ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1743 |
| AccB1I | GGYRCC | 2 cut(s) | 1393, 1766 |
| AccI | GTMKAC | 1 cut(s) | 623 |
| AccII | CGCG | 1 cut(s) | 375 |
| AccIII | TCCGGA | 1 cut(s) | 592 |
| AciI | CCGC | 7 cut(s) | 122, 373, 811, 871, 935, 1688, 1770 |
| AclWI | GGATC | 5 cut(s) | 613, 851, 915, 932, 945 |
| AcoI | YGGCCR | 3 cut(s) | 474, 630, 1656 |
| AcsI | RAATTY | 6 cut(s) | 41, 165, 842, 1004, 1010, 1285 |
| AcuI | CTGAAG | 3 cut(s) | 50, 1134, 1519 |
| AfaI | GTAC | 3 cut(s) | 584, 944, 1261 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 22, 57, 1649 |
| AflII | CTTAAG | 2 cut(s) | 455, 1091 |
| AgeI | ACCGGT | 2 cut(s) | 1201, 1426 |
| AgsI | TTSAA | 9 cut(s) | 257, 285, 298, 418, 949, 996, 1010, 1016, 1619 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1418 |
| AjiI | CACGTC | 1 cut(s) | 1379 |
| AjnI | CCWGG | 1 cut(s) | 1408 |
| Alw21I | GWGCWC | 2 cut(s) | 186, 592 |
| Alw26I | GTCTC | 2 cut(s) | 752, 1234 |
| AlwI | GGATC | 5 cut(s) | 613, 851, 915, 932, 945 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1808 |
| Ama87I | CYCGRG | 1 cut(s) | 1175 |
| Aor13HI | TCCGGA | 1 cut(s) | 592 |
| AoxI | GGCC | 5 cut(s) | 474, 630, 891, 1371, 1656 |
| ApeKI | GCWGC | 7 cut(s) | 654, 1400, 1589, 1732, 1735, 1772, 1787 |
| ApoI | RAATTY | 6 cut(s) | 41, 165, 842, 1004, 1010, 1285 |
| AseI | ATTAAT | 1 cut(s) | 1353 |
| AsiGI | ACCGGT | 2 cut(s) | 1201, 1426 |
| AspLEI | GCGC | 2 cut(s) | 267, 1744 |
| AspS9I | GGNCC | 4 cut(s) | 25, 1199, 1424, 1757 |
| AsuC2I | CCSGG | 3 cut(s) | 696, 1061, 1650 |
| AsuHPI | GGTGA | 3 cut(s) | 5, 40, 332 |
| AsuII | TTCGAA | 1 cut(s) | 775 |
| AvaI | CYCGRG | 1 cut(s) | 1175 |
| AvaII | GGWCC | 4 cut(s) | 25, 1199, 1424, 1757 |
| BalI | TGGCCA | 2 cut(s) | 476, 1658 |
| BamHI | GGATCC | 1 cut(s) | 937 |
| BanI | GGYRCC | 2 cut(s) | 1393, 1766 |
| BanII | GRGCYC | 1 cut(s) | 592 |
| Bbv12I | GWGCWC | 2 cut(s) | 186, 592 |
| BbvCI | CCTCAGC | 1 cut(s) | 1506 |
| BbvI | GCAGC | 7 cut(s) | 641, 1412, 1601, 1719, 1722, 1774, 1784 |
| BccI | CCATC | 9 cut(s) | 31, 319, 573, 770, 1086, 1372, 1620, 1667, 1699 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1642, 1676 |
| BciT130I | CCWGG | 1 cut(s) | 1410 |
| BciVI | GTATCC | 1 cut(s) | 1143 |
| BcnI | CCSGG | 3 cut(s) | 696, 1061, 1650 |
| BcoDI | GTCTC | 2 cut(s) | 752, 1234 |
| BfaI | CTAG | 3 cut(s) | 515, 755, 960 |
| BfmI | CTRYAG | 5 cut(s) | 918, 1143, 1486, 1776, 1782 |
| BfrI | CTTAAG | 2 cut(s) | 455, 1091 |
