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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 620 |
| Acc16I | TGCGCA | 1 cut(s) | 216 |
| Acc36I | ACCTGC | 1 cut(s) | 620 |
| AccII | CGCG | 1 cut(s) | 116 |
| AciI | CCGC | 1 cut(s) | 114 |
| AcuI | CTGAAG | 1 cut(s) | 387 |
| AfaI | GTAC | 2 cut(s) | 222, 469 |
| AfeI | AGCGCT | 1 cut(s) | 8 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 136 |
| AgsI | TTSAA | 3 cut(s) | 19, 343, 573 |
| AjiI | CACGTC | 1 cut(s) | 145 |
| AjnI | CCWGG | 1 cut(s) | 366 |
| AluBI | AGCT | 2 cut(s) | 399, 497 |
| AluI | AGCT | 2 cut(s) | 399, 497 |
| Ama87I | CYCGRG | 1 cut(s) | 10 |
| Aor51HI | AGCGCT | 1 cut(s) | 8 |
| AoxI | GGCC | 2 cut(s) | 110, 406 |
| ApaI | GGGCCC | 1 cut(s) | 114 |
| ApeKI | GCWGC | 1 cut(s) | 212 |
| AspLEI | GCGC | 4 cut(s) | 9, 118, 184, 217 |
| AspS9I | GGNCC | 4 cut(s) | 110, 111, 193, 407 |
| AsuC2I | CCSGG | 1 cut(s) | 38 |
| AsuHPI | GGTGA | 1 cut(s) | 540 |
| AvaI | CYCGRG | 1 cut(s) | 10 |
| AvaII | GGWCC | 1 cut(s) | 193 |
| BaeGI | GKGCMC | 2 cut(s) | 114, 442 |
| BanII | GRGCYC | 2 cut(s) | 43, 114 |
| BbvI | GCAGC | 1 cut(s) | 199 |
| BceAI | ACGGC | 1 cut(s) | 65 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 141, 175 |
| BciT130I | CCWGG | 1 cut(s) | 368 |
| BciVI | GTATCC | 1 cut(s) | 489 |
| BcnI | CCSGG | 1 cut(s) | 38 |
| BfaI | CTAG | 2 cut(s) | 228, 396 |
| BfmI | CTRYAG | 1 cut(s) | 123 |
| BfoI | RGCGCY | 1 cut(s) | 10 |
| BfuAI | ACCTGC | 1 cut(s) | 620 |
| BfuI | GTATCC | 1 cut(s) | 489 |
| BisI | GCNGC | 1 cut(s) | 213 |
| BlsI | GCNGC | 1 cut(s) | 214 |
| Bme1390I | CCNGG | 2 cut(s) | 38, 368 |
| Bme18I | GGWCC | 1 cut(s) | 193 |
| BmeT110I | CYCGRG | 1 cut(s) | 10 |
| BmgBI | CACGTC | 1 cut(s) | 145 |
| BmgT120I | GGNCC | 4 cut(s) | 110, 111, 193, 407 |
| BmiI | GGNNCC | 4 cut(s) | 111, 112, 195, 288 |
| BmrFI | CCNGG | 2 cut(s) | 38, 368 |
| BmsI | GCATC | 4 cut(s) | 68, 169, 385, 539 |
| BpmI | CTGGAG | 1 cut(s) | 389 |
| BpuEI | CTTGAG | 1 cut(s) | 289 |
| BpuMI | CCSGG | 1 cut(s) | 38 |
| BsaJI | CCNNGG | 2 cut(s) | 130, 366 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 136 |
| BseBI | CCWGG | 1 cut(s) | 368 |
| BseDI | CCNNGG | 2 cut(s) | 130, 366 |
| BseGI | GGATG | 4 cut(s) | 184, 385, 418, 530 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 136 |
| BseSI | GKGCMC | 2 cut(s) | 114, 442 |
| BseXI | GCAGC | 1 cut(s) | 199 |
| Bsh1236I | CGCG | 1 cut(s) | 116 |
