ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 12 - 95 | 2.9e-12 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 231 |
| AciI | CCGC | 3 cut(s) | 50, 62, 229 |
| AcsI | RAATTY | 2 cut(s) | 30, 280 |
| AgsI | TTSAA | 3 cut(s) | 29, 80, 188 |
| AluBI | AGCT | 2 cut(s) | 39, 303 |
| AluI | AGCT | 2 cut(s) | 39, 303 |
| Alw26I | GTCTC | 2 cut(s) | 90, 348 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 47 |
| AoxI | GGCC | 1 cut(s) | 72 |
| ApeKI | GCWGC | 1 cut(s) | 47 |
| ApoI | RAATTY | 2 cut(s) | 30, 280 |
| AspLEI | GCGC | 1 cut(s) | 195 |
| BbsI | GAAGAC | 1 cut(s) | 359 |
| BbvI | GCAGC | 1 cut(s) | 34 |
| BccI | CCATC | 1 cut(s) | 52 |
| BcoDI | GTCTC | 2 cut(s) | 90, 348 |
| BisI | GCNGC | 1 cut(s) | 48 |
| BlpI | GCTNAGC | 1 cut(s) | 179 |
| BlsI | GCNGC | 1 cut(s) | 49 |
| BmsI | GCATC | 2 cut(s) | 165, 259 |
| BpiI | GAAGAC | 1 cut(s) | 359 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 179 |
| BsaI | GGTCTC | 1 cut(s) | 348 |
| BsaJI | CCNNGG | 1 cut(s) | 170 |
| Bse1I | ACTGG | 1 cut(s) | 104 |
| BseDI | CCNNGG | 1 cut(s) | 170 |
| BseGI | GGATG | 2 cut(s) | 135, 180 |
| BseMII | CTCAG | 1 cut(s) | 54 |
| BseNI | ACTGG | 1 cut(s) | 104 |
| BseXI | GCAGC | 1 cut(s) | 34 |
| BshFI | GGCC | 1 cut(s) | 74 |
| BslFI | GGGAC | 1 cut(s) | 329 |
| BsmAI | GTCTC | 2 cut(s) | 90, 348 |
| BsmFI | GGGAC | 1 cut(s) | 329 |
| BsnI | GGCC | 1 cut(s) | 74 |
| Bso31I | GGTCTC | 1 cut(s) | 348 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 179 |
| BspACI | CCGC | 3 cut(s) | 50, 62, 229 |
| BspANI | GGCC | 1 cut(s) | 74 |
| BspCNI | CTCAG | 1 cut(s) | 53 |
| BspTNI | GGTCTC | 1 cut(s) | 348 |
| BsrBI | CCGCTC | 1 cut(s) | 231 |
| BsrI | ACTGG | 1 cut(s) | 104 |
| BssECI | CCNNGG | 1 cut(s) | 170 |
| BssT1I | CCWWGG | 1 cut(s) | 170 |
| BstDEI | CTNAG | 2 cut(s) | 40, 179 |
| BstF5I | GGATG | 2 cut(s) | 135, 180 |
| BstHHI | GCGC | 1 cut(s) | 195 |
| BstMAI | GTCTC | 2 cut(s) | 90, 348 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 17 |
| BstV1I | GCAGC | 1 cut(s) | 34 |
| BstV2I | GAAGAC | 1 cut(s) | 359 |
| BsuRI | GGCC | 1 cut(s) | 74 |
| BtsCI | GGATG | 2 cut(s) | 135, 180 |
| CaiI | CAGNNNCTG | 1 cut(s) | 47 |
| CfoI | GCGC | 1 cut(s) | 195 |
| CviJI | RGCY | 3 cut(s) | 39, 74, 303 |
| CviKI_1 | RGCY | 3 cut(s) | 39, 74, 303 |
| DdeI | CTNAG | 2 cut(s) | 40, 179 |