| BfuI | GTATCC | 1 cut(s) | 1143 |
| BglII | AGATCT | 1 cut(s) | 451 |
| BisI | GCNGC | 9 cut(s) | 123, 655, 1401, 1590, 1733, 1736, 1770, 1773, 1788 |
| BlsI | GCNGC | 9 cut(s) | 124, 656, 1402, 1591, 1734, 1737, 1771, 1774, 1789 |
| Bme1390I | CCNGG | 4 cut(s) | 696, 1061, 1410, 1650 |
| Bme18I | GGWCC | 4 cut(s) | 25, 1199, 1424, 1757 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1418 |
| BmeT110I | CYCGRG | 1 cut(s) | 1175 |
| BmgBI | CACGTC | 1 cut(s) | 1379 |
| BmgT120I | GGNCC | 4 cut(s) | 25, 1199, 1424, 1757 |
| BmiI | GGNNCC | 3 cut(s) | 939, 1395, 1768 |
| BmrFI | CCNGG | 4 cut(s) | 696, 1061, 1410, 1650 |
| BmrI | ACTGGG | 1 cut(s) | 150 |
| BmsI | GCATC | 5 cut(s) | 52, 184, 276, 798, 829 |
| BmuI | ACTGGG | 1 cut(s) | 150 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 173, 205, 749, 781 |
| BpmI | CTGGAG | 2 cut(s) | 789, 1197 |
| Bpu10I | CCTNAGC | 2 cut(s) | 227, 1506 |
| Bpu14I | TTCGAA | 1 cut(s) | 775 |
| BpuEI | CTTGAG | 1 cut(s) | 1240 |
| BpuMI | CCSGG | 3 cut(s) | 696, 1061, 1650 |
| Bsa29I | ATCGAT | 1 cut(s) | 1662 |
| BsaAI | YACGTR | 1 cut(s) | 410 |
| BsaI | GGTCTC | 1 cut(s) | 752 |
| BsaJI | CCNNGG | 5 cut(s) | 739, 849, 1388, 1475, 1698 |
| BsaWI | WCCGGW | 3 cut(s) | 592, 1201, 1426 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 22, 57, 1649 |
| Bse118I | RCCGGY | 5 cut(s) | 628, 1201, 1305, 1426, 1550 |
| Bse1I | ACTGG | 2 cut(s) | 145, 894 |
| BseAI | TCCGGA | 1 cut(s) | 592 |
| BseBI | CCWGG | 1 cut(s) | 1410 |
| BseCI | ATCGAT | 1 cut(s) | 1662 |
| BseDI | CCNNGG | 5 cut(s) | 739, 849, 1388, 1475, 1698 |
| BseGI | GGATG | 5 cut(s) | 67, 241, 820, 1078, 1691 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 22, 57, 1649 |
| BseMII | CTCAG | 1 cut(s) | 1520 |
| BseNI | ACTGG | 2 cut(s) | 145, 894 |
| BseRI | GAGGAG | 1 cut(s) | 938 |
| BseXI | GCAGC | 7 cut(s) | 641, 1412, 1601, 1719, 1722, 1774, 1784 |
| Bsh1236I | CGCG | 1 cut(s) | 375 |
| Bsh1285I | CGRYCG | 1 cut(s) | 914 |
| BshFI | GGCC | 5 cut(s) | 476, 632, 893, 1373, 1658 |
| BshNI | GGYRCC | 2 cut(s) | 1393, 1766 |
| BshTI | ACCGGT | 2 cut(s) | 1201, 1426 |
| BshVI | ATCGAT | 1 cut(s) | 1662 |
| BsiEI | CGRYCG | 1 cut(s) | 914 |
| BsiHKAI | GWGCWC | 2 cut(s) | 186, 592 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1175 |
| BsiSI | CCGG | 9 cut(s) | 593, 629, 696, 1060, 1202, 1306, 1427, 1551, 1649 |
| BslFI | GGGAC | 2 cut(s) | 1549, 1598 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 22, 57, 1649 |