| BshFI | GGCC | 2 cut(s) | 112, 408 |
| BsiHKCI | CYCGRG | 1 cut(s) | 10 |
| BsiSI | CCGG | 2 cut(s) | 37, 46 |
| BslFI | GGGAC | 1 cut(s) | 179 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 136 |
| BsmFI | GGGAC | 1 cut(s) | 179 |
| BsnI | GGCC | 2 cut(s) | 112, 408 |
| BsoBI | CYCGRG | 1 cut(s) | 10 |
| Bsp120I | GGGCCC | 1 cut(s) | 110 |
| Bsp1286I | GDGCHC | 3 cut(s) | 43, 114, 442 |
| BspACI | CCGC | 1 cut(s) | 114 |
| BspANI | GGCC | 2 cut(s) | 112, 408 |
| BspFNI | CGCG | 1 cut(s) | 116 |
| BspLI | GGNNCC | 4 cut(s) | 111, 112, 195, 288 |
| BspMI | ACCTGC | 1 cut(s) | 620 |
| BspQI | GCTCTTC | 2 cut(s) | 406, 468 |
| BssECI | CCNNGG | 2 cut(s) | 130, 366 |
| Bst2UI | CCWGG | 1 cut(s) | 368 |
| Bst4CI | ACNGT | 4 cut(s) | 124, 225, 280, 318 |
| Bst6I | CTCTTC | 4 cut(s) | 99, 334, 406, 468 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 527 |
| BstC8I | GCNNGC | 6 cut(s) | 43, 57, 114, 165, 210, 240 |
| BstDSI | CCRYGG | 1 cut(s) | 130 |
| BstF5I | GGATG | 4 cut(s) | 184, 385, 418, 530 |
| BstFNI | CGCG | 1 cut(s) | 116 |
| BstH2I | RGCGCY | 1 cut(s) | 10 |
| BstHHI | GCGC | 4 cut(s) | 9, 118, 184, 217 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 42, 214, 239, 405, 527 |
| BstNI | CCWGG | 1 cut(s) | 368 |
| BstNSI | RCATGY | 5 cut(s) | 59, 167, 212, 221, 618 |
| BstSCI | CCNGG | 2 cut(s) | 36, 366 |
| BstSFI | CTRYAG | 1 cut(s) | 123 |
| BstSLI | GKGCMC | 2 cut(s) | 114, 442 |
| BstUI | CGCG | 1 cut(s) | 116 |
| BstV1I | GCAGC | 1 cut(s) | 199 |
| BsuI | GTATCC | 1 cut(s) | 489 |
| BsuRI | GGCC | 2 cut(s) | 112, 408 |
| BtgI | CCRYGG | 1 cut(s) | 130 |
| BtrI | CACGTC | 1 cut(s) | 145 |
| BtsCI | GGATG | 4 cut(s) | 184, 385, 418, 530 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 2 cut(s) | 105, 120 |
| BveI | ACCTGC | 1 cut(s) | 620 |
| Cac8I | GCNNGC | 6 cut(s) | 43, 57, 114, 165, 210, 240 |
| CfoI | GCGC | 4 cut(s) | 9, 118, 184, 217 |
| Cfr13I | GGNCC | 4 cut(s) | 110, 111, 193, 407 |
| Csp6I | GTAC | 2 cut(s) | 221, 468 |
| CviAII | CATG | 5 cut(s) | 56, 164, 209, 218, 615 |
| CviQI | GTAC | 2 cut(s) | 221, 468 |
| DraI | TTTAAA | 1 cut(s) | 586 |
| Eam1104I | CTCTTC | 4 cut(s) | 99, 334, 406, 468 |
| EarI | CTCTTC | 4 cut(s) | 99, 334, 406, 468 |
| Eco24I | GRGCYC | 2 cut(s) | 43, 114 |
| Eco47I | GGWCC | 1 cut(s) | 193 |
| Eco47III | AGCGCT | 1 cut(s) | 8 |
| Eco57I | CTGAAG | 1 cut(s) | 387 |
| Eco88I | CYCGRG | 1 cut(s) | 10 |
| EcoO109I | RGGNCCY | 2 cut(s) | 110, 407 |
