ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 823 |
| AciI | CCGC | 1 cut(s) | 180 |
| AclWI | GGATC | 2 cut(s) | 209, 222 |
| AcoI | YGGCCR | 1 cut(s) | 927 |
| AcsI | RAATTY | 1 cut(s) | 119 |
| AcuI | CTGAAG | 2 cut(s) | 939, 1031 |
| AcyI | GRCGYC | 1 cut(s) | 1042 |
| AfaI | GTAC | 1 cut(s) | 71 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 193 |
| AgsI | TTSAA | 5 cut(s) | 347, 394, 805, 829, 947 |
| AjiI | CACGTC | 1 cut(s) | 252 |
| AjnI | CCWGG | 4 cut(s) | 298, 350, 518, 659 |
| AluBI | AGCT | 6 cut(s) | 266, 293, 325, 360, 757, 1030 |
| AluI | AGCT | 6 cut(s) | 266, 293, 325, 360, 757, 1030 |
| Alw21I | GWGCWC | 3 cut(s) | 570, 793, 1008 |
| Alw44I | GTGCAC | 1 cut(s) | 566 |
| AlwI | GGATC | 2 cut(s) | 209, 222 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 293 |
| AoxI | GGCC | 6 cut(s) | 177, 516, 545, 927, 939, 1051 |
| ApaLI | GTGCAC | 1 cut(s) | 566 |
| ApeKI | GCWGC | 4 cut(s) | 145, 293, 365, 884 |
| ApoI | RAATTY | 1 cut(s) | 119 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 408, 471 |
| AspLEI | GCGC | 1 cut(s) | 825 |
| AspS9I | GGNCC | 2 cut(s) | 516, 1051 |
| AsuHPI | GGTGA | 2 cut(s) | 20, 26 |
| BaeGI | GKGCMC | 1 cut(s) | 570 |
| BamHI | GGATCC | 1 cut(s) | 214 |
| BbsI | GAAGAC | 1 cut(s) | 1037 |
| Bbv12I | GWGCWC | 3 cut(s) | 570, 793, 1008 |
| BbvI | GCAGC | 4 cut(s) | 132, 280, 352, 896 |
| BccI | CCATC | 1 cut(s) | 5 |
| BceAI | ACGGC | 1 cut(s) | 914 |
| BciT130I | CCWGG | 4 cut(s) | 300, 352, 520, 661 |
| BfaI | CTAG | 3 cut(s) | 903, 983, 1001 |
| BisI | GCNGC | 5 cut(s) | 146, 180, 294, 366, 885 |
| BlsI | GCNGC | 5 cut(s) | 147, 181, 295, 367, 886 |
| Bme1390I | CCNGG | 4 cut(s) | 300, 352, 520, 661 |
| BmgBI | CACGTC | 1 cut(s) | 252 |
| BmgT120I | GGNCC | 2 cut(s) | 516, 1051 |
| BmiI | GGNNCC | 2 cut(s) | 216, 900 |
| BmrFI | CCNGG | 4 cut(s) | 300, 352, 520, 661 |
| BmsI | GCATC | 7 cut(s) | 132, 265, 436, 620, 651, 730, 904 |
| BpiI | GAAGAC | 1 cut(s) | 1037 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 414, 446 |
| BpmI | CTGGAG | 2 cut(s) | 98, 282 |
| BsaBI | GATNNNNATC | 1 cut(s) | 405 |
| BsaHI | GRCGYC | 1 cut(s) | 1042 |
| BsaJI | CCNNGG | 5 cut(s) | 270, 350, 519, 582, 1037 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 193 |
| Bse118I | RCCGGY | 1 cut(s) | 852 |
