Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 674, 824 |
| AciI | CCGC | 1 cut(s) | 165 |
| AclWI | GGATC | 3 cut(s) | 621, 729, 822 |
| AcsI | RAATTY | 1 cut(s) | 34 |
| AcuI | CTGAAG | 1 cut(s) | 294 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 188 |
| AgsI | TTSAA | 3 cut(s) | 47, 413, 493 |
| AhlI | ACTAGT | 1 cut(s) | 415 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 241, 273 |
| AluBI | AGCT | 5 cut(s) | 123, 242, 474, 638, 661 |
| AluI | AGCT | 5 cut(s) | 123, 242, 474, 638, 661 |
| Alw26I | GTCTC | 1 cut(s) | 9 |
| AlwI | GGATC | 3 cut(s) | 621, 729, 822 |
| AoxI | GGCC | 2 cut(s) | 564, 602 |
| ApeKI | GCWGC | 1 cut(s) | 288 |
| ApoI | RAATTY | 1 cut(s) | 34 |
| AseI | ATTAAT | 2 cut(s) | 210, 591 |
| AspS9I | GGNCC | 3 cut(s) | 50, 565, 602 |
| AvaII | GGWCC | 1 cut(s) | 50 |
| AxyI | CCTNAGG | 1 cut(s) | 609 |
| BaeGI | GKGCMC | 1 cut(s) | 94 |
| BbvI | GCAGC | 1 cut(s) | 275 |
| BccI | CCATC | 4 cut(s) | 416, 592, 699, 710 |
| BcoDI | GTCTC | 1 cut(s) | 9 |
| BcuI | ACTAGT | 1 cut(s) | 415 |
| BfaI | CTAG | 3 cut(s) | 120, 416, 865 |
| BisI | GCNGC | 1 cut(s) | 289 |
| BlsI | GCNGC | 1 cut(s) | 290 |
| Bme18I | GGWCC | 1 cut(s) | 50 |
| BmgT120I | GGNCC | 3 cut(s) | 50, 565, 602 |
| BmiI | GGNNCC | 1 cut(s) | 603 |
| BoxI | GACNNNNGTC | 1 cut(s) | 318 |
| BpmI | CTGGAG | 1 cut(s) | 781 |
| BpuEI | CTTGAG | 2 cut(s) | 325, 488 |
| BsaAI | YACGTR | 1 cut(s) | 204 |
| BsaBI | GATNNNNATC | 1 cut(s) | 720 |
| BsaJI | CCNNGG | 1 cut(s) | 53 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 188 |
| Bse1I | ACTGG | 1 cut(s) | 652 |
| Bse21I | CCTNAGG | 1 cut(s) | 609 |
| Bse8I | GATNNNNATC | 1 cut(s) | 720 |
| BseDI | CCNNGG | 1 cut(s) | 53 |
| BseGI | GGATG | 2 cut(s) | 397, 721 |
| BseJI | GATNNNNATC | 1 cut(s) | 720 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 188 |
| BseMII | CTCAG | 3 cut(s) | 213, 600, 648 |
| BseNI | ACTGG | 1 cut(s) | 652 |
| BseRI | GAGGAG | 1 cut(s) | 328 |
| BseSI | GKGCMC | 1 cut(s) | 94 |
| BseXI | GCAGC | 1 cut(s) | 275 |
| BsgI | GTGCAG | 1 cut(s) | 274 |
| BshFI | GGCC | 2 cut(s) | 566, 604 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 188 |
| BsmAI | GTCTC | 1 cut(s) | 9 |
| BsmI | GAATGC | 2 cut(s) | 290, 439 |
| BsnI | GGCC | 2 cut(s) | 566, 604 |
| Bsp1286I | GDGCHC | 1 cut(s) | 94 |
| Bsp143I | GATC | 3 cut(s) | 613, 721, 814 |
| Bsp19I | CCATGG | 1 cut(s) | 53 |
| BspACI | CCGC | 1 cut(s) | 165 |
| BspANI | GGCC | 2 cut(s) | 566, 604 |
| BspCNI | CTCAG | 3 cut(s) | 214, 601, 649 |
| BspLI | GGNNCC | 1 cut(s) | 603 |
| BspPI | GGATC | 3 cut(s) | 621, 729, 822 |
| BsrI | ACTGG | 1 cut(s) | 652 |
| BssECI | CCNNGG | 1 cut(s) | 53 |
| BssMI | GATC | 3 cut(s) | 613, 721, 814 |