| BsmAI | GTCTC | 2 cut(s) | 752, 1234 |
| BsmFI | GGGAC | 2 cut(s) | 1549, 1598 |
| BsnI | GGCC | 5 cut(s) | 476, 632, 893, 1373, 1658 |
| Bso31I | GGTCTC | 1 cut(s) | 752 |
| BsoBI | CYCGRG | 1 cut(s) | 1175 |
| Bsp119I | TTCGAA | 1 cut(s) | 775 |
| Bsp1286I | GDGCHC | 2 cut(s) | 186, 592 |
| Bsp13I | TCCGGA | 1 cut(s) | 592 |
| Bsp143I | GATC | 7 cut(s) | 451, 605, 856, 907, 937, 1241, 1705 |
| BspACI | CCGC | 7 cut(s) | 122, 373, 811, 871, 935, 1688, 1770 |
| BspANI | GGCC | 5 cut(s) | 476, 632, 893, 1373, 1658 |
| BspCNI | CTCAG | 1 cut(s) | 1519 |
| BspDI | ATCGAT | 1 cut(s) | 1662 |
| BspEI | TCCGGA | 1 cut(s) | 592 |
| BspFNI | CGCG | 1 cut(s) | 375 |
| BspHI | TCATGA | 1 cut(s) | 169 |
| BspLI | GGNNCC | 3 cut(s) | 939, 1395, 1768 |
| BspMAI | CTGCAG | 1 cut(s) | 922 |
| BspPI | GGATC | 5 cut(s) | 613, 851, 915, 932, 945 |
| BspT104I | TTCGAA | 1 cut(s) | 775 |
| BspT107I | GGYRCC | 2 cut(s) | 1393, 1766 |
| BspTI | CTTAAG | 2 cut(s) | 455, 1091 |
| BspTNI | GGTCTC | 1 cut(s) | 752 |
| BsrFI | RCCGGY | 5 cut(s) | 628, 1201, 1305, 1426, 1550 |
| BsrI | ACTGG | 2 cut(s) | 145, 894 |
| BssAI | RCCGGY | 5 cut(s) | 628, 1201, 1305, 1426, 1550 |
| BssECI | CCNNGG | 5 cut(s) | 739, 849, 1388, 1475, 1698 |
| BssMI | GATC | 7 cut(s) | 451, 605, 856, 907, 937, 1241, 1705 |
| BssNAI | GTATAC | 1 cut(s) | 624 |
| BssT1I | CCWWGG | 5 cut(s) | 739, 849, 1388, 1475, 1698 |
| Bst1107I | GTATAC | 1 cut(s) | 624 |
| Bst2UI | CCWGG | 1 cut(s) | 1410 |
| Bst4CI | ACNGT | 3 cut(s) | 1249, 1331, 1752 |
| Bst6I | CTCTTC | 3 cut(s) | 1018, 1311, 1574 |
| BstAFI | CTTAAG | 2 cut(s) | 455, 1091 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 524, 1595 |
| BstBAI | YACGTR | 1 cut(s) | 410 |
| BstBI | TTCGAA | 1 cut(s) | 775 |
| BstC8I | GCNNGC | 3 cut(s) | 491, 1398, 1740 |
| BstDEI | CTNAG | 3 cut(s) | 227, 1506, 1827 |
| BstF5I | GGATG | 5 cut(s) | 67, 241, 820, 1078, 1691 |
| BstFNI | CGCG | 1 cut(s) | 375 |
| BstHHI | GCGC | 2 cut(s) | 267, 1744 |
| BstKTI | GATC | 7 cut(s) | 454, 608, 859, 910, 940, 1244, 1708 |
| BstMAI | GTCTC | 2 cut(s) | 752, 1234 |
| BstMBI | GATC | 7 cut(s) | 451, 605, 856, 907, 937, 1241, 1705 |
| BstMCI | CGRYCG | 1 cut(s) | 914 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 524, 817, 926, 1455, 1595, 1741, 1778, 1787 |
| BstNI | CCWGG | 1 cut(s) | 1410 |
| BstNSI | RCATGY | 3 cut(s) | 1229, 1598, 1742 |
| BstSCI | CCNGG | 4 cut(s) | 694, 1059, 1408, 1648 |
| BstSFI | CTRYAG | 5 cut(s) | 918, 1143, 1486, 1776, 1782 |
