ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_1 | PF00078 | 257 - 346 | 1.2e-07 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 328 |
| AccIII | TCCGGA | 1 cut(s) | 616 |
| AcoI | YGGCCR | 1 cut(s) | 806 |
| AcsI | RAATTY | 4 cut(s) | 40, 192, 372, 745 |
| AflII | CTTAAG | 1 cut(s) | 914 |
| AgsI | TTSAA | 6 cut(s) | 59, 89, 287, 718, 745, 835 |
| AluBI | AGCT | 2 cut(s) | 97, 1025 |
| AluI | AGCT | 2 cut(s) | 97, 1025 |
| Alw21I | GWGCWC | 1 cut(s) | 628 |
| Alw26I | GTCTC | 2 cut(s) | 273, 330 |
| Aor13HI | TCCGGA | 1 cut(s) | 616 |
| AoxI | GGCC | 2 cut(s) | 806, 948 |
| ApeKI | GCWGC | 1 cut(s) | 277 |
| ApoI | RAATTY | 4 cut(s) | 40, 192, 372, 745 |
| AseI | ATTAAT | 1 cut(s) | 27 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 192 |
| AspLEI | GCGC | 1 cut(s) | 277 |
| Bbv12I | GWGCWC | 1 cut(s) | 628 |
| BbvI | GCAGC | 1 cut(s) | 264 |
| BccI | CCATC | 3 cut(s) | 326, 482, 632 |
| BceAI | ACGGC | 1 cut(s) | 146 |
| BcoDI | GTCTC | 2 cut(s) | 273, 330 |
| BfaI | CTAG | 3 cut(s) | 174, 281, 750 |
| BfrI | CTTAAG | 1 cut(s) | 914 |
| BisI | GCNGC | 1 cut(s) | 278 |
| BlsI | GCNGC | 1 cut(s) | 279 |
| BpuEI | CTTGAG | 1 cut(s) | 83 |
| BsaI | GGTCTC | 1 cut(s) | 330 |
| BsaJI | CCNNGG | 3 cut(s) | 162, 816, 951 |
| BsaWI | WCCGGW | 1 cut(s) | 616 |
| BseAI | TCCGGA | 1 cut(s) | 616 |
| BseDI | CCNNGG | 3 cut(s) | 162, 816, 951 |
| BseGI | GGATG | 2 cut(s) | 13, 436 |
| BseMII | CTCAG | 1 cut(s) | 540 |
| BseRI | GAGGAG | 1 cut(s) | 599 |
| BseXI | GCAGC | 1 cut(s) | 264 |
| BseYI | CCCAGC | 1 cut(s) | 669 |
| Bsh1236I | CGCG | 1 cut(s) | 328 |
| BshFI | GGCC | 2 cut(s) | 808, 950 |
| BsiHKAI | GWGCWC | 1 cut(s) | 628 |
| BsiSI | CCGG | 1 cut(s) | 617 |
| BsmAI | GTCTC | 2 cut(s) | 273, 330 |
| BsmI | GAATGC | 1 cut(s) | 136 |
| BsnI | GGCC | 2 cut(s) | 808, 950 |
| Bso31I | GGTCTC | 1 cut(s) | 330 |
| Bsp1286I | GDGCHC | 1 cut(s) | 628 |
| Bsp13I | TCCGGA | 1 cut(s) | 616 |
| Bsp143I | GATC | 2 cut(s) | 10, 314 |
| Bsp19I | CCATGG | 1 cut(s) | 816 |
| Bsp68I | TCGCGA | 1 cut(s) | 328 |
| BspANI | GGCC | 2 cut(s) | 808, 950 |
| BspCNI | CTCAG | 1 cut(s) | 541 |
| BspEI | TCCGGA | 1 cut(s) | 616 |
| BspFNI | CGCG | 1 cut(s) | 328 |
| BspHI | TCATGA | 2 cut(s) | 235, 481 |
| BspTI | CTTAAG | 1 cut(s) | 914 |
| BspTNI | GGTCTC | 1 cut(s) | 330 |
| BssECI | CCNNGG | 3 cut(s) | 162, 816, 951 |
| BssMI | GATC | 2 cut(s) | 10, 314 |
| BssT1I | CCWWGG | 1 cut(s) | 816 |
| Bst4CI | ACNGT | 2 cut(s) | 341, 601 |
| BstAFI | CTTAAG | 1 cut(s) | 914 |
| BstC8I | GCNNGC | 2 cut(s) | 667, 867 |