| BssNAI | GTATAC | 1 cut(s) | 675 |
| BssT1I | CCWWGG | 1 cut(s) | 53 |
| Bst1107I | GTATAC | 1 cut(s) | 675 |
| Bst4CI | ACNGT | 1 cut(s) | 860 |
| BstBAI | YACGTR | 1 cut(s) | 204 |
| BstC8I | GCNNGC | 1 cut(s) | 486 |
| BstDEI | CTNAG | 7 cut(s) | 186, 222, 470, 477, 609, 657, 683 |
| BstDSI | CCRYGG | 1 cut(s) | 53 |
| BstF5I | GGATG | 2 cut(s) | 397, 721 |
| BstKTI | GATC | 3 cut(s) | 616, 724, 817 |
| BstMAI | GTCTC | 1 cut(s) | 9 |
| BstMBI | GATC | 3 cut(s) | 613, 721, 814 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 563, 667 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 318 |
| BstSLI | GKGCMC | 1 cut(s) | 94 |
| BstV1I | GCAGC | 1 cut(s) | 275 |
| BstZ17I | GTATAC | 1 cut(s) | 675 |
| Bsu36I | CCTNAGG | 1 cut(s) | 609 |
| BsuRI | GGCC | 2 cut(s) | 566, 604 |
| BtgI | CCRYGG | 1 cut(s) | 53 |
| BtsCI | GGATG | 2 cut(s) | 397, 721 |
| Cac8I | GCNNGC | 1 cut(s) | 486 |
| Cfr13I | GGNCC | 3 cut(s) | 50, 565, 602 |
| CviAII | CATG | 7 cut(s) | 54, 95, 132, 449, 539, 553, 748 |
| CviJI | RGCY | 9 cut(s) | 123, 242, 391, 474, 566, 604, 638, 661, 709 |
| CviKI_1 | RGCY | 9 cut(s) | 123, 242, 391, 474, 566, 604, 638, 661, 709 |
| DdeI | CTNAG | 7 cut(s) | 186, 222, 470, 477, 609, 657, 683 |
| DpnI | GATC | 3 cut(s) | 615, 723, 816 |
| DpnII | GATC | 3 cut(s) | 613, 721, 814 |
| Eco130I | CCWWGG | 1 cut(s) | 53 |
| Eco47I | GGWCC | 1 cut(s) | 50 |
| Eco57I | CTGAAG | 1 cut(s) | 294 |
| Eco81I | CCTNAGG | 1 cut(s) | 609 |
| EcoO109I | RGGNCCY | 2 cut(s) | 565, 602 |
| EcoT14I | CCWWGG | 1 cut(s) | 53 |
| ErhI | CCWWGG | 1 cut(s) | 53 |
| FaeI | CATG | 7 cut(s) | 57, 98, 135, 452, 542, 556, 751 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 509, 541 |
| FatI | CATG | 7 cut(s) | 53, 94, 131, 448, 538, 552, 747 |
| FauI | CCCGC | 1 cut(s) | 158 |
| FblI | GTMKAC | 2 cut(s) | 674, 824 |
| Fnu4HI | GCNGC | 1 cut(s) | 289 |
| FokI | GGATG | 2 cut(s) | 384, 728 |
| Fsp4HI | GCNGC | 1 cut(s) | 289 |
| FspBI | CTAG | 3 cut(s) | 120, 416, 865 |
| GluI | GCNGC | 1 cut(s) | 289 |
| GsuI | CTGGAG | 1 cut(s) | 781 |
| HaeIII | GGCC | 2 cut(s) | 566, 604 |
| Hin1II | CATG | 7 cut(s) | 57, 98, 135, 452, 542, 556, 751 |
| HinfI | GANTC | 2 cut(s) | 763, 821 |
| Hpy166II | GTNNAC | 4 cut(s) | 550, 675, 792, 825 |
| Hpy188I | TCNGA | 2 cut(s) | 313, 658 |
| Hpy188III | TCNNGA | 7 cut(s) | 342, 379, 493, 505, 608, 760, 818 |
| Hpy8I | GTNNAC | 4 cut(s) | 550, 675, 792, 825 |
| Hpy99I | CGWCG | 1 cut(s) | 219 |
| HpyCH4III | ACNGT | 1 cut(s) | 860 |
| HpyCH4IV | ACGT | 2 cut(s) | 128, 203 |
| HpyCH4V | TGCA | 6 cut(s) | 135, 291, 442, 542, 811, 844 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 563, 667 |
| HpyF3I | CTNAG | 7 cut(s) | 186, 222, 470, 477, 609, 657, 683 |
