ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 673 |
| AccI | GTMKAC | 1 cut(s) | 18 |
| AccII | CGCG | 1 cut(s) | 486 |
| AccIII | TCCGGA | 1 cut(s) | 848 |
| AciI | CCGC | 1 cut(s) | 200 |
| AcoI | YGGCCR | 1 cut(s) | 197 |
| AcsI | RAATTY | 4 cut(s) | 501, 602, 681, 804 |
| AcuI | CTGAAG | 2 cut(s) | 449, 555 |
| AfaI | GTAC | 1 cut(s) | 27 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 673 |
| AflII | CTTAAG | 1 cut(s) | 407 |
| AgsI | TTSAA | 5 cut(s) | 149, 347, 497, 506, 551 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 123 |
| AhlI | ACTAGT | 1 cut(s) | 206 |
| AjnI | CCWGG | 1 cut(s) | 564 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 299, 331 |
| AluBI | AGCT | 4 cut(s) | 310, 406, 412, 556 |
| AluI | AGCT | 4 cut(s) | 310, 406, 412, 556 |
| Alw21I | GWGCWC | 2 cut(s) | 484, 694 |
| Alw26I | GTCTC | 1 cut(s) | 894 |
| Alw44I | GTGCAC | 1 cut(s) | 480 |
| Aor13HI | TCCGGA | 1 cut(s) | 848 |
| AoxI | GGCC | 1 cut(s) | 197 |
| ApaLI | GTGCAC | 1 cut(s) | 480 |
| ApeKI | GCWGC | 1 cut(s) | 488 |
| ApoI | RAATTY | 4 cut(s) | 501, 602, 681, 804 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 501, 786 |
| AspLEI | GCGC | 1 cut(s) | 488 |
| AspS9I | GGNCC | 1 cut(s) | 284 |
| AsuHPI | GGTGA | 4 cut(s) | 96, 256, 637, 656 |
| AvaII | GGWCC | 1 cut(s) | 284 |
| BaeGI | GKGCMC | 2 cut(s) | 324, 484 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 21, 54 |
| BauI | CACGAG | 1 cut(s) | 33 |
| BbsI | GAAGAC | 1 cut(s) | 442 |
| Bbv12I | GWGCWC | 2 cut(s) | 484, 694 |
| BbvI | GCAGC | 1 cut(s) | 475 |
| BccI | CCATC | 2 cut(s) | 518, 624 |
| BciT130I | CCWGG | 1 cut(s) | 566 |
| BclI | TGATCA | 2 cut(s) | 238, 757 |
| BcoDI | GTCTC | 1 cut(s) | 894 |
| BcuI | ACTAGT | 1 cut(s) | 206 |
| BfaI | CTAG | 2 cut(s) | 207, 509 |
| BfrI | CTTAAG | 1 cut(s) | 407 |
| BisI | GCNGC | 2 cut(s) | 200, 489 |
| BlsI | GCNGC | 2 cut(s) | 201, 490 |
| Bme1390I | CCNGG | 1 cut(s) | 566 |
| Bme18I | GGWCC | 1 cut(s) | 284 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 123 |
| BmgT120I | GGNCC | 1 cut(s) | 284 |
| BmrFI | CCNGG | 1 cut(s) | 566 |
| BmsI | GCATC | 1 cut(s) | 559 |
| BpiI | GAAGAC | 1 cut(s) | 442 |
| Bsa29I | ATCGAT | 1 cut(s) | 785 |
| BsaAI | YACGTR | 1 cut(s) | 25 |
| BsaBI | GATNNNNATC | 1 cut(s) | 243 |
| BsaJI | CCNNGG | 2 cut(s) | 182, 564 |