| BstDEI | CTNAG | 2 cut(s) | 119, 549 |
| BstDSI | CCRYGG | 2 cut(s) | 162, 816 |
| BstF5I | GGATG | 2 cut(s) | 13, 436 |
| BstFNI | CGCG | 1 cut(s) | 328 |
| BstHHI | GCGC | 1 cut(s) | 277 |
| BstKTI | GATC | 2 cut(s) | 13, 317 |
| BstMAI | GTCTC | 2 cut(s) | 273, 330 |
| BstMBI | GATC | 2 cut(s) | 10, 314 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 103, 179, 875 |
| BstUI | CGCG | 1 cut(s) | 328 |
| BstV1I | GCAGC | 1 cut(s) | 264 |
| BsuRI | GGCC | 2 cut(s) | 808, 950 |
| BtgI | CCRYGG | 2 cut(s) | 162, 816 |
| BtsCI | GGATG | 2 cut(s) | 13, 436 |
| BtuMI | TCGCGA | 1 cut(s) | 328 |
| Cac8I | GCNNGC | 2 cut(s) | 667, 867 |
| CciI | TCATGA | 2 cut(s) | 235, 481 |
| CfoI | GCGC | 1 cut(s) | 277 |
| CviAII | CATG | 7 cut(s) | 45, 236, 272, 452, 482, 662, 817 |
| DdeI | CTNAG | 2 cut(s) | 119, 549 |
| DpnI | GATC | 2 cut(s) | 12, 316 |
| DpnII | GATC | 2 cut(s) | 10, 314 |
| EaeI | YGGCCR | 1 cut(s) | 806 |
| Eco130I | CCWWGG | 1 cut(s) | 816 |
| Eco31I | GGTCTC | 1 cut(s) | 330 |
| EcoRI | GAATTC | 1 cut(s) | 745 |
| EcoT14I | CCWWGG | 1 cut(s) | 816 |
| ErhI | CCWWGG | 1 cut(s) | 816 |
| FaeI | CATG | 7 cut(s) | 48, 239, 275, 455, 485, 665, 820 |
| FatI | CATG | 7 cut(s) | 44, 235, 271, 451, 481, 661, 816 |
| Fnu4HI | GCNGC | 1 cut(s) | 278 |
| FokI | GGATG | 1 cut(s) | 443 |
| Fsp4HI | GCNGC | 1 cut(s) | 278 |
| FspBI | CTAG | 3 cut(s) | 174, 281, 750 |
| GlaI | GCGC | 1 cut(s) | 276 |
| GluI | GCNGC | 1 cut(s) | 278 |
| GsaI | CCCAGC | 1 cut(s) | 673 |
| HaeIII | GGCC | 2 cut(s) | 808, 950 |
| HapII | CCGG | 1 cut(s) | 617 |
| HhaI | GCGC | 1 cut(s) | 277 |
| Hin1II | CATG | 7 cut(s) | 48, 239, 275, 455, 485, 665, 820 |
| Hin6I | GCGC | 1 cut(s) | 275 |
| HinP1I | GCGC | 1 cut(s) | 275 |
| HindIII | AAGCTT | 1 cut(s) | 1023 |
| HinfI | GANTC | 6 cut(s) | 382, 413, 613, 788, 850, 898 |
| HpaII | CCGG | 1 cut(s) | 617 |
| Hpy166II | GTNNAC | 1 cut(s) | 166 |
| Hpy188I | TCNGA | 2 cut(s) | 418, 955 |
| Hpy188III | TCNNGA | 8 cut(s) | 17, 236, 287, 327, 482, 617, 635, 718 |
| Hpy8I | GTNNAC | 1 cut(s) | 166 |
| HpyCH4III | ACNGT | 2 cut(s) | 341, 601 |
| HpyCH4V | TGCA | 3 cut(s) | 445, 857, 939 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 103, 179, 875 |
| HpyF3I | CTNAG | 2 cut(s) | 119, 549 |
| Hsp92II | CATG | 7 cut(s) | 48, 239, 275, 455, 485, 665, 820 |
| HspAI | GCGC | 1 cut(s) | 275 |
| Kpn2I | TCCGGA | 1 cut(s) | 616 |
| Kzo9I | GATC | 2 cut(s) | 10, 314 |
| LmnI | GCTCC | 2 cut(s) | 460, 631 |
| LpnPI | CCDG | 8 cut(s) | 30, 287, 364, 492, 561, 630, 648, 655 |