| EcoRII | CCWGG | 1 cut(s) | 366 |
| EcoT22I | ATGCAT | 1 cut(s) | 61 |
| EcoT38I | GRGCYC | 2 cut(s) | 43, 114 |
| FaeI | CATG | 5 cut(s) | 59, 167, 212, 221, 618 |
| FaiI | YATR | 6 cut(s) | 57, 165, 191, 210, 219, 616 |
| FaqI | GGGAC | 1 cut(s) | 179 |
| FatI | CATG | 5 cut(s) | 55, 163, 208, 217, 614 |
| FauI | CCCGC | 1 cut(s) | 121 |
| Fnu4HI | GCNGC | 1 cut(s) | 213 |
| FokI | GGATG | 4 cut(s) | 191, 372, 405, 517 |
| FriOI | GRGCYC | 2 cut(s) | 43, 114 |
| Fsp4HI | GCNGC | 1 cut(s) | 213 |
| FspBI | CTAG | 2 cut(s) | 228, 396 |
| FspI | TGCGCA | 1 cut(s) | 216 |
| GlaI | GCGC | 4 cut(s) | 8, 117, 183, 216 |
| GluI | GCNGC | 1 cut(s) | 213 |
| GsuI | CTGGAG | 1 cut(s) | 389 |
| HaeII | RGCGCY | 1 cut(s) | 10 |
| HaeIII | GGCC | 2 cut(s) | 112, 408 |
| HapII | CCGG | 2 cut(s) | 37, 46 |
| HhaI | GCGC | 4 cut(s) | 9, 118, 184, 217 |
| Hin1II | CATG | 5 cut(s) | 59, 167, 212, 221, 618 |
| Hin6I | GCGC | 4 cut(s) | 7, 116, 182, 215 |
| HinP1I | GCGC | 4 cut(s) | 7, 116, 182, 215 |
| HinfI | GANTC | 2 cut(s) | 158, 485 |
| HpaII | CCGG | 2 cut(s) | 37, 46 |
| HphI | GGTGA | 1 cut(s) | 540 |
| Hpy166II | GTNNAC | 1 cut(s) | 620 |
| Hpy188III | TCNNGA | 3 cut(s) | 228, 482, 601 |
| Hpy8I | GTNNAC | 1 cut(s) | 620 |
| HpyAV | CCTTC | 3 cut(s) | 207, 399, 432 |
| HpyCH4III | ACNGT | 4 cut(s) | 124, 225, 280, 318 |
| HpyCH4IV | ACGT | 1 cut(s) | 144 |
| HpyCH4V | TGCA | 7 cut(s) | 59, 98, 167, 208, 376, 521, 530 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 42, 214, 239, 405, 527 |
| HpySE526I | ACGT | 1 cut(s) | 144 |
| Hsp92II | CATG | 5 cut(s) | 59, 167, 212, 221, 618 |
| HspAI | GCGC | 4 cut(s) | 7, 116, 182, 215 |
| LguI | GCTCTTC | 2 cut(s) | 406, 468 |
| LmnI | GCTCC | 3 cut(s) | 4, 286, 611 |
| Lsp1109I | GCAGC | 1 cut(s) | 199 |
| LweI | GCATC | 4 cut(s) | 68, 169, 385, 539 |
| MaeI | CTAG | 2 cut(s) | 228, 396 |
| MaeII | ACGT | 1 cut(s) | 144 |
| MboII | GAAGA | 7 cut(s) | 116, 315, 321, 384, 393, 417, 455 |
| MfeI | CAATTG | 1 cut(s) | 623 |
| MhlI | GDGCHC | 3 cut(s) | 43, 114, 442 |
| MluCI | AATT | 3 cut(s) | 334, 593, 623 |
| MlyI | GAGTC | 2 cut(s) | 167, 479 |
| MmeI | TCCRAC | 1 cut(s) | 534 |
| MnlI | CCTC | 5 cut(s) | 100, 337, 362, 426, 458 |
| Mph1103I | ATGCAT | 1 cut(s) | 61 |
| MseI | TTAA | 2 cut(s) | 540, 585 |
| MslI | CAYNNNNRTG | 1 cut(s) | 259 |
| MspI | CCGG | 2 cut(s) | 37, 46 |
| MspR9I | CCNGG | 2 cut(s) | 38, 368 |
| MunI | CAATTG | 1 cut(s) | 623 |
