ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 537 |
| AccB1I | GGYRCC | 3 cut(s) | 817, 890, 1205 |
| AccII | CGCG | 1 cut(s) | 307 |
| AciI | CCGC | 5 cut(s) | 305, 637, 824, 946, 1093 |
| AclWI | GGATC | 2 cut(s) | 189, 882 |
| AcoI | YGGCCR | 1 cut(s) | 1002 |
| AcsI | RAATTY | 4 cut(s) | 345, 668, 730, 797 |
| AcvI | CACGTG | 1 cut(s) | 941 |
| AcyI | GRCGYC | 1 cut(s) | 430 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 244, 755, 900 |
| AflIII | ACRYGT | 2 cut(s) | 486, 940 |
| AgsI | TTSAA | 6 cut(s) | 28, 302, 368, 493, 570, 1284 |
| AjiI | CACGTC | 1 cut(s) | 1271 |
| AjnI | CCWGG | 2 cut(s) | 39, 237 |
| AluBI | AGCT | 6 cut(s) | 50, 269, 402, 574, 707, 1009 |
| AluI | AGCT | 6 cut(s) | 50, 269, 402, 574, 707, 1009 |
| Alw21I | GWGCWC | 2 cut(s) | 793, 961 |
| Alw26I | GTCTC | 1 cut(s) | 1242 |
| AlwI | GGATC | 2 cut(s) | 189, 882 |
| Ama87I | CYCGRG | 1 cut(s) | 804 |
| AoxI | GGCC | 4 cut(s) | 141, 240, 1002, 1286 |
| ApeKI | GCWGC | 1 cut(s) | 1009 |
| ApoI | RAATTY | 4 cut(s) | 345, 668, 730, 797 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 902, 934 |
| AspLEI | GCGC | 1 cut(s) | 215 |
| AspS9I | GGNCC | 2 cut(s) | 142, 1110 |
| AsuC2I | CCSGG | 1 cut(s) | 901 |
| AsuHPI | GGTGA | 1 cut(s) | 1065 |
| AvaI | CYCGRG | 1 cut(s) | 804 |
| AvaII | GGWCC | 1 cut(s) | 1110 |
| AxyI | CCTNAGG | 1 cut(s) | 129 |
| BalI | TGGCCA | 1 cut(s) | 1004 |
| BanI | GGYRCC | 3 cut(s) | 817, 890, 1205 |
| BbrPI | CACGTG | 1 cut(s) | 941 |
| Bbv12I | GWGCWC | 2 cut(s) | 793, 961 |
| BbvCI | CCTCAGC | 1 cut(s) | 969 |
| BbvI | GCAGC | 1 cut(s) | 996 |
| BccI | CCATC | 3 cut(s) | 259, 638, 848 |
| BceAI | ACGGC | 2 cut(s) | 760, 811 |
| BciT130I | CCWGG | 2 cut(s) | 41, 239 |
| BcnI | CCSGG | 1 cut(s) | 901 |
| BcoDI | GTCTC | 1 cut(s) | 1242 |
| BfaI | CTAG | 2 cut(s) | 47, 954 |
| BfoI | RGCGCY | 1 cut(s) | 216 |
| BfuAI | ACCTGC | 1 cut(s) | 537 |
| BisI | GCNGC | 3 cut(s) | 638, 1010, 1094 |
| BlsI | GCNGC | 3 cut(s) | 639, 1011, 1095 |
| Bme1390I | CCNGG | 3 cut(s) | 41, 239, 901 |
| Bme18I | GGWCC | 1 cut(s) | 1110 |
| BmeT110I | CYCGRG | 1 cut(s) | 804 |
| BmgBI | CACGTC | 1 cut(s) | 1271 |
| BmgT120I | GGNCC | 2 cut(s) | 142, 1110 |
| BmiI | GGNNCC | 8 cut(s) | 249, 629, 747, 819, 892, 951, 1086, 1207 |
| BmrFI | CCNGG | 3 cut(s) | 41, 239, 901 |
| BmsI | GCATC | 4 cut(s) | 298, 731, 955, 1150 |
| Bpu10I | CCTNAGC | 1 cut(s) | 969 |
| BpuEI | CTTGAG | 1 cut(s) | 52 |