| BsaWI | WCCGGW | 1 cut(s) | 848 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 673 |
| Bse1I | ACTGG | 1 cut(s) | 661 |
| Bse3DI | GCAATG | 1 cut(s) | 273 |
| Bse8I | GATNNNNATC | 1 cut(s) | 243 |
| BseAI | TCCGGA | 1 cut(s) | 848 |
| BseBI | CCWGG | 1 cut(s) | 566 |
| BseCI | ATCGAT | 1 cut(s) | 785 |
| BseDI | CCNNGG | 2 cut(s) | 182, 564 |
| BseGI | GGATG | 3 cut(s) | 73, 574, 742 |
| BseJI | GATNNNNATC | 1 cut(s) | 243 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 673 |
| BseMI | GCAATG | 1 cut(s) | 273 |
| BseMII | CTCAG | 2 cut(s) | 339, 813 |
| BseNI | ACTGG | 1 cut(s) | 661 |
| BseRI | GAGGAG | 2 cut(s) | 144, 688 |
| BseSI | GKGCMC | 2 cut(s) | 324, 484 |
| BseXI | GCAGC | 1 cut(s) | 475 |
| Bsh1236I | CGCG | 1 cut(s) | 486 |
| BshFI | GGCC | 1 cut(s) | 199 |
| BshVI | ATCGAT | 1 cut(s) | 785 |
| BsiHKAI | GWGCWC | 2 cut(s) | 484, 694 |
| BsiSI | CCGG | 1 cut(s) | 849 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 673 |
| BsmAI | GTCTC | 1 cut(s) | 894 |
| BsnI | GGCC | 1 cut(s) | 199 |
| Bsp1286I | GDGCHC | 3 cut(s) | 324, 484, 694 |
| Bsp13I | TCCGGA | 1 cut(s) | 848 |
| Bsp143I | GATC | 3 cut(s) | 91, 238, 757 |
| Bsp19I | CCATGG | 1 cut(s) | 182 |
| BspACI | CCGC | 1 cut(s) | 200 |
| BspANI | GGCC | 1 cut(s) | 199 |
| BspCNI | CTCAG | 2 cut(s) | 338, 812 |
| BspDI | ATCGAT | 1 cut(s) | 785 |
| BspEI | TCCGGA | 1 cut(s) | 848 |
| BspFNI | CGCG | 1 cut(s) | 486 |
| BspQI | GCTCTTC | 1 cut(s) | 546 |
| BspTI | CTTAAG | 1 cut(s) | 407 |
| BsrDI | GCAATG | 1 cut(s) | 273 |
| BsrI | ACTGG | 1 cut(s) | 661 |
| BssECI | CCNNGG | 2 cut(s) | 182, 564 |
| BssMI | GATC | 3 cut(s) | 91, 238, 757 |
| BssSI | CACGAG | 1 cut(s) | 33 |
| BssT1I | CCWWGG | 1 cut(s) | 182 |
| Bst2BI | CACGAG | 1 cut(s) | 33 |
| Bst2UI | CCWGG | 1 cut(s) | 566 |
| Bst4CI | ACNGT | 1 cut(s) | 108 |
| Bst6I | CTCTTC | 3 cut(s) | 238, 546, 717 |
| BstAFI | CTTAAG | 1 cut(s) | 407 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 488 |
| BstBAI | YACGTR | 1 cut(s) | 25 |
| BstC8I | GCNNGC | 2 cut(s) | 484, 694 |
| BstDEI | CTNAG | 2 cut(s) | 325, 799 |
| BstDSI | CCRYGG | 1 cut(s) | 182 |
| BstEII | GGTNACC | 1 cut(s) | 102 |
| BstF5I | GGATG | 3 cut(s) | 73, 574, 742 |
| BstFNI | CGCG | 1 cut(s) | 486 |
| BstHHI | GCGC | 1 cut(s) | 488 |