| BstUI | CGCG | 1 cut(s) | 375 |
| BstV1I | GCAGC | 7 cut(s) | 641, 1412, 1601, 1719, 1722, 1774, 1784 |
| BstX2I | RGATCY | 3 cut(s) | 451, 856, 937 |
| BstYI | RGATCY | 3 cut(s) | 451, 856, 937 |
| BstZ17I | GTATAC | 1 cut(s) | 624 |
| Bsu15I | ATCGAT | 1 cut(s) | 1662 |
| BsuI | GTATCC | 1 cut(s) | 1143 |
| BsuRI | GGCC | 5 cut(s) | 476, 632, 893, 1373, 1658 |
| BsuTUI | ATCGAT | 1 cut(s) | 1662 |
| BtrI | CACGTC | 1 cut(s) | 1379 |
| BtsCI | GGATG | 5 cut(s) | 67, 241, 820, 1078, 1691 |
| BtsI | GCAGTG | 1 cut(s) | 1525 |
| BtsIMutI | CAGTG | 1 cut(s) | 1525 |
| Cac8I | GCNNGC | 3 cut(s) | 491, 1398, 1740 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1808 |
| CciI | TCATGA | 1 cut(s) | 169 |
| CfoI | GCGC | 2 cut(s) | 267, 1744 |
| Cfr10I | RCCGGY | 5 cut(s) | 628, 1201, 1305, 1426, 1550 |
| Cfr13I | GGNCC | 4 cut(s) | 25, 1199, 1424, 1757 |
| ClaI | ATCGAT | 1 cut(s) | 1662 |
| CpoI | CGGWCCG | 1 cut(s) | 1424 |
| CseI | GACGC | 1 cut(s) | 1595 |
| Csp6I | GTAC | 3 cut(s) | 583, 943, 1260 |
| CspAI | ACCGGT | 2 cut(s) | 1201, 1426 |
| CspI | CGGWCCG | 1 cut(s) | 1424 |
| CviAII | CATG | 9 cut(s) | 170, 271, 1102, 1184, 1226, 1439, 1595, 1654, 1739 |
| CviQI | GTAC | 3 cut(s) | 583, 943, 1260 |
| DdeI | CTNAG | 3 cut(s) | 227, 1506, 1827 |
| DpnI | GATC | 7 cut(s) | 453, 607, 858, 909, 939, 1243, 1707 |
| DpnII | GATC | 7 cut(s) | 451, 605, 856, 907, 937, 1241, 1705 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1418 |
| EaeI | YGGCCR | 3 cut(s) | 474, 630, 1656 |
| Eam1104I | CTCTTC | 3 cut(s) | 1018, 1311, 1574 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1418 |
| EarI | CTCTTC | 3 cut(s) | 1018, 1311, 1574 |
| EciI | GGCGGA | 2 cut(s) | 860, 950 |
| Ecl136II | GAGCTC | 1 cut(s) | 590 |
| Eco130I | CCWWGG | 5 cut(s) | 739, 849, 1388, 1475, 1698 |
| Eco147I | AGGCCT | 1 cut(s) | 1373 |
| Eco24I | GRGCYC | 1 cut(s) | 592 |
| Eco31I | GGTCTC | 1 cut(s) | 752 |
| Eco47I | GGWCC | 4 cut(s) | 25, 1199, 1424, 1757 |
| Eco53kI | GAGCTC | 1 cut(s) | 590 |
| Eco57I | CTGAAG | 3 cut(s) | 50, 1134, 1519 |
| Eco88I | CYCGRG | 1 cut(s) | 1175 |
| EcoICRI | GAGCTC | 1 cut(s) | 590 |
| EcoO109I | RGGNCCY | 1 cut(s) | 25 |
| EcoRII | CCWGG | 1 cut(s) | 1408 |
| EcoT14I | CCWWGG | 5 cut(s) | 739, 849, 1388, 1475, 1698 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 429 |
| EcoT38I | GRGCYC | 1 cut(s) | 592 |
| ErhI | CCWWGG | 5 cut(s) | 739, 849, 1388, 1475, 1698 |
| FaeI | CATG | 9 cut(s) | 173, 274, 1105, 1187, 1229, 1442, 1598, 1657, 1742 |