| MvaI | CCWGG | 1 cut(s) | 368 |
| MvnI | CGCG | 1 cut(s) | 116 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 42, 214, 239, 405, 527 |
| NciI | CCSGG | 1 cut(s) | 38 |
| NlaIII | CATG | 5 cut(s) | 59, 167, 212, 221, 618 |
| NlaIV | GGNNCC | 4 cut(s) | 111, 112, 195, 288 |
| NmeAIII | GCCGAG | 1 cut(s) | 587 |
| NsbI | TGCGCA | 1 cut(s) | 216 |
| NsiI | ATGCAT | 1 cut(s) | 61 |
| NspI | RCATGY | 5 cut(s) | 59, 167, 212, 221, 618 |
| PaeI | GCATGC | 3 cut(s) | 59, 167, 212 |
| PaqCI | CACCTGC | 1 cut(s) | 620 |
| PciSI | GCTCTTC | 2 cut(s) | 406, 468 |
| PkrI | GCNGC | 1 cut(s) | 214 |
| PleI | GAGTC | 2 cut(s) | 166, 479 |
| PpsI | GAGTC | 2 cut(s) | 166, 479 |
| Psp6I | CCWGG | 1 cut(s) | 366 |
| PspGI | CCWGG | 1 cut(s) | 366 |
| PspN4I | GGNNCC | 4 cut(s) | 111, 112, 195, 288 |
| PspOMI | GGGCCC | 1 cut(s) | 110 |
| PspPI | GGNCC | 4 cut(s) | 110, 111, 193, 407 |
| RsaI | GTAC | 2 cut(s) | 222, 469 |
| RsaNI | GTAC | 2 cut(s) | 221, 468 |
| RseI | CAYNNNNRTG | 1 cut(s) | 259 |
| SapI | GCTCTTC | 2 cut(s) | 406, 468 |
| SaqAI | TTAA | 2 cut(s) | 540, 585 |
| SatI | GCNGC | 1 cut(s) | 213 |
| Sau96I | GGNCC | 4 cut(s) | 110, 111, 193, 407 |
| SchI | GAGTC | 2 cut(s) | 167, 479 |
| ScrFI | CCNGG | 2 cut(s) | 38, 368 |
| SduI | GDGCHC | 3 cut(s) | 43, 114, 442 |
| SetI | ASST | 4 cut(s) | 147, 401, 499, 634 |
| SfaNI | GCATC | 4 cut(s) | 68, 169, 385, 539 |
| SfcI | CTRYAG | 1 cut(s) | 123 |
| SinI | GGWCC | 1 cut(s) | 193 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 259 |
| SmlI | CTYRAG | 1 cut(s) | 268 |
| SmoI | CTYRAG | 1 cut(s) | 268 |
| SphI | GCATGC | 3 cut(s) | 59, 167, 212 |
| Sse9I | AATT | 3 cut(s) | 334, 593, 623 |
| SsiI | CCGC | 1 cut(s) | 114 |
| SspI | AATATT | 1 cut(s) | 557 |
| SspMI | CTAG | 2 cut(s) | 228, 396 |
| StyD4I | CCNGG | 2 cut(s) | 36, 366 |
| TaaI | ACNGT | 4 cut(s) | 124, 225, 280, 318 |
| TaiI | ACGT | 1 cut(s) | 147 |
| TaqI | TCGA | 2 cut(s) | 499, 600 |
| TasI | AATT | 3 cut(s) | 334, 593, 623 |
| Tru1I | TTAA | 2 cut(s) | 540, 585 |
| Tru9I | TTAA | 2 cut(s) | 540, 585 |
| TscAI | CASTG | 2 cut(s) | 105, 127 |
| TseI | GCWGC | 1 cut(s) | 212 |
| TspRI | CASTG | 2 cut(s) | 105, 127 |
| VpaK11BI | GGWCC | 1 cut(s) | 193 |
| XbaI | TCTAGA | 1 cut(s) | 227 |
| XceI | RCATGY | 5 cut(s) | 59, 167, 212, 221, 618 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 364 |
| XspI | CTAG | 2 cut(s) | 228, 396 |
| Zsp2I | ATGCAT | 1 cut(s) | 61 |