| BpuMI | CCSGG | 1 cut(s) | 901 |
| BsaAI | YACGTR | 2 cut(s) | 941, 1027 |
| BsaHI | GRCGYC | 1 cut(s) | 430 |
| BsaJI | CCNNGG | 4 cut(s) | 39, 243, 833, 1088 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 533, 563 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 244, 755, 900 |
| Bse21I | CCTNAGG | 1 cut(s) | 129 |
| Bse3DI | GCAATG | 3 cut(s) | 518, 604, 894 |
| BseBI | CCWGG | 2 cut(s) | 41, 239 |
| BseDI | CCNNGG | 4 cut(s) | 39, 243, 833, 1088 |
| BseGI | GGATG | 2 cut(s) | 289, 469 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 244, 755, 900 |
| BseMI | GCAATG | 3 cut(s) | 518, 604, 894 |
| BseMII | CTCAG | 2 cut(s) | 120, 960 |
| BseRI | GAGGAG | 1 cut(s) | 249 |
| BseXI | GCAGC | 1 cut(s) | 996 |
| BseYI | CCCAGC | 1 cut(s) | 707 |
| BsgI | GTGCAG | 1 cut(s) | 432 |
| Bsh1236I | CGCG | 1 cut(s) | 307 |
| BshFI | GGCC | 4 cut(s) | 143, 242, 1004, 1288 |
| BshNI | GGYRCC | 3 cut(s) | 817, 890, 1205 |
| BsiHKAI | GWGCWC | 2 cut(s) | 793, 961 |
| BsiHKCI | CYCGRG | 1 cut(s) | 804 |
| BsiSI | CCGG | 1 cut(s) | 901 |
| BslFI | GGGAC | 2 cut(s) | 21, 814 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 244, 755, 900 |
| BsmAI | GTCTC | 1 cut(s) | 1242 |
| BsmFI | GGGAC | 2 cut(s) | 21, 814 |
| BsnI | GGCC | 4 cut(s) | 143, 242, 1004, 1288 |
| BsoBI | CYCGRG | 1 cut(s) | 804 |
| Bsp1286I | GDGCHC | 2 cut(s) | 793, 961 |
| Bsp143I | GATC | 3 cut(s) | 181, 714, 874 |
| Bsp19I | CCATGG | 1 cut(s) | 833 |
| BspACI | CCGC | 5 cut(s) | 305, 637, 824, 946, 1093 |
| BspANI | GGCC | 4 cut(s) | 143, 242, 1004, 1288 |
| BspCNI | CTCAG | 2 cut(s) | 121, 961 |
| BspFNI | CGCG | 1 cut(s) | 307 |
| BspHI | TCATGA | 1 cut(s) | 1213 |
| BspLI | GGNNCC | 8 cut(s) | 249, 629, 747, 819, 892, 951, 1086, 1207 |
| BspMI | ACCTGC | 1 cut(s) | 537 |
| BspPI | GGATC | 2 cut(s) | 189, 882 |
| BspT107I | GGYRCC | 3 cut(s) | 817, 890, 1205 |
| BsrDI | GCAATG | 3 cut(s) | 518, 604, 894 |
| BssECI | CCNNGG | 4 cut(s) | 39, 243, 833, 1088 |
| BssMI | GATC | 3 cut(s) | 181, 714, 874 |
| BssNI | GRCGYC | 1 cut(s) | 430 |
| BssT1I | CCWWGG | 3 cut(s) | 243, 833, 1088 |
| Bst2UI | CCWGG | 2 cut(s) | 41, 239 |
| Bst4CI | ACNGT | 3 cut(s) | 632, 914, 1054 |
| Bst6I | CTCTTC | 1 cut(s) | 1285 |
| BstACI | GRCGYC | 1 cut(s) | 430 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 529 |
| BstBAI | YACGTR | 2 cut(s) | 941, 1027 |
| BstC8I | GCNNGC | 2 cut(s) | 883, 1290 |
| BstDEI | CTNAG | 2 cut(s) | 129, 969 |
| BstDSI | CCRYGG | 1 cut(s) | 833 |