| FaqI | GGGAC | 2 cut(s) | 1549, 1598 |
| FatI | CATG | 9 cut(s) | 169, 270, 1101, 1183, 1225, 1438, 1594, 1653, 1738 |
| FauI | CCCGC | 2 cut(s) | 380, 1695 |
| FblI | GTMKAC | 1 cut(s) | 623 |
| Fnu4HI | GCNGC | 9 cut(s) | 123, 655, 1401, 1590, 1733, 1736, 1770, 1773, 1788 |
| FokI | GGATG | 5 cut(s) | 74, 228, 807, 1065, 1678 |
| FriOI | GRGCYC | 1 cut(s) | 592 |
| Fsp4HI | GCNGC | 9 cut(s) | 123, 655, 1401, 1590, 1733, 1736, 1770, 1773, 1788 |
| FspBI | CTAG | 3 cut(s) | 515, 755, 960 |
| FspI | TGCGCA | 1 cut(s) | 1743 |
| GlaI | GCGC | 2 cut(s) | 266, 1743 |
| GluI | GCNGC | 9 cut(s) | 123, 655, 1401, 1590, 1733, 1736, 1770, 1773, 1788 |
| GsuI | CTGGAG | 2 cut(s) | 789, 1197 |
| HaeIII | GGCC | 5 cut(s) | 476, 632, 893, 1373, 1658 |
| HapII | CCGG | 9 cut(s) | 593, 629, 696, 1060, 1202, 1306, 1427, 1551, 1649 |
| HgaI | GACGC | 1 cut(s) | 1595 |
| HhaI | GCGC | 2 cut(s) | 267, 1744 |
| Hin1II | CATG | 9 cut(s) | 173, 274, 1105, 1187, 1229, 1442, 1598, 1657, 1742 |
| Hin6I | GCGC | 2 cut(s) | 265, 1742 |
| HinP1I | GCGC | 2 cut(s) | 265, 1742 |
| HincII | GTYRAC | 1 cut(s) | 1669 |
| HindII | GTYRAC | 1 cut(s) | 1669 |
| HindIII | AAGCTT | 2 cut(s) | 491, 1123 |
| HinfI | GANTC | 4 cut(s) | 79, 329, 963, 1360 |
| HpaII | CCGG | 9 cut(s) | 593, 629, 696, 1060, 1202, 1306, 1427, 1551, 1649 |
| HphI | GGTGA | 3 cut(s) | 5, 40, 332 |
| Hpy166II | GTNNAC | 5 cut(s) | 624, 1199, 1252, 1669, 1813 |
| Hpy188I | TCNGA | 5 cut(s) | 193, 334, 1157, 1424, 1538 |
| Hpy8I | GTNNAC | 5 cut(s) | 624, 1199, 1252, 1669, 1813 |
| HpyAV | CCTTC | 8 cut(s) | 16, 25, 91, 291, 347, 778, 1109, 1244 |
| HpyCH4III | ACNGT | 3 cut(s) | 1249, 1331, 1752 |
| HpyCH4IV | ACGT | 4 cut(s) | 409, 1378, 1481, 1624 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 524, 817, 926, 1455, 1595, 1741, 1778, 1787 |
| HpyF3I | CTNAG | 3 cut(s) | 227, 1506, 1827 |
| HpySE526I | ACGT | 4 cut(s) | 409, 1378, 1481, 1624 |
| Hsp92II | CATG | 9 cut(s) | 173, 274, 1105, 1187, 1229, 1442, 1598, 1657, 1742 |
| HspAI | GCGC | 2 cut(s) | 265, 1742 |
| Kpn2I | TCCGGA | 1 cut(s) | 592 |
| Kzo9I | GATC | 7 cut(s) | 451, 605, 856, 907, 937, 1241, 1705 |
| LmnI | GCTCC | 2 cut(s) | 595, 1805 |
| Lsp1109I | GCAGC | 7 cut(s) | 641, 1412, 1601, 1719, 1722, 1774, 1784 |
| LweI | GCATC | 5 cut(s) | 52, 184, 276, 798, 829 |
| MaeI | CTAG | 3 cut(s) | 515, 755, 960 |
| MaeII | ACGT | 4 cut(s) | 409, 1378, 1481, 1624 |
| MaeIII | GTNAC | 5 cut(s) | 273, 405, 1339, 1625, 1746 |