| BstKTI | GATC | 3 cut(s) | 94, 241, 760 |
| BstMAI | GTCTC | 1 cut(s) | 894 |
| BstMBI | GATC | 3 cut(s) | 91, 238, 757 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 403, 488, 569, 617 |
| BstNI | CCWGG | 1 cut(s) | 566 |
| BstPI | GGTNACC | 1 cut(s) | 102 |
| BstSCI | CCNGG | 1 cut(s) | 564 |
| BstSLI | GKGCMC | 2 cut(s) | 324, 484 |
| BstSNI | TACGTA | 1 cut(s) | 25 |
| BstUI | CGCG | 1 cut(s) | 486 |
| BstV1I | GCAGC | 1 cut(s) | 475 |
| BstV2I | GAAGAC | 1 cut(s) | 442 |
| Bsu15I | ATCGAT | 1 cut(s) | 785 |
| BsuRI | GGCC | 1 cut(s) | 199 |
| BsuTUI | ATCGAT | 1 cut(s) | 785 |
| BtgI | CCRYGG | 1 cut(s) | 182 |
| BtsCI | GGATG | 3 cut(s) | 73, 574, 742 |
| Cac8I | GCNNGC | 2 cut(s) | 484, 694 |
| CfoI | GCGC | 1 cut(s) | 488 |
| Cfr13I | GGNCC | 1 cut(s) | 284 |
| ClaI | ATCGAT | 1 cut(s) | 785 |
| CseI | GACGC | 1 cut(s) | 530 |
| Csp6I | GTAC | 1 cut(s) | 26 |
| CviAII | CATG | 3 cut(s) | 114, 183, 354 |
| CviJI | RGCY | 9 cut(s) | 138, 199, 310, 406, 412, 512, 556, 563, 660 |
| CviKI_1 | RGCY | 9 cut(s) | 138, 199, 310, 406, 412, 512, 556, 563, 660 |
| CviQI | GTAC | 1 cut(s) | 26 |
| DdeI | CTNAG | 2 cut(s) | 325, 799 |
| DpnI | GATC | 3 cut(s) | 93, 240, 759 |
| DpnII | GATC | 3 cut(s) | 91, 238, 757 |
| DraI | TTTAAA | 1 cut(s) | 417 |
| DriI | GACNNNNNGTC | 1 cut(s) | 123 |
| EaeI | YGGCCR | 1 cut(s) | 197 |
| Eam1104I | CTCTTC | 3 cut(s) | 238, 546, 717 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 123 |
| EarI | CTCTTC | 3 cut(s) | 238, 546, 717 |
| Eco105I | TACGTA | 1 cut(s) | 25 |
| Eco130I | CCWWGG | 1 cut(s) | 182 |
| Eco47I | GGWCC | 1 cut(s) | 284 |
| Eco57I | CTGAAG | 2 cut(s) | 449, 555 |
| Eco91I | GGTNACC | 1 cut(s) | 102 |
| EcoO65I | GGTNACC | 1 cut(s) | 102 |
| EcoRI | GAATTC | 1 cut(s) | 804 |
| EcoRII | CCWGG | 1 cut(s) | 564 |
| EcoT14I | CCWWGG | 1 cut(s) | 182 |
| ErhI | CCWWGG | 1 cut(s) | 182 |
| FaeI | CATG | 3 cut(s) | 117, 186, 357 |
| FatI | CATG | 3 cut(s) | 113, 182, 353 |
| FauNDI | CATATG | 2 cut(s) | 60, 900 |
| FbaI | TGATCA | 2 cut(s) | 238, 757 |
| FblI | GTMKAC | 1 cut(s) | 18 |
| Fnu4HI | GCNGC | 2 cut(s) | 200, 489 |
| FokI | GGATG | 3 cut(s) | 80, 581, 749 |
| Fsp4HI | GCNGC | 2 cut(s) | 200, 489 |
| FspBI | CTAG | 2 cut(s) | 207, 509 |
| GlaI | GCGC | 1 cut(s) | 487 |
| GluI | GCNGC | 2 cut(s) | 200, 489 |
