ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 10 - 147 | 1.7e-19 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 88 |
| AciI | CCGC | 1 cut(s) | 88 |
| AcoI | YGGCCR | 1 cut(s) | 48 |
| AcsI | RAATTY | 3 cut(s) | 7, 409, 442 |
| AcuI | CTGAAG | 2 cut(s) | 135, 293 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 72 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 232 |
| AjnI | CCWGG | 1 cut(s) | 219 |
| AluBI | AGCT | 4 cut(s) | 56, 78, 160, 341 |
| AluI | AGCT | 4 cut(s) | 56, 78, 160, 341 |
| Alw26I | GTCTC | 3 cut(s) | 219, 240, 298 |
| AoxI | GGCC | 2 cut(s) | 48, 400 |
| ApoI | RAATTY | 3 cut(s) | 7, 409, 442 |
| BaeGI | GKGCMC | 1 cut(s) | 140 |
| BalI | TGGCCA | 1 cut(s) | 50 |
| BccI | CCATC | 1 cut(s) | 14 |
| BciT130I | CCWGG | 1 cut(s) | 221 |
| BcoDI | GTCTC | 3 cut(s) | 219, 240, 298 |
| BfaI | CTAG | 4 cut(s) | 41, 254, 327, 345 |
| Bme1390I | CCNGG | 1 cut(s) | 221 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 232 |
| BmrFI | CCNGG | 1 cut(s) | 221 |
| BpmI | CTGGAG | 1 cut(s) | 94 |
| BsaI | GGTCTC | 1 cut(s) | 219 |
| BsaJI | CCNNGG | 1 cut(s) | 220 |
| BsaWI | WCCGGW | 1 cut(s) | 184 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 72 |
| Bse1I | ACTGG | 1 cut(s) | 77 |
| Bse3DI | GCAATG | 1 cut(s) | 279 |
| BseBI | CCWGG | 1 cut(s) | 221 |
| BseDI | CCNNGG | 1 cut(s) | 220 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 72 |
| BseMI | GCAATG | 1 cut(s) | 279 |
| BseNI | ACTGG | 1 cut(s) | 77 |
| BseRI | GAGGAG | 2 cut(s) | 225, 228 |
| BseSI | GKGCMC | 1 cut(s) | 140 |
| BshFI | GGCC | 2 cut(s) | 50, 402 |
| BsiSI | CCGG | 1 cut(s) | 185 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 72 |
| BsmAI | GTCTC | 3 cut(s) | 219, 240, 298 |
| BsnI | GGCC | 2 cut(s) | 50, 402 |
| Bso31I | GGTCTC | 1 cut(s) | 219 |
| Bsp1286I | GDGCHC | 1 cut(s) | 140 |
| BspACI | CCGC | 1 cut(s) | 88 |
| BspANI | GGCC | 2 cut(s) | 50, 402 |
| BspTNI | GGTCTC | 1 cut(s) | 219 |
| BsrBI | CCGCTC | 1 cut(s) | 88 |
| BsrDI | GCAATG | 1 cut(s) | 279 |
| BsrI | ACTGG | 1 cut(s) | 77 |
| BssECI | CCNNGG | 1 cut(s) | 220 |
| Bst2UI | CCWGG | 1 cut(s) | 221 |
| BstDEI | CTNAG | 3 cut(s) | 82, 269, 416 |
| BstMAI | GTCTC | 3 cut(s) | 219, 240, 298 |
| BstNI | CCWGG | 1 cut(s) | 221 |
| BstSCI | CCNGG | 1 cut(s) | 219 |
| BstSLI | GKGCMC | 1 cut(s) | 140 |
| BsuRI | GGCC | 2 cut(s) | 50, 402 |
| BtsIMutI | CAGTG | 1 cut(s) | 134 |
| CviAII | CATG | 2 cut(s) | 113, 350 |
| CviJI | RGCY | 8 cut(s) | 50, 56, 78, 160, 180, 341, 402, 438 |
| CviKI_1 | RGCY | 8 cut(s) | 50, 56, 78, 160, 180, 341, 402, 438 |
| DdeI | CTNAG | 3 cut(s) | 82, 269, 416 |
| DriI | GACNNNNNGTC | 1 cut(s) | 232 |
| EaeI | YGGCCR | 1 cut(s) | 48 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 232 |
| Eco147I | AGGCCT | 1 cut(s) | 402 |
| Eco31I | GGTCTC | 1 cut(s) | 219 |
| Eco57I | CTGAAG | 2 cut(s) | 135, 293 |