| Bse3DI | GCAATG | 2 cut(s) | 218, 840 |
| Bse8I | GATNNNNATC | 1 cut(s) | 405 |
| BseBI | CCWGG | 4 cut(s) | 300, 352, 520, 661 |
| BseDI | CCNNGG | 5 cut(s) | 270, 350, 519, 582, 1037 |
| BseGI | GGATG | 6 cut(s) | 147, 280, 540, 611, 919, 1032 |
| BseJI | GATNNNNATC | 1 cut(s) | 405 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 193 |
| BseMI | GCAATG | 2 cut(s) | 218, 840 |
| BseMII | CTCAG | 2 cut(s) | 699, 767 |
| BseRI | GAGGAG | 1 cut(s) | 424 |
| BseSI | GKGCMC | 1 cut(s) | 570 |
| BseXI | GCAGC | 4 cut(s) | 132, 280, 352, 896 |
| BseYI | CCCAGC | 2 cut(s) | 607, 811 |
| Bsh1236I | CGCG | 1 cut(s) | 823 |
| BshFI | GGCC | 6 cut(s) | 179, 518, 547, 929, 941, 1053 |
| BsiHKAI | GWGCWC | 3 cut(s) | 570, 793, 1008 |
| BsiSI | CCGG | 2 cut(s) | 544, 853 |
| BslFI | GGGAC | 2 cut(s) | 209, 1006 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 193 |
| BsmFI | GGGAC | 2 cut(s) | 209, 1006 |
| BsnI | GGCC | 6 cut(s) | 179, 518, 547, 929, 941, 1053 |
| Bsp1286I | GDGCHC | 3 cut(s) | 570, 793, 1008 |
| Bsp1407I | TGTACA | 1 cut(s) | 69 |
| Bsp143I | GATC | 1 cut(s) | 214 |
| Bsp19I | CCATGG | 1 cut(s) | 582 |
| BspACI | CCGC | 1 cut(s) | 180 |
| BspANI | GGCC | 6 cut(s) | 179, 518, 547, 929, 941, 1053 |
| BspCNI | CTCAG | 2 cut(s) | 700, 766 |
| BspFNI | CGCG | 1 cut(s) | 823 |
| BspHI | TCATGA | 1 cut(s) | 103 |
| BspLI | GGNNCC | 2 cut(s) | 216, 900 |
| BspPI | GGATC | 2 cut(s) | 209, 222 |
| BsrDI | GCAATG | 2 cut(s) | 218, 840 |
| BsrFI | RCCGGY | 1 cut(s) | 852 |
| BsrGI | TGTACA | 1 cut(s) | 69 |
| BssAI | RCCGGY | 1 cut(s) | 852 |
| BssECI | CCNNGG | 5 cut(s) | 270, 350, 519, 582, 1037 |
| BssMI | GATC | 1 cut(s) | 214 |
| BssNI | GRCGYC | 1 cut(s) | 1042 |
| BssT1I | CCWWGG | 2 cut(s) | 270, 582 |
| Bst2UI | CCWGG | 4 cut(s) | 300, 352, 520, 661 |
| Bst4CI | ACNGT | 3 cut(s) | 202, 232, 441 |
| BstACI | GRCGYC | 1 cut(s) | 1042 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 690 |
| BstAUI | TGTACA | 1 cut(s) | 69 |
| BstC8I | GCNNGC | 3 cut(s) | 323, 375, 549 |
| BstDEI | CTNAG | 2 cut(s) | 708, 753 |
| BstDSI | CCRYGG | 2 cut(s) | 582, 1037 |
| BstF5I | GGATG | 6 cut(s) | 147, 280, 540, 611, 919, 1032 |
| BstFNI | CGCG | 1 cut(s) | 823 |
| BstHHI | GCGC | 1 cut(s) | 825 |
| BstKTI | GATC | 1 cut(s) | 217 |