| HaeIII | GGCC | 1 cut(s) | 199 |
| HapII | CCGG | 1 cut(s) | 849 |
| HgaI | GACGC | 1 cut(s) | 530 |
| HhaI | GCGC | 1 cut(s) | 488 |
| Hin1II | CATG | 3 cut(s) | 117, 186, 357 |
| Hin6I | GCGC | 1 cut(s) | 486 |
| HinP1I | GCGC | 1 cut(s) | 486 |
| HindIII | AAGCTT | 3 cut(s) | 308, 404, 410 |
| HinfI | GANTC | 7 cut(s) | 782, 787, 838, 852, 863, 895, 908 |
| HpaII | CCGG | 1 cut(s) | 849 |
| HphI | GGTGA | 4 cut(s) | 96, 256, 637, 656 |
| Hpy166II | GTNNAC | 4 cut(s) | 19, 111, 482, 531 |
| Hpy188I | TCNGA | 7 cut(s) | 238, 306, 328, 429, 687, 894, 913 |
| Hpy188III | TCNNGA | 7 cut(s) | 253, 521, 596, 779, 791, 801, 849 |
| Hpy8I | GTNNAC | 4 cut(s) | 19, 111, 482, 531 |
| Hpy99I | CGWCG | 1 cut(s) | 546 |
| HpyAV | CCTTC | 5 cut(s) | 424, 610, 635, 810, 898 |
| HpyCH4III | ACNGT | 1 cut(s) | 108 |
| HpyCH4IV | ACGT | 1 cut(s) | 24 |
| HpyCH4V | TGCA | 3 cut(s) | 278, 397, 482 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 403, 488, 569, 617 |
| HpyF3I | CTNAG | 2 cut(s) | 325, 799 |
| HpySE526I | ACGT | 1 cut(s) | 24 |
| Hsp92II | CATG | 3 cut(s) | 117, 186, 357 |
| HspAI | GCGC | 1 cut(s) | 486 |
| Kpn2I | TCCGGA | 1 cut(s) | 848 |
| Ksp22I | TGATCA | 2 cut(s) | 238, 757 |
| Kzo9I | GATC | 3 cut(s) | 91, 238, 757 |
| LguI | GCTCTTC | 1 cut(s) | 546 |
| LmnI | GCTCC | 1 cut(s) | 701 |
| Lsp1109I | GCAGC | 1 cut(s) | 475 |
| LweI | GCATC | 1 cut(s) | 559 |
| MaeI | CTAG | 2 cut(s) | 207, 509 |
| MaeII | ACGT | 1 cut(s) | 24 |
| MaeIII | GTNAC | 3 cut(s) | 44, 102, 644 |
| MalI | GATC | 3 cut(s) | 93, 240, 759 |
| MboI | GATC | 3 cut(s) | 91, 238, 757 |
| MboII | GAAGA | 5 cut(s) | 225, 442, 563, 704, 863 |
| MhlI | GDGCHC | 3 cut(s) | 324, 484, 694 |
| MluCI | AATT | 8 cut(s) | 87, 268, 288, 339, 501, 602, 681, 804 |
| MmeI | TCCRAC | 1 cut(s) | 138 |
| MnlI | CCTC | 5 cut(s) | 122, 258, 709, 780, 856 |
| MroI | TCCGGA | 1 cut(s) | 848 |
| MroXI | GAANNNNTTC | 2 cut(s) | 501, 786 |
| MseI | TTAA | 6 cut(s) | 96, 336, 408, 416, 444, 744 |
| MspA1I | CMGCKG | 1 cut(s) | 202 |
| MspCI | CTTAAG | 1 cut(s) | 407 |
| MspI | CCGG | 1 cut(s) | 849 |
| MspR9I | CCNGG | 1 cut(s) | 566 |
| MvaI | CCWGG | 1 cut(s) | 566 |
| MvnI | CGCG | 1 cut(s) | 486 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 403, 488, 569, 617 |
| NcoI | CCATGG | 1 cut(s) | 182 |
| NdeI | CATATG | 2 cut(s) | 60, 900 |