| BstF5I | GGATG | 2 cut(s) | 289, 469 |
| BstFNI | CGCG | 1 cut(s) | 307 |
| BstH2I | RGCGCY | 1 cut(s) | 216 |
| BstHHI | GCGC | 1 cut(s) | 215 |
| BstKTI | GATC | 3 cut(s) | 184, 717, 877 |
| BstMAI | GTCTC | 1 cut(s) | 1242 |
| BstMBI | GATC | 3 cut(s) | 181, 714, 874 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 239, 529, 580, 772, 965, 1018 |
| BstNI | CCWGG | 2 cut(s) | 41, 239 |
| BstNSI | RCATGY | 3 cut(s) | 490, 984, 1151 |
| BstSCI | CCNGG | 3 cut(s) | 39, 237, 899 |
| BstSNI | TACGTA | 1 cut(s) | 1027 |
| BstUI | CGCG | 1 cut(s) | 307 |
| BstV1I | GCAGC | 1 cut(s) | 996 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1120 |
| Bsu36I | CCTNAGG | 1 cut(s) | 129 |
| BsuRI | GGCC | 4 cut(s) | 143, 242, 1004, 1288 |
| BtgI | CCRYGG | 1 cut(s) | 833 |
| BtrI | CACGTC | 1 cut(s) | 1271 |
| BtsCI | GGATG | 2 cut(s) | 289, 469 |
| BtsIMutI | CAGTG | 1 cut(s) | 1112 |
| BveI | ACCTGC | 1 cut(s) | 537 |
| Cac8I | GCNNGC | 2 cut(s) | 883, 1290 |
| CciI | TCATGA | 1 cut(s) | 1213 |
| CfoI | GCGC | 1 cut(s) | 215 |
| Cfr13I | GGNCC | 2 cut(s) | 142, 1110 |
| CseI | GACGC | 1 cut(s) | 419 |
| DdeI | CTNAG | 2 cut(s) | 129, 969 |
| DpnI | GATC | 3 cut(s) | 183, 716, 876 |
| DpnII | GATC | 3 cut(s) | 181, 714, 874 |
| DraI | TTTAAA | 1 cut(s) | 696 |
| EaeI | YGGCCR | 1 cut(s) | 1002 |
| Eam1104I | CTCTTC | 1 cut(s) | 1285 |
| EarI | CTCTTC | 1 cut(s) | 1285 |
| EciI | GGCGGA | 1 cut(s) | 813 |
| Eco105I | TACGTA | 1 cut(s) | 1027 |
| Eco130I | CCWWGG | 3 cut(s) | 243, 833, 1088 |
| Eco32I | GATATC | 1 cut(s) | 109 |
| Eco47I | GGWCC | 1 cut(s) | 1110 |
| Eco72I | CACGTG | 1 cut(s) | 941 |
| Eco81I | CCTNAGG | 1 cut(s) | 129 |
| Eco88I | CYCGRG | 1 cut(s) | 804 |
| EcoO109I | RGGNCCY | 1 cut(s) | 142 |
| EcoRI | GAATTC | 1 cut(s) | 345 |
| EcoRII | CCWGG | 2 cut(s) | 39, 237 |
| EcoRV | GATATC | 1 cut(s) | 109 |
| EcoT14I | CCWWGG | 3 cut(s) | 243, 833, 1088 |
| ErhI | CCWWGG | 3 cut(s) | 243, 833, 1088 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 464, 496 |
| FaqI | GGGAC | 2 cut(s) | 21, 814 |
| FauI | CCCGC | 1 cut(s) | 939 |
| Fnu4HI | GCNGC | 3 cut(s) | 638, 1010, 1094 |
| FokI | GGATG | 2 cut(s) | 276, 476 |
| Fsp4HI | GCNGC | 3 cut(s) | 638, 1010, 1094 |
| FspBI | CTAG | 2 cut(s) | 47, 954 |
| GlaI | GCGC | 1 cut(s) | 214 |
| GluI | GCNGC | 3 cut(s) | 638, 1010, 1094 |
| GsaI | CCCAGC | 1 cut(s) | 711 |
| HaeII | RGCGCY | 1 cut(s) | 216 |
| HaeIII | GGCC | 4 cut(s) | 143, 242, 1004, 1288 |