| BstMBI | GATC | 1 cut(s) | 214 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 374, 690, 884, 914 |
| BstNI | CCWGG | 4 cut(s) | 300, 352, 520, 661 |
| BstSCI | CCNGG | 4 cut(s) | 298, 350, 518, 659 |
| BstSLI | GKGCMC | 1 cut(s) | 570 |
| BstUI | CGCG | 1 cut(s) | 823 |
| BstV1I | GCAGC | 4 cut(s) | 132, 280, 352, 896 |
| BstV2I | GAAGAC | 1 cut(s) | 1037 |
| BstX2I | RGATCY | 1 cut(s) | 214 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 949 |
| BstYI | RGATCY | 1 cut(s) | 214 |
| BsuRI | GGCC | 6 cut(s) | 179, 518, 547, 929, 941, 1053 |
| BtgI | CCRYGG | 2 cut(s) | 582, 1037 |
| BtgZI | GCGATG | 1 cut(s) | 707 |
| BtrI | CACGTC | 1 cut(s) | 252 |
| BtsCI | GGATG | 6 cut(s) | 147, 280, 540, 611, 919, 1032 |
| BtsIMutI | CAGTG | 3 cut(s) | 198, 237, 446 |
| Cac8I | GCNNGC | 3 cut(s) | 323, 375, 549 |
| CaiI | CAGNNNCTG | 1 cut(s) | 293 |
| CciI | TCATGA | 1 cut(s) | 103 |
| CfoI | GCGC | 1 cut(s) | 825 |
| Cfr10I | RCCGGY | 1 cut(s) | 852 |
| Cfr13I | GGNCC | 2 cut(s) | 516, 1051 |
| CseI | GACGC | 1 cut(s) | 1031 |
| Csp6I | GTAC | 1 cut(s) | 70 |
| CviAII | CATG | 6 cut(s) | 104, 304, 383, 506, 583, 835 |
| CviQI | GTAC | 1 cut(s) | 70 |
| DdeI | CTNAG | 2 cut(s) | 708, 753 |
| DpnI | GATC | 1 cut(s) | 216 |
| DpnII | GATC | 1 cut(s) | 214 |
| EaeI | YGGCCR | 1 cut(s) | 927 |
| Eco130I | CCWWGG | 2 cut(s) | 270, 582 |
| Eco57I | CTGAAG | 2 cut(s) | 939, 1031 |
| EcoRII | CCWGG | 4 cut(s) | 298, 350, 518, 659 |
| EcoT14I | CCWWGG | 2 cut(s) | 270, 582 |
| ErhI | CCWWGG | 2 cut(s) | 270, 582 |
| FaeI | CATG | 6 cut(s) | 107, 307, 386, 509, 586, 838 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 710, 742 |
| FaqI | GGGAC | 2 cut(s) | 209, 1006 |
| FatI | CATG | 6 cut(s) | 103, 303, 382, 505, 582, 834 |
| Fnu4HI | GCNGC | 5 cut(s) | 146, 180, 294, 366, 885 |
| FokI | GGATG | 6 cut(s) | 154, 287, 527, 598, 926, 1019 |
| Fsp4HI | GCNGC | 5 cut(s) | 146, 180, 294, 366, 885 |
| FspBI | CTAG | 3 cut(s) | 903, 983, 1001 |
| GlaI | GCGC | 1 cut(s) | 824 |
| GluI | GCNGC | 5 cut(s) | 146, 180, 294, 366, 885 |
| GsaI | CCCAGC | 2 cut(s) | 611, 815 |
| GsuI | CTGGAG | 2 cut(s) | 98, 282 |
| HaeIII | GGCC | 6 cut(s) | 179, 518, 547, 929, 941, 1053 |
| HapII | CCGG | 2 cut(s) | 544, 853 |
| HgaI | GACGC | 1 cut(s) | 1031 |
| HhaI | GCGC | 1 cut(s) | 825 |
| Hin1I | GRCGYC | 1 cut(s) | 1042 |