| MalI | GATC | 7 cut(s) | 453, 607, 858, 909, 939, 1243, 1707 |
| MboI | GATC | 7 cut(s) | 451, 605, 856, 907, 937, 1241, 1705 |
| MboII | GAAGA | 6 cut(s) | 1035, 1328, 1424, 1493, 1525, 1591 |
| MflI | RGATCY | 3 cut(s) | 451, 856, 937 |
| MhlI | GDGCHC | 2 cut(s) | 186, 592 |
| MlsI | TGGCCA | 2 cut(s) | 476, 1658 |
| MluNI | TGGCCA | 2 cut(s) | 476, 1658 |
| MlyI | GAGTC | 2 cut(s) | 338, 972 |
| MmeI | TCCRAC | 2 cut(s) | 1402, 1551 |
| Mox20I | TGGCCA | 2 cut(s) | 476, 1658 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 429 |
| MroI | TCCGGA | 1 cut(s) | 592 |
| MscI | TGGCCA | 2 cut(s) | 476, 1658 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1443 |
| Msp20I | TGGCCA | 2 cut(s) | 476, 1658 |
| MspA1I | CMGCKG | 1 cut(s) | 1775 |
| MspCI | CTTAAG | 2 cut(s) | 455, 1091 |
| MspI | CCGG | 9 cut(s) | 593, 629, 696, 1060, 1202, 1306, 1427, 1551, 1649 |
| MspR9I | CCNGG | 4 cut(s) | 696, 1061, 1410, 1650 |
| MvaI | CCWGG | 1 cut(s) | 1410 |
| MvnI | CGCG | 1 cut(s) | 375 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 524, 817, 926, 1455, 1595, 1741, 1778, 1787 |
| NciI | CCSGG | 3 cut(s) | 696, 1061, 1650 |
| NdeII | GATC | 7 cut(s) | 451, 605, 856, 907, 937, 1241, 1705 |
| NlaIII | CATG | 9 cut(s) | 173, 274, 1105, 1187, 1229, 1442, 1598, 1657, 1742 |
| NlaIV | GGNNCC | 3 cut(s) | 939, 1395, 1768 |
| NmuCI | GTSAC | 1 cut(s) | 1746 |
| NsbI | TGCGCA | 1 cut(s) | 1743 |
| NsiI | ATGCAT | 2 cut(s) | 6, 429 |
| NspI | RCATGY | 3 cut(s) | 1229, 1598, 1742 |
| NspV | TTCGAA | 1 cut(s) | 775 |
| PaeI | GCATGC | 1 cut(s) | 1742 |
| PaeR7I | CTCGAG | 1 cut(s) | 1175 |
| PagI | TCATGA | 1 cut(s) | 169 |
| PceI | AGGCCT | 1 cut(s) | 1373 |
| PfeI | GAWTC | 2 cut(s) | 79, 1360 |
| PinAI | ACCGGT | 2 cut(s) | 1201, 1426 |
| PkrI | GCNGC | 9 cut(s) | 124, 656, 1402, 1591, 1734, 1737, 1771, 1774, 1789 |
| PleI | GAGTC | 2 cut(s) | 337, 971 |
| PpsI | GAGTC | 2 cut(s) | 337, 971 |
| Ppu21I | YACGTR | 1 cut(s) | 410 |
| PpuMI | RGGWCCY | 1 cut(s) | 25 |
| PshBI | ATTAAT | 1 cut(s) | 1353 |
| Psp124BI | GAGCTC | 1 cut(s) | 592 |
| Psp5II | RGGWCCY | 1 cut(s) | 25 |
| Psp6I | CCWGG | 1 cut(s) | 1408 |
| PspGI | CCWGG | 1 cut(s) | 1408 |
| PspN4I | GGNNCC | 3 cut(s) | 939, 1395, 1768 |
| PspPI | GGNCC | 4 cut(s) | 25, 1199, 1424, 1757 |
| PspPPI | RGGWCCY | 1 cut(s) | 25 |
| PstI | CTGCAG | 1 cut(s) | 922 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1808 |
| PsuI | RGATCY | 3 cut(s) | 451, 856, 937 |
| PvuII | CAGCTG | 1 cut(s) | 1775 |