| HapII | CCGG | 1 cut(s) | 901 |
| HgaI | GACGC | 1 cut(s) | 419 |
| HhaI | GCGC | 1 cut(s) | 215 |
| Hin1I | GRCGYC | 1 cut(s) | 430 |
| Hin6I | GCGC | 1 cut(s) | 213 |
| HinP1I | GCGC | 1 cut(s) | 213 |
| HinfI | GANTC | 4 cut(s) | 34, 701, 1043, 1299 |
| HpaII | CCGG | 1 cut(s) | 901 |
| HphI | GGTGA | 1 cut(s) | 1065 |
| Hpy188I | TCNGA | 3 cut(s) | 351, 541, 622 |
| Hpy188III | TCNNGA | 6 cut(s) | 104, 128, 469, 872, 962, 1214 |
| Hpy99I | CGWCG | 1 cut(s) | 1051 |
| HpyAV | CCTTC | 2 cut(s) | 1163, 1215 |
| HpyCH4III | ACNGT | 3 cut(s) | 632, 914, 1054 |
| HpyCH4IV | ACGT | 3 cut(s) | 940, 1026, 1270 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 239, 529, 580, 772, 965, 1018 |
| HpyF3I | CTNAG | 2 cut(s) | 129, 969 |
| HpySE526I | ACGT | 3 cut(s) | 940, 1026, 1270 |
| Hsp92I | GRCGYC | 1 cut(s) | 430 |
| HspAI | GCGC | 1 cut(s) | 213 |
| Kzo9I | GATC | 3 cut(s) | 181, 714, 874 |
| LmnI | GCTCC | 2 cut(s) | 253, 796 |
| Lsp1109I | GCAGC | 1 cut(s) | 996 |
| LweI | GCATC | 4 cut(s) | 298, 731, 955, 1150 |
| MaeI | CTAG | 2 cut(s) | 47, 954 |
| MaeII | ACGT | 3 cut(s) | 940, 1026, 1270 |
| MaeIII | GTNAC | 2 cut(s) | 549, 808 |
| MalI | GATC | 3 cut(s) | 183, 716, 876 |
| MboI | GATC | 3 cut(s) | 181, 714, 874 |
| MboII | GAAGA | 4 cut(s) | 195, 340, 558, 1272 |
| MfeI | CAATTG | 2 cut(s) | 509, 1114 |
| MhlI | GDGCHC | 2 cut(s) | 793, 961 |
| MlsI | TGGCCA | 1 cut(s) | 1004 |
| MluNI | TGGCCA | 1 cut(s) | 1004 |
| MlyI | GAGTC | 2 cut(s) | 43, 710 |
| MmeI | TCCRAC | 1 cut(s) | 441 |
| Mox20I | TGGCCA | 1 cut(s) | 1004 |
| MscI | TGGCCA | 1 cut(s) | 1004 |
| MseI | TTAA | 5 cut(s) | 588, 657, 695, 1058, 1306 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1146 |
| Msp20I | TGGCCA | 1 cut(s) | 1004 |
| MspA1I | CMGCKG | 1 cut(s) | 707 |
| MspI | CCGG | 1 cut(s) | 901 |
| MspR9I | CCNGG | 3 cut(s) | 41, 239, 901 |
| MunI | CAATTG | 2 cut(s) | 509, 1114 |
| MvaI | CCWGG | 2 cut(s) | 41, 239 |
| MvnI | CGCG | 1 cut(s) | 307 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 239, 529, 580, 772, 965, 1018 |
| NciI | CCSGG | 1 cut(s) | 901 |
| NcoI | CCATGG | 1 cut(s) | 833 |
| NdeII | GATC | 3 cut(s) | 181, 714, 874 |
| NlaIV | GGNNCC | 8 cut(s) | 249, 629, 747, 819, 892, 951, 1086, 1207 |
| NmuCI | GTSAC | 1 cut(s) | 549 |
| NspI | RCATGY | 3 cut(s) | 490, 984, 1151 |
| PaeR7I | CTCGAG | 1 cut(s) | 804 |
| PagI | TCATGA | 1 cut(s) | 1213 |