| Hin1II | CATG | 6 cut(s) | 107, 307, 386, 509, 586, 838 |
| Hin6I | GCGC | 1 cut(s) | 823 |
| HinP1I | GCGC | 1 cut(s) | 823 |
| HincII | GTYRAC | 1 cut(s) | 750 |
| HindII | GTYRAC | 1 cut(s) | 750 |
| HindIII | AAGCTT | 2 cut(s) | 323, 358 |
| HinfI | GANTC | 6 cut(s) | 80, 390, 467, 746, 970, 992 |
| HpaII | CCGG | 2 cut(s) | 544, 853 |
| HphI | GGTGA | 2 cut(s) | 20, 26 |
| Hpy166II | GTNNAC | 3 cut(s) | 568, 750, 1070 |
| Hpy188I | TCNGA | 2 cut(s) | 466, 784 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 104, 173, 194, 394 |
| Hpy8I | GTNNAC | 3 cut(s) | 568, 750, 1070 |
| Hpy99I | CGWCG | 1 cut(s) | 966 |
| HpyAV | CCTTC | 2 cut(s) | 584, 786 |
| HpyCH4III | ACNGT | 3 cut(s) | 202, 232, 441 |
| HpyCH4IV | ACGT | 1 cut(s) | 251 |
| HpyCH4V | TGCA | 7 cut(s) | 427, 505, 551, 568, 642, 693, 884 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 374, 690, 884, 914 |
| HpyF3I | CTNAG | 2 cut(s) | 708, 753 |
| HpySE526I | ACGT | 1 cut(s) | 251 |
| Hsp92I | GRCGYC | 1 cut(s) | 1042 |
| Hsp92II | CATG | 6 cut(s) | 107, 307, 386, 509, 586, 838 |
| HspAI | GCGC | 1 cut(s) | 823 |
| Kzo9I | GATC | 1 cut(s) | 214 |
| LmnI | GCTCC | 1 cut(s) | 301 |
| Lsp1109I | GCAGC | 4 cut(s) | 132, 280, 352, 896 |
| LweI | GCATC | 7 cut(s) | 132, 265, 436, 620, 651, 730, 904 |
| MaeI | CTAG | 3 cut(s) | 903, 983, 1001 |
| MaeII | ACGT | 1 cut(s) | 251 |
| MaeIII | GTNAC | 1 cut(s) | 855 |
| MalI | GATC | 1 cut(s) | 216 |
| MboI | GATC | 1 cut(s) | 214 |
| MboII | GAAGA | 4 cut(s) | 92, 399, 401, 1037 |
| MfeI | CAATTG | 1 cut(s) | 1063 |
| MflI | RGATCY | 1 cut(s) | 214 |
| MhlI | GDGCHC | 3 cut(s) | 570, 793, 1008 |
| MlyI | GAGTC | 3 cut(s) | 89, 755, 964 |
| MmeI | TCCRAC | 1 cut(s) | 947 |
| MnlI | CCTC | 3 cut(s) | 169, 445, 931 |
| MroXI | GAANNNNTTC | 2 cut(s) | 408, 471 |
| MseI | TTAA | 8 cut(s) | 537, 620, 647, 717, 734, 765, 848, 1017 |
| MslI | CAYNNNNRTG | 1 cut(s) | 947 |
| MspA1I | CMGCKG | 1 cut(s) | 182 |
| MspI | CCGG | 2 cut(s) | 544, 853 |
| MspR9I | CCNGG | 4 cut(s) | 300, 352, 520, 661 |
| MunI | CAATTG | 1 cut(s) | 1063 |
| MvaI | CCWGG | 4 cut(s) | 300, 352, 520, 661 |
| MvnI | CGCG | 1 cut(s) | 823 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 374, 690, 884, 914 |
| NcoI | CCATGG | 1 cut(s) | 582 |
| NdeII | GATC | 1 cut(s) | 214 |
