWWGG | 1 cut(s) | 569 |
| EcoT22I | ATGCAT | 2 cut(s) | 602, 643 |
| ErhI | CCWWGG | 1 cut(s) | 569 |
| FaeI | CATG | 7 cut(s) | 157, 310, 372, 591, 596, 604, 645 |
| FaiI | YATR | 9 cut(s) | 155, 308, 370, 374, 589, 594, 602, 639, 643 |
| FaqI | GGGAC | 1 cut(s) | 215 |
| FatI | CATG | 7 cut(s) | 153, 306, 368, 587, 592, 600, 641 |
| FauI | CCCGC | 1 cut(s) | 449 |
| Fnu4HI | GCNGC | 1 cut(s) | 454 |
| FokI | GGATG | 1 cut(s) | 550 |
| Fsp4HI | GCNGC | 1 cut(s) | 454 |
| FspBI | CTAG | 1 cut(s) | 195 |
| GluI | GCNGC | 1 cut(s) | 454 |
| HaeIII | GGCC | 2 cut(s) | 265, 473 |
| HapII | CCGG | 3 cut(s) | 233, 272, 326 |
| Hin1II | CATG | 7 cut(s) | 157, 310, 372, 591, 596, 604, 645 |
| HindIII | AAGCTT | 1 cut(s) | 479 |
| HinfI | GANTC | 3 cut(s) | 9, 109, 340 |
| HpaII | CCGG | 3 cut(s) | 233, 272, 326 |
| HphI | GGTGA | 2 cut(s) | 36, 640 |
| Hpy166II | GTNNAC | 1 cut(s) | 366 |
| Hpy8I | GTNNAC | 1 cut(s) | 366 |
| HpyAV | CCTTC | 1 cut(s) | 168 |
| HpyCH4III | ACNGT | 1 cut(s) | 428 |
| HpyCH4V | TGCA | 9 cut(s) | 88, 187, 279, 351, 366, 587, 600, 620, 641 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 285 |
| HpyF3I | CTNAG | 1 cut(s) | 405 |
| Hsp92II | CATG | 7 cut(s) | 157, 310, 372, 591, 596, 604, 645 |
| KspI | CCGCGG | 1 cut(s) | 457 |
| Kzo9I | GATC | 1 cut(s) | 113 |
| MaeI | CTAG | 1 cut(s) | 195 |
| MaeIII | GTNAC | 2 cut(s) | 382, 628 |
| MalI | GATC | 1 cut(s) | 115 |
| MboI | GATC | 1 cut(s) | 113 |
| MboII | GAAGA | 2 cut(s) | 237, 275 |
| MhlI | GDGCHC | 1 cut(s) | 368 |
| MluCI | AATT | 2 cut(s) | 30, 609 |
| MnlI | CCTC | 8 cut(s) | 88, 115, 157, 253, 366, 463, 489, 576 |
| Mph1103I | ATGCAT | 2 cut(s) | 602, 643 |
| MseI | TTAA | 1 cut(s) | 608 |
| MspA1I | CMGCKG | 1 cut(s) | 456 |
| MspI | CCGG | 3 cut(s) | 233, 272, 326 |
| MspR9I | CCNGG | 2 cut(s) | 233, 327 |
| Mva1269I | GAATGC | 2 cut(s) | 602, 620 |
| MvnI | CGCG | 2 cut(s) | 295, 456 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 285 |
| NciI | CCSGG | 2 cut(s) | 233, 327 |
| NdeII | GATC | 1 cut(s) | 113 |
| NlaIII | CATG | 7 cut(s) | 157, 310, 372, 591, 596, 604, 645 |
| NlaIV | GGNNCC | 1 cut(s) | 558 |
| NmuCI | GTSAC | 2 cut(s) | 382, 628 |
| NsiI | ATGCAT | 2 cut(s) | 602, 643 |
| NspI | RCATGY | 1 cut(s) | 372 |
| PceI | AGGCCT | 1 cut(s) | 265 |
| PciI | ACATGT | 1 cut(s) | 368 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 292 |
| PctI | GAATGC | 2 cut(s) | 602, 620 |
| PfeI | GAWTC | 3 cut(s) | 9, 109, 340 |
| PkrI | GCNGC | 1 cut(s) | 455 |
| PscI | ACATGT | 1 cut(s) | 368 |
| PshBI | ATTAAT | 1 cut(s) | 608 |
| PspN4I | GGNNCC | 1 cut(s) | 558 |
| PspPI | GGNCC | 2 cut(s) | 303, 472 |
| SacII | CCGCGG | 1 cut(s) | 457 |
| SaqAI | TTAA | 1 cut(s) | 608 |
| SatI | GCNGC | 1 cut(s) | 454 |
| Sau3AI | GATC | 1 cut(s) | 113 |
| Sau96I | GGNCC | 2 cut(s) | 303, 472 |
| ScrFI | CCNGG | 2 cut(s) | 233, 327 |
| SduI | GDGCHC | 1 cut(s) | 368 |
| SetI | ASST | 8 cut(s) | 24, 170, 178, 200, 241, 305, 483, 630 |
| Sfr303I | CCGCGG | 1 cut(s) | 457 |
| SgrBI | CCGCGG | 1 cut(s) | 457 |
| SinI | GGWCC | 1 cut(s) | 303 |
| Sse9I | AATT | 2 cut(s) | 30, 609 |
| SseBI | AGGCCT | 1 cut(s) | 265 |
| SsiI | CCGC | 3 cut(s) | 293, 454, 456 |
| SspMI | CTAG | 1 cut(s) | 195 |
| StuI | AGGCCT | 1 cut(s) | 265 |
| StyD4I | CCNGG | 2 cut(s) | 231, 325 |
| StyI | CCWWGG | 1 cut(s) | 569 |
| TaaI | ACNGT | 1 cut(s) | 428 |
| TaqI | TCGA | 2 cut(s) | 107, 112 |
| TaqII | GACCGA | 1 cut(s) | 401 |
| TasI | AATT | 2 cut(s) | 30, 609 |
| TauI | GCSGC | 1 cut(s) | 456 |
| TfiI | GAWTC | 3 cut(s) | 9, 109, 340 |
| Tru1I | TTAA | 1 cut(s) | 608 |
| Tru9I | TTAA | 1 cut(s) | 608 |
| TscAI | CASTG | 2 cut(s) | 258, 433 |
| TseFI | GTSAC | 2 cut(s) | 382, 628 |
| Tsp45I | GTSAC | 2 cut(s) | 382, 628 |
| TspDTI | ATGAA | 2 cut(s) | 142, 609 |
| TspRI | CASTG | 2 cut(s) | 258, 433 |
| VneI | GTGCAC | 1 cut(s) | 364 |
| VpaK11BI | GGWCC | 1 cut(s) | 303 |
| VspI | ATTAAT | 1 cut(s) | 608 |
| XceI | RCATGY | 1 cut(s) | 372 |
| XspI | CTAG | 1 cut(s) | 195 |
| Zsp2I | ATGCAT | 2 cut(s) | 602, 643 |