| PciI | ACATGT | 1 cut(s) | 486 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1032, 1046 |
| PfeI | GAWTC | 2 cut(s) | 1043, 1299 |
| PkrI | GCNGC | 3 cut(s) | 639, 1011, 1095 |
| PleI | GAGTC | 2 cut(s) | 42, 709 |
| PmaCI | CACGTG | 1 cut(s) | 941 |
| PmlI | CACGTG | 1 cut(s) | 941 |
| PpsI | GAGTC | 2 cut(s) | 42, 709 |
| Ppu21I | YACGTR | 2 cut(s) | 941, 1027 |
| PscI | ACATGT | 1 cut(s) | 486 |
| Psp6I | CCWGG | 2 cut(s) | 39, 237 |
| PspCI | CACGTG | 1 cut(s) | 941 |
| PspFI | CCCAGC | 1 cut(s) | 707 |
| PspGI | CCWGG | 2 cut(s) | 39, 237 |
| PspN4I | GGNNCC | 8 cut(s) | 249, 629, 747, 819, 892, 951, 1086, 1207 |
| PspPI | GGNCC | 2 cut(s) | 142, 1110 |
| PspXI | VCTCGAGB | 1 cut(s) | 804 |
| PvuII | CAGCTG | 1 cut(s) | 707 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1146 |
| SaqAI | TTAA | 5 cut(s) | 588, 657, 695, 1058, 1306 |
| SatI | GCNGC | 3 cut(s) | 638, 1010, 1094 |
| Sau3AI | GATC | 3 cut(s) | 181, 714, 874 |
| Sau96I | GGNCC | 2 cut(s) | 142, 1110 |
| SchI | GAGTC | 2 cut(s) | 43, 710 |
| ScrFI | CCNGG | 3 cut(s) | 41, 239, 901 |
| SduI | GDGCHC | 2 cut(s) | 793, 961 |
| SfaNI | GCATC | 4 cut(s) | 298, 731, 955, 1150 |
| Sfr274I | CTCGAG | 1 cut(s) | 804 |
| SinI | GGWCC | 1 cut(s) | 1110 |
| SlaI | CTCGAG | 1 cut(s) | 804 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1146 |
| SmlI | CTYRAG | 2 cut(s) | 31, 804 |
| SmoI | CTYRAG | 2 cut(s) | 31, 804 |
| SnaBI | TACGTA | 1 cut(s) | 1027 |
| SsiI | CCGC | 5 cut(s) | 305, 637, 824, 946, 1093 |
| SspI | AATATT | 1 cut(s) | 850 |
| SspMI | CTAG | 2 cut(s) | 47, 954 |
| StyD4I | CCNGG | 3 cut(s) | 39, 237, 899 |
| StyI | CCWWGG | 3 cut(s) | 243, 833, 1088 |
| TaaI | ACNGT | 3 cut(s) | 632, 914, 1054 |
| TaiI | ACGT | 3 cut(s) | 943, 1029, 1273 |
| TaqI | TCGA | 3 cut(s) | 805, 1035, 1046 |
| TauI | GCSGC | 2 cut(s) | 640, 1096 |
| TfiI | GAWTC | 2 cut(s) | 1043, 1299 |
| Tru1I | TTAA | 5 cut(s) | 588, 657, 695, 1058, 1306 |
| Tru9I | TTAA | 5 cut(s) | 588, 657, 695, 1058, 1306 |
| TscAI | CASTG | 1 cut(s) | 1112 |
| TseFI | GTSAC | 1 cut(s) | 549 |
| TseI | GCWGC | 1 cut(s) | 1009 |
| Tsp45I | GTSAC | 1 cut(s) | 549 |
| TspDTI | ATGAA | 4 cut(s) | 67, 74, 326, 661 |
| TspGWI | ACGGA | 3 cut(s) | 252, 1055, 1233 |
| TspRI | CASTG | 1 cut(s) | 1112 |
| VpaK11BI | GGWCC | 1 cut(s) | 1110 |
| XapI | RAATTY | 4 cut(s) | 345, 668, 730, 797 |
| XceI | RCATGY | 3 cut(s) | 490, 984, 1151 |
| XhoI | CTCGAG | 1 cut(s) | 804 |
| XspI | CTAG | 2 cut(s) | 47, 954 |