| NlaIII | CATG | 6 cut(s) | 107, 307, 386, 509, 586, 838 |
| NlaIV | GGNNCC | 2 cut(s) | 216, 900 |
| PagI | TCATGA | 1 cut(s) | 103 |
| PdmI | GAANNNNTTC | 2 cut(s) | 408, 471 |
| PfeI | GAWTC | 3 cut(s) | 390, 467, 992 |
| PflFI | GACNNNGTC | 1 cut(s) | 200 |
| PkrI | GCNGC | 5 cut(s) | 147, 181, 295, 367, 886 |
| PleI | GAGTC | 3 cut(s) | 88, 754, 964 |
| PpsI | GAGTC | 3 cut(s) | 88, 754, 964 |
| Psp6I | CCWGG | 4 cut(s) | 298, 350, 518, 659 |
| PspFI | CCCAGC | 2 cut(s) | 607, 811 |
| PspGI | CCWGG | 4 cut(s) | 298, 350, 518, 659 |
| PspN4I | GGNNCC | 2 cut(s) | 216, 900 |
| PspPI | GGNCC | 2 cut(s) | 516, 1051 |
| PstNI | CAGNNNCTG | 1 cut(s) | 293 |
| PsuI | RGATCY | 1 cut(s) | 214 |
| PsyI | GACNNNGTC | 1 cut(s) | 200 |
| RsaI | GTAC | 1 cut(s) | 71 |
| RsaNI | GTAC | 1 cut(s) | 70 |
| RseI | CAYNNNNRTG | 1 cut(s) | 947 |
| SaqAI | TTAA | 8 cut(s) | 537, 620, 647, 717, 734, 765, 848, 1017 |
| SatI | GCNGC | 5 cut(s) | 146, 180, 294, 366, 885 |
| Sau3AI | GATC | 1 cut(s) | 214 |
| Sau96I | GGNCC | 2 cut(s) | 516, 1051 |
| SchI | GAGTC | 3 cut(s) | 89, 755, 964 |
| ScrFI | CCNGG | 4 cut(s) | 300, 352, 520, 661 |
| SduI | GDGCHC | 3 cut(s) | 570, 793, 1008 |
| SfaNI | GCATC | 7 cut(s) | 132, 265, 436, 620, 651, 730, 904 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 947 |
| SsiI | CCGC | 1 cut(s) | 180 |
| SspMI | CTAG | 3 cut(s) | 903, 983, 1001 |
| StyD4I | CCNGG | 4 cut(s) | 298, 350, 518, 659 |
| StyI | CCWWGG | 2 cut(s) | 270, 582 |
| TaaI | ACNGT | 3 cut(s) | 202, 232, 441 |
| TaiI | ACGT | 1 cut(s) | 254 |
| TaqI | TCGA | 1 cut(s) | 83 |
| TatI | WGTACW | 1 cut(s) | 69 |
| TauI | GCSGC | 1 cut(s) | 182 |
| TfiI | GAWTC | 3 cut(s) | 390, 467, 992 |
| Tru1I | TTAA | 8 cut(s) | 537, 620, 647, 717, 734, 765, 848, 1017 |
| Tru9I | TTAA | 8 cut(s) | 537, 620, 647, 717, 734, 765, 848, 1017 |
| TscAI | CASTG | 3 cut(s) | 205, 237, 446 |
| TseI | GCWGC | 4 cut(s) | 145, 293, 365, 884 |
| TspDTI | ATGAA | 9 cut(s) | 92, 112, 371, 401, 417, 435, 464, 681, 768 |
| TspRI | CASTG | 3 cut(s) | 205, 237, 446 |
| Tth111I | GACNNNGTC | 1 cut(s) | 200 |
| VneI | GTGCAC | 1 cut(s) | 566 |
| XapI | RAATTY | 1 cut(s) | 119 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 358 |
| XmnI | GAANNNNTTC | 2 cut(s) | 408, 471 |
| XspI | CTAG | 3 cut(s) | 903, 983, 1001 |