| RsaI | GTAC | 3 cut(s) | 584, 944, 1261 |
| RsaNI | GTAC | 3 cut(s) | 583, 943, 1260 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1443 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1424 |
| RsrII | CGGWCCG | 1 cut(s) | 1424 |
| SacI | GAGCTC | 1 cut(s) | 592 |
| SatI | GCNGC | 9 cut(s) | 123, 655, 1401, 1590, 1733, 1736, 1770, 1773, 1788 |
| Sau3AI | GATC | 7 cut(s) | 451, 605, 856, 907, 937, 1241, 1705 |
| Sau96I | GGNCC | 4 cut(s) | 25, 1199, 1424, 1757 |
| SchI | GAGTC | 2 cut(s) | 338, 972 |
| ScrFI | CCNGG | 4 cut(s) | 696, 1061, 1410, 1650 |
| SduI | GDGCHC | 2 cut(s) | 186, 592 |
| SfaNI | GCATC | 5 cut(s) | 52, 184, 276, 798, 829 |
| SfcI | CTRYAG | 5 cut(s) | 918, 1143, 1486, 1776, 1782 |
| Sfr274I | CTCGAG | 1 cut(s) | 1175 |
| SfuI | TTCGAA | 1 cut(s) | 775 |
| SinI | GGWCC | 4 cut(s) | 25, 1199, 1424, 1757 |
| SlaI | CTCGAG | 1 cut(s) | 1175 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1443 |
| SmlI | CTYRAG | 4 cut(s) | 455, 1091, 1175, 1255 |
| SmoI | CTYRAG | 4 cut(s) | 455, 1091, 1175, 1255 |
| SphI | GCATGC | 1 cut(s) | 1742 |
| SseBI | AGGCCT | 1 cut(s) | 1373 |
| SsiI | CCGC | 7 cut(s) | 122, 373, 811, 871, 935, 1688, 1770 |
| SspI | AATATT | 1 cut(s) | 552 |
| SspMI | CTAG | 3 cut(s) | 515, 755, 960 |
| SstI | GAGCTC | 1 cut(s) | 592 |
| StuI | AGGCCT | 1 cut(s) | 1373 |
| StyD4I | CCNGG | 4 cut(s) | 694, 1059, 1408, 1648 |
| StyI | CCWWGG | 5 cut(s) | 739, 849, 1388, 1475, 1698 |
| TaaI | ACNGT | 3 cut(s) | 1249, 1331, 1752 |
| TaiI | ACGT | 4 cut(s) | 412, 1381, 1484, 1627 |
| TaqI | TCGA | 7 cut(s) | 448, 775, 910, 966, 1071, 1176, 1662 |
| TaqII | GACCGA | 1 cut(s) | 928 |
| TatI | WGTACW | 1 cut(s) | 1259 |
| TauI | GCSGC | 2 cut(s) | 125, 1772 |
| TfiI | GAWTC | 2 cut(s) | 79, 1360 |
| TscAI | CASTG | 1 cut(s) | 1532 |
| TseFI | GTSAC | 1 cut(s) | 1746 |
| TseI | GCWGC | 7 cut(s) | 654, 1400, 1589, 1732, 1735, 1772, 1787 |
| Tsp45I | GTSAC | 1 cut(s) | 1746 |
| TspDTI | ATGAA | 4 cut(s) | 158, 701, 1118, 1592 |
| TspGWI | ACGGA | 2 cut(s) | 930, 1122 |
| TspRI | CASTG | 1 cut(s) | 1532 |
| Vha464I | CTTAAG | 2 cut(s) | 455, 1091 |
| VpaK11BI | GGWCC | 4 cut(s) | 25, 1199, 1424, 1757 |
| VspI | ATTAAT | 1 cut(s) | 1353 |
| XapI | RAATTY | 6 cut(s) | 41, 165, 842, 1004, 1010, 1285 |
| XceI | RCATGY | 3 cut(s) | 1229, 1598, 1742 |
| XhoI | CTCGAG | 1 cut(s) | 1175 |
| XmiI | GTMKAC | 1 cut(s) | 623 |
| XspI | CTAG | 3 cut(s) | 515, 755, 960 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 429 |