| EcoRI | GAATTC | 1 cut(s) | 7 |
| EcoRII | CCWGG | 1 cut(s) | 219 |
| EcoT22I | ATGCAT | 1 cut(s) | 103 |
| FaeI | CATG | 2 cut(s) | 116, 353 |
| FaiI | YATR | 7 cut(s) | 114, 335, 351, 358, 360, 371, 435 |
| FatI | CATG | 2 cut(s) | 112, 349 |
| FspBI | CTAG | 4 cut(s) | 41, 254, 327, 345 |
| GsuI | CTGGAG | 1 cut(s) | 94 |
| HaeIII | GGCC | 2 cut(s) | 50, 402 |
| HapII | CCGG | 1 cut(s) | 185 |
| Hin1II | CATG | 2 cut(s) | 116, 353 |
| HindIII | AAGCTT | 1 cut(s) | 54 |
| HinfI | GANTC | 2 cut(s) | 91, 192 |
| HpaII | CCGG | 1 cut(s) | 185 |
| Hpy166II | GTNNAC | 1 cut(s) | 305 |
| Hpy188I | TCNGA | 1 cut(s) | 312 |
| Hpy188III | TCNNGA | 1 cut(s) | 327 |
| Hpy8I | GTNNAC | 1 cut(s) | 305 |
| HpyAV | CCTTC | 2 cut(s) | 388, 392 |
| HpyCH4V | TGCA | 2 cut(s) | 101, 384 |
| HpyF3I | CTNAG | 3 cut(s) | 82, 269, 416 |
| Hsp92II | CATG | 2 cut(s) | 116, 353 |
| LmnI | GCTCC | 2 cut(s) | 75, 346 |
| LpnPI | CCDG | 6 cut(s) | 58, 198, 206, 233, 285, 432 |
| MaeI | CTAG | 4 cut(s) | 41, 254, 327, 345 |
| MbiI | CCGCTC | 1 cut(s) | 88 |
| MboII | GAAGA | 1 cut(s) | 315 |
| MhlI | GDGCHC | 1 cut(s) | 140 |
| MlsI | TGGCCA | 1 cut(s) | 50 |
| MluCI | AATT | 4 cut(s) | 7, 199, 409, 442 |
| MluNI | TGGCCA | 1 cut(s) | 50 |
| MlyI | GAGTC | 1 cut(s) | 85 |
| MnlI | CCTC | 7 cut(s) | 203, 249, 253, 269, 323, 413, 421 |
| Mox20I | TGGCCA | 1 cut(s) | 50 |
| Mph1103I | ATGCAT | 1 cut(s) | 103 |
| MscI | TGGCCA | 1 cut(s) | 50 |
| MseI | TTAA | 6 cut(s) | 36, 96, 174, 198, 407, 440 |
| Msp20I | TGGCCA | 1 cut(s) | 50 |
| MspI | CCGG | 1 cut(s) | 185 |
| MspR9I | CCNGG | 1 cut(s) | 221 |
| MvaI | CCWGG | 1 cut(s) | 221 |
| NlaIII | CATG | 2 cut(s) | 116, 353 |
| NsiI | ATGCAT | 1 cut(s) | 103 |
| PceI | AGGCCT | 1 cut(s) | 402 |
| PfeI | GAWTC | 1 cut(s) | 192 |
| PleI | GAGTC | 1 cut(s) | 85 |
| PpsI | GAGTC | 1 cut(s) | 85 |
| Psp6I | CCWGG | 1 cut(s) | 219 |
| PspGI | CCWGG | 1 cut(s) | 219 |
| SaqAI | TTAA | 6 cut(s) | 36, 96, 174, 198, 407, 440 |
| SchI | GAGTC | 1 cut(s) | 85 |
| ScrFI | CCNGG | 1 cut(s) | 221 |
| SduI | GDGCHC | 1 cut(s) | 140 |
| SetI | ASST | 5 cut(s) | 58, 80, 162, 334, 343 |
| Sse9I | AATT | 4 cut(s) | 7, 199, 409, 442 |
| SseBI | AGGCCT | 1 cut(s) | 402 |
| SsiI | CCGC | 1 cut(s) | 88 |
| SspI | AATATT | 1 cut(s) | 28 |
| SspMI | CTAG | 4 cut(s) | 41, 254, 327, 345 |
| StuI | AGGCCT | 1 cut(s) | 402 |
| StyD4I | CCNGG | 1 cut(s) | 219 |
| TaqI | TCGA | 1 cut(s) | 208 |
| TasI | AATT | 4 cut(s) | 7, 199, 409, 442 |
| TfiI | GAWTC | 1 cut(s) | 192 |
| Tru1I | TTAA | 6 cut(s) | 36, 96, 174, 198, 407, 440 |
| Tru9I | TTAA | 6 cut(s) | 36, 96, 174, 198, 407, 440 |
| TscAI | CASTG | 1 cut(s) | 134 |
| TspDTI | ATGAA | 3 cut(s) | 101, 309, 350 |
| TspRI | CASTG | 1 cut(s) | 134 |
| XapI | RAATTY | 3 cut(s) | 7, 409, 442 |
| XbaI | TCTAGA | 1 cut(s) | 326 |
| XspI | CTAG | 4 cut(s) | 41, 254, 327, 345 |
| Zsp2I | ATGCAT | 1 cut(s) | 103 |