| NdeII | GATC | 3 cut(s) | 91, 238, 757 |
| NlaIII | CATG | 3 cut(s) | 117, 186, 357 |
| NmuCI | GTSAC | 3 cut(s) | 44, 102, 644 |
| PciSI | GCTCTTC | 1 cut(s) | 546 |
| PdmI | GAANNNNTTC | 2 cut(s) | 501, 786 |
| PfeI | GAWTC | 7 cut(s) | 782, 787, 838, 852, 863, 895, 908 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 673 |
| PkrI | GCNGC | 2 cut(s) | 201, 490 |
| Ppu21I | YACGTR | 1 cut(s) | 25 |
| Psp6I | CCWGG | 1 cut(s) | 564 |
| PspEI | GGTNACC | 1 cut(s) | 102 |
| PspGI | CCWGG | 1 cut(s) | 564 |
| PspPI | GGNCC | 1 cut(s) | 284 |
| RsaI | GTAC | 1 cut(s) | 27 |
| RsaNI | GTAC | 1 cut(s) | 26 |
| SapI | GCTCTTC | 1 cut(s) | 546 |
| SaqAI | TTAA | 6 cut(s) | 96, 336, 408, 416, 444, 744 |
| SatI | GCNGC | 2 cut(s) | 200, 489 |
| Sau3AI | GATC | 3 cut(s) | 91, 238, 757 |
| Sau96I | GGNCC | 1 cut(s) | 284 |
| ScrFI | CCNGG | 1 cut(s) | 566 |
| SduI | GDGCHC | 3 cut(s) | 324, 484, 694 |
| SfaNI | GCATC | 1 cut(s) | 559 |
| SinI | GGWCC | 1 cut(s) | 284 |
| SmlI | CTYRAG | 1 cut(s) | 407 |
| SmoI | CTYRAG | 1 cut(s) | 407 |
| SnaBI | TACGTA | 1 cut(s) | 25 |
| SpeI | ACTAGT | 1 cut(s) | 206 |
| Sse9I | AATT | 8 cut(s) | 87, 268, 288, 339, 501, 602, 681, 804 |
| SsiI | CCGC | 1 cut(s) | 200 |
| SspI | AATATT | 1 cut(s) | 748 |
| SspMI | CTAG | 2 cut(s) | 207, 509 |
| StyD4I | CCNGG | 1 cut(s) | 564 |
| StyI | CCWWGG | 1 cut(s) | 182 |
| TaaI | ACNGT | 1 cut(s) | 108 |
| TaiI | ACGT | 1 cut(s) | 27 |
| TaqI | TCGA | 3 cut(s) | 127, 785, 808 |
| TasI | AATT | 8 cut(s) | 87, 268, 288, 339, 501, 602, 681, 804 |
| TauI | GCSGC | 1 cut(s) | 202 |
| TfiI | GAWTC | 7 cut(s) | 782, 787, 838, 852, 863, 895, 908 |
| Tru1I | TTAA | 6 cut(s) | 96, 336, 408, 416, 444, 744 |
| Tru9I | TTAA | 6 cut(s) | 96, 336, 408, 416, 444, 744 |
| TseFI | GTSAC | 3 cut(s) | 44, 102, 644 |
| TseI | GCWGC | 1 cut(s) | 488 |
| Tsp45I | GTSAC | 3 cut(s) | 44, 102, 644 |
| TspDTI | ATGAA | 5 cut(s) | 17, 249, 452, 887, 917 |
| TspGWI | ACGGA | 1 cut(s) | 287 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 673 |
| Vha464I | CTTAAG | 1 cut(s) | 407 |
| VneI | GTGCAC | 1 cut(s) | 480 |
| VpaK11BI | GGWCC | 1 cut(s) | 284 |
| XapI | RAATTY | 4 cut(s) | 501, 602, 681, 804 |
| XmiI | GTMKAC | 1 cut(s) | 18 |
| XmnI | GAANNNNTTC | 2 cut(s) | 501, 786 |
| XspI | CTAG | 2 cut(s) | 207, 509 |