| Eco130I | CCWWGG | 1 cut(s) | 170 |
| Eco31I | GGTCTC | 1 cut(s) | 348 |
| EcoT14I | CCWWGG | 1 cut(s) | 170 |
| EcoT22I | ATGCAT | 1 cut(s) | 274 |
| ErhI | CCWWGG | 1 cut(s) | 170 |
| FaiI | YATR | 5 cut(s) | 36, 108, 242, 290, 335 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 292, 324 |
| FaqI | GGGAC | 1 cut(s) | 329 |
| Fnu4HI | GCNGC | 1 cut(s) | 48 |
| FokI | GGATG | 2 cut(s) | 122, 187 |
| Fsp4HI | GCNGC | 1 cut(s) | 48 |
| GlaI | GCGC | 1 cut(s) | 194 |
| GluI | GCNGC | 1 cut(s) | 48 |
| HaeIII | GGCC | 1 cut(s) | 74 |
| HhaI | GCGC | 1 cut(s) | 195 |
| Hin6I | GCGC | 1 cut(s) | 193 |
| HinP1I | GCGC | 1 cut(s) | 193 |
| HindIII | AAGCTT | 1 cut(s) | 301 |
| HinfI | GANTC | 3 cut(s) | 125, 154, 317 |
| Hpy188I | TCNGA | 2 cut(s) | 153, 372 |
| Hpy188III | TCNNGA | 2 cut(s) | 26, 248 |
| HpyAV | CCTTC | 1 cut(s) | 245 |
| HpyCH4V | TGCA | 2 cut(s) | 272, 341 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 17 |
| HpyF3I | CTNAG | 2 cut(s) | 40, 179 |
| HspAI | GCGC | 1 cut(s) | 193 |
| LmnI | GCTCC | 1 cut(s) | 328 |
| LpnPI | CCDG | 1 cut(s) | 85 |
| Lsp1109I | GCAGC | 1 cut(s) | 34 |
| LweI | GCATC | 2 cut(s) | 165, 259 |
| MaeIII | GTNAC | 1 cut(s) | 347 |
| MbiI | CCGCTC | 1 cut(s) | 231 |
| MboII | GAAGA | 2 cut(s) | 140, 359 |
| MfeI | CAATTG | 1 cut(s) | 196 |
| MluCI | AATT | 3 cut(s) | 30, 196, 280 |
| MlyI | GAGTC | 2 cut(s) | 163, 311 |
| MmeI | TCCRAC | 1 cut(s) | 96 |
| MnlI | CCTC | 2 cut(s) | 139, 168 |
| Mph1103I | ATGCAT | 1 cut(s) | 274 |
| MunI | CAATTG | 1 cut(s) | 196 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 17 |
| NsiI | ATGCAT | 1 cut(s) | 274 |
| PfeI | GAWTC | 1 cut(s) | 125 |
| PkrI | GCNGC | 1 cut(s) | 49 |
| PleI | GAGTC | 2 cut(s) | 162, 311 |
| PpsI | GAGTC | 2 cut(s) | 162, 311 |
| PstNI | CAGNNNCTG | 1 cut(s) | 47 |
| SatI | GCNGC | 1 cut(s) | 48 |
| SchI | GAGTC | 2 cut(s) | 163, 311 |
| SetI | ASST | 4 cut(s) | 41, 256, 305, 367 |
| SfaNI | GCATC | 2 cut(s) | 165, 259 |
| Sse9I | AATT | 3 cut(s) | 30, 196, 280 |
| SsiI | CCGC | 3 cut(s) | 50, 62, 229 |
| StyI | CCWWGG | 1 cut(s) | 170 |
| TaqI | TCGA | 1 cut(s) | 247 |
| TasI | AATT | 3 cut(s) | 30, 196, 280 |
| TfiI | GAWTC | 1 cut(s) | 125 |
| TseI | GCWGC | 1 cut(s) | 47 |
| TspDTI | ATGAA | 2 cut(s) | 23, 236 |
| XapI | RAATTY | 2 cut(s) | 30, 280 |
| Zsp2I | ATGCAT | 1 cut(s) | 274 |