| Lsp1109I | GCAGC | 1 cut(s) | 264 |
| MaeI | CTAG | 3 cut(s) | 174, 281, 750 |
| MaeIII | GTNAC | 2 cut(s) | 514, 538 |
| MalI | GATC | 2 cut(s) | 12, 316 |
| MboI | GATC | 2 cut(s) | 10, 314 |
| MboII | GAAGA | 3 cut(s) | 77, 390, 706 |
| MhlI | GDGCHC | 1 cut(s) | 628 |
| MlyI | GAGTC | 1 cut(s) | 376 |
| MmeI | TCCRAC | 1 cut(s) | 661 |
| MnlI | CCTC | 8 cut(s) | 172, 208, 232, 540, 577, 682, 775, 961 |
| MroI | TCCGGA | 1 cut(s) | 616 |
| MroXI | GAANNNNTTC | 1 cut(s) | 192 |
| MseI | TTAA | 8 cut(s) | 27, 36, 426, 471, 591, 915, 963, 1005 |
| MslI | CAYNNNNRTG | 3 cut(s) | 129, 450, 486 |
| MspCI | CTTAAG | 1 cut(s) | 914 |
| MspI | CCGG | 1 cut(s) | 617 |
| Mva1269I | GAATGC | 1 cut(s) | 136 |
| MvnI | CGCG | 1 cut(s) | 328 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 103, 179, 875 |
| NcoI | CCATGG | 1 cut(s) | 816 |
| NdeII | GATC | 2 cut(s) | 10, 314 |
| NlaIII | CATG | 7 cut(s) | 48, 239, 275, 455, 485, 665, 820 |
| NruI | TCGCGA | 1 cut(s) | 328 |
| PagI | TCATGA | 2 cut(s) | 235, 481 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 382 |
| PctI | GAATGC | 1 cut(s) | 136 |
| PdmI | GAANNNNTTC | 1 cut(s) | 192 |
| PfeI | GAWTC | 5 cut(s) | 413, 613, 788, 850, 898 |
| PkrI | GCNGC | 1 cut(s) | 279 |
| PleI | GAGTC | 1 cut(s) | 376 |
| PpsI | GAGTC | 1 cut(s) | 376 |
| PshBI | ATTAAT | 1 cut(s) | 27 |
| PspFI | CCCAGC | 1 cut(s) | 669 |
| RruI | TCGCGA | 1 cut(s) | 328 |
| RseI | CAYNNNNRTG | 3 cut(s) | 129, 450, 486 |
| SaqAI | TTAA | 8 cut(s) | 27, 36, 426, 471, 591, 915, 963, 1005 |
| SatI | GCNGC | 1 cut(s) | 278 |
| Sau3AI | GATC | 2 cut(s) | 10, 314 |
| SchI | GAGTC | 1 cut(s) | 376 |
| SduI | GDGCHC | 1 cut(s) | 628 |
| SetI | ASST | 5 cut(s) | 99, 511, 550, 693, 1027 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 129, 450, 486 |
| SmlI | CTYRAG | 2 cut(s) | 98, 914 |
| SmoI | CTYRAG | 2 cut(s) | 98, 914 |
| SspMI | CTAG | 3 cut(s) | 174, 281, 750 |
| StyI | CCWWGG | 1 cut(s) | 816 |
| TaaI | ACNGT | 2 cut(s) | 341, 601 |
| TaqI | TCGA | 2 cut(s) | 365, 883 |
| TfiI | GAWTC | 5 cut(s) | 413, 613, 788, 850, 898 |
| Tru1I | TTAA | 8 cut(s) | 27, 36, 426, 471, 591, 915, 963, 1005 |
| Tru9I | TTAA | 8 cut(s) | 27, 36, 426, 471, 591, 915, 963, 1005 |
| TseI | GCWGC | 1 cut(s) | 277 |
| TspDTI | ATGAA | 5 cut(s) | 33, 243, 347, 470, 626 |
| Vha464I | CTTAAG | 1 cut(s) | 914 |
| VspI | ATTAAT | 1 cut(s) | 27 |
| XapI | RAATTY | 4 cut(s) | 40, 192, 372, 745 |
| XmnI | GAANNNNTTC | 1 cut(s) | 192 |
| XspI | CTAG | 3 cut(s) | 174, 281, 750 |