| HpySE526I | ACGT | 2 cut(s) | 128, 203 |
| Hsp92II | CATG | 7 cut(s) | 57, 98, 135, 452, 542, 556, 751 |
| Kzo9I | GATC | 3 cut(s) | 613, 721, 814 |
| LpnPI | CCDG | 9 cut(s) | 158, 392, 548, 566, 621, 665, 745, 780, 797 |
| Lsp1109I | GCAGC | 1 cut(s) | 275 |
| MaeI | CTAG | 3 cut(s) | 120, 416, 865 |
| MaeII | ACGT | 2 cut(s) | 128, 203 |
| MalI | GATC | 3 cut(s) | 615, 723, 816 |
| MboI | GATC | 3 cut(s) | 613, 721, 814 |
| MboII | GAAGA | 2 cut(s) | 641, 731 |
| MhlI | GDGCHC | 1 cut(s) | 94 |
| MluCI | AATT | 8 cut(s) | 34, 76, 256, 324, 355, 443, 588, 592 |
| MlyI | GAGTC | 2 cut(s) | 772, 830 |
| MmeI | TCCRAC | 2 cut(s) | 261, 491 |
| MnlI | CCTC | 9 cut(s) | 126, 217, 346, 349, 375, 578, 604, 615, 793 |
| MseI | TTAA | 9 cut(s) | 75, 125, 210, 354, 372, 393, 591, 623, 753 |
| Mva1269I | GAATGC | 2 cut(s) | 290, 439 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 563, 667 |
| NcoI | CCATGG | 1 cut(s) | 53 |
| NdeII | GATC | 3 cut(s) | 613, 721, 814 |
| NlaIII | CATG | 7 cut(s) | 57, 98, 135, 452, 542, 556, 751 |
| NlaIV | GGNNCC | 1 cut(s) | 603 |
| PctI | GAATGC | 2 cut(s) | 290, 439 |
| PkrI | GCNGC | 1 cut(s) | 290 |
| PleI | GAGTC | 2 cut(s) | 771, 829 |
| PpsI | GAGTC | 2 cut(s) | 771, 829 |
| Ppu21I | YACGTR | 1 cut(s) | 204 |
| PshAI | GACNNNNGTC | 1 cut(s) | 318 |
| PshBI | ATTAAT | 2 cut(s) | 210, 591 |
| PspN4I | GGNNCC | 1 cut(s) | 603 |
| PspPI | GGNCC | 3 cut(s) | 50, 565, 602 |
| SaqAI | TTAA | 9 cut(s) | 75, 125, 210, 354, 372, 393, 591, 623, 753 |
| SatI | GCNGC | 1 cut(s) | 289 |
| Sau3AI | GATC | 3 cut(s) | 613, 721, 814 |
| Sau96I | GGNCC | 3 cut(s) | 50, 565, 602 |
| SchI | GAGTC | 2 cut(s) | 772, 830 |
| SduI | GDGCHC | 1 cut(s) | 94 |
| SinI | GGWCC | 1 cut(s) | 50 |
| SmlI | CTYRAG | 2 cut(s) | 340, 503 |
| SmoI | CTYRAG | 2 cut(s) | 340, 503 |
| SpeI | ACTAGT | 1 cut(s) | 415 |
| Sse9I | AATT | 8 cut(s) | 34, 76, 256, 324, 355, 443, 588, 592 |
| SsiI | CCGC | 1 cut(s) | 165 |
| SspMI | CTAG | 3 cut(s) | 120, 416, 865 |
| StyI | CCWWGG | 1 cut(s) | 53 |
| TaaI | ACNGT | 1 cut(s) | 860 |
| TaiI | ACGT | 2 cut(s) | 131, 206 |
| TaqI | TCGA | 2 cut(s) | 214, 570 |
| TasI | AATT | 8 cut(s) | 34, 76, 256, 324, 355, 443, 588, 592 |
| Tru1I | TTAA | 9 cut(s) | 75, 125, 210, 354, 372, 393, 591, 623, 753 |
| Tru9I | TTAA | 9 cut(s) | 75, 125, 210, 354, 372, 393, 591, 623, 753 |
| TseI | GCWGC | 1 cut(s) | 288 |
| TspDTI | ATGAA | 6 cut(s) | 111, 437, 454, 527, 648, 731 |
| TspGWI | ACGGA | 1 cut(s) | 152 |
| VpaK11BI | GGWCC | 1 cut(s) | 50 |
| VspI | ATTAAT | 2 cut(s) | 210, 591 |
| XapI | RAATTY | 1 cut(s) | 34 |
| XmiI | GTMKAC | 2 cut(s) | 674, 824 |
| XspI | CTAG | 3 cut(s) | 120, 416, 865 |