ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Glyco_transf_N | PF26168 | 9 - 246 | 1.5e-11 | Glycosyltransferase, N-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 570 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 720 |
| AciI | CCGC | 2 cut(s) | 352, 798 |
| AclWI | GGATC | 1 cut(s) | 841 |
| AcvI | CACGTG | 1 cut(s) | 402 |
| AfaI | GTAC | 2 cut(s) | 677, 701 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 43, 720 |
| AflII | CTTAAG | 1 cut(s) | 326 |
| AflIII | ACRYGT | 2 cut(s) | 399, 401 |
| AgsI | TTSAA | 5 cut(s) | 317, 550, 659, 668, 758 |
| AluBI | AGCT | 6 cut(s) | 275, 320, 633, 654, 664, 840 |
| AluI | AGCT | 6 cut(s) | 275, 320, 633, 654, 664, 840 |
| Alw26I | GTCTC | 3 cut(s) | 163, 190, 438 |
| AlwI | GGATC | 1 cut(s) | 841 |
| AoxI | GGCC | 4 cut(s) | 52, 100, 711, 731 |
| ApeKI | GCWGC | 2 cut(s) | 5, 307 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 321 |
| AspA2I | CCTAGG | 1 cut(s) | 422 |
| AspS9I | GGNCC | 2 cut(s) | 731, 800 |
| AsuC2I | CCSGG | 1 cut(s) | 596 |
| AsuHPI | GGTGA | 3 cut(s) | 6, 112, 683 |
| AvaII | GGWCC | 1 cut(s) | 800 |
| AvrII | CCTAGG | 1 cut(s) | 422 |
| BbrPI | CACGTG | 1 cut(s) | 402 |
| BbvI | GCAGC | 1 cut(s) | 319 |
| BccI | CCATC | 3 cut(s) | 122, 328, 773 |
| BcnI | CCSGG | 1 cut(s) | 596 |
| BcoDI | GTCTC | 3 cut(s) | 163, 190, 438 |
| BfaI | CTAG | 5 cut(s) | 71, 263, 423, 837, 841 |
| BfrI | CTTAAG | 1 cut(s) | 326 |
| BfuAI | ACCTGC | 1 cut(s) | 570 |
| BisI | GCNGC | 2 cut(s) | 6, 308 |
| BlnI | CCTAGG | 1 cut(s) | 422 |
| BlsI | GCNGC | 2 cut(s) | 7, 309 |
| Bme1390I | CCNGG | 1 cut(s) | 596 |
| Bme18I | GGWCC | 1 cut(s) | 800 |
| BmgT120I | GGNCC | 2 cut(s) | 731, 800 |
| BmiI | GGNNCC | 2 cut(s) | 349, 732 |
| BmrFI | CCNGG | 1 cut(s) | 596 |
| BoxI | GACNNNNGTC | 1 cut(s) | 402 |
| BpmI | CTGGAG | 1 cut(s) | 789 |
| BpuEI | CTTGAG | 2 cut(s) | 33, 452 |
| BpuMI | CCSGG | 1 cut(s) | 596 |
| BsaAI | YACGTR | 2 cut(s) | 402, 679 |
| BsaJI | CCNNGG | 4 cut(s) | 81, 97, 422, 714 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 43, 720 |
| Bse118I | RCCGGY | 1 cut(s) | 733 |
| Bse1I | ACTGG | 1 cut(s) | 349 |
| Bse3DI | GCAATG | 1 cut(s) | 65 |
| BseDI | CCNNGG | 4 cut(s) | 81, 97, 422, 714 |
| BseGI | GGATG | 2 cut(s) | 144, 192 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 43, 720 |
| BseMI | GCAATG | 1 cut(s) | 65 |
| BseMII | CTCAG | 4 cut(s) | 174, 195, 201, 492 |
| BseNI | ACTGG | 1 cut(s) | 349 |
| BseXI | GCAGC | 1 cut(s) | 319 |
| BseYI | CCCAGC | 1 cut(s) | 633 |
| BshFI | GGCC | 4 cut(s) | 54, 102, 713, 733 |
| BsiSI | CCGG | 2 cut(s) | 595, 734 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 43, 720 |
| BsmAI | GTCTC | 3 cut(s) | 163, 190, 438 |
| BsnI | GGCC | 4 cut(s) | 54, 102, 713, 733 |
| Bsp143I | GATC | 1 cut(s) | 833 |
| BspACI | CCGC | 2 cut(s) | 352, 798 |
| BspANI | GGCC | 4 cut(s) | 54, 102, 713, 733 |
| BspCNI | CTCAG | 4 cut(s) | 173, 194, 200, 493 |
| BspLI | GGNNCC | 2 cut(s) | 349, 732 |
| BspMI | ACCTGC | 1 cut(s) | 570 |
| BspPI | GGATC | 1 cut(s) | 841 |
| BspQI | GCTCTTC | 1 cut(s) | 327 |
| BspTI | CTTAAG | 1 cut(s) | 326 |
| BsrDI | GCAATG | 1 cut(s) | 65 |
| BsrFI | RCCGGY | 1 cut(s) | 733 |
| BsrI | ACTGG | 1 cut(s) | 349 |
| BssAI | RCCGGY | 1 cut(s) | 733 |
| BssECI | CCNNGG | 4 cut(s) | 81, 97, 422, 714 |
| BssMI | GATC | 1 cut(s) | 833 |
| BssT1I | CCWWGG | 3 cut(s) | 81, 422, 714 |
| Bst4CI | ACNGT | 1 cut(s) | 141 |
| Bst6I | CTCTTC | 2 cut(s) | 66, 327 |
| BstAFI | CTTAAG | 1 cut(s) | 326 |
| BstBAI | YACGTR | 2 cut(s) | 402, 679 |
| BstDEI | CTNAG | 4 cut(s) | 160, 181, 187, 501 |
| BstDSI | CCRYGG | 1 cut(s) | 97 |
| BstF5I | GGATG | 2 cut(s) | 144, 192 |
| BstKTI | GATC | 1 cut(s) | 836 |
| BstMAI | GTCTC | 3 cut(s) | 163, 190, 438 |
| BstMBI | GATC | 1 cut(s) | 833 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 739, 823 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 402 |
| BstSCI | CCNGG | 1 cut(s) | 594 |
| BstV1I | GCAGC | 1 cut(s) | 319 |
| BstX2I | RGATCY | 1 cut(s) | 833 |
| BstYI | RGATCY | 1 cut(s) | 833 |
| BsuRI | GGCC | 4 cut(s) | 54, 102, 713, 733 |
| BtgI | CCRYGG | 1 cut(s) | 97 |
| BtsCI | GGATG | 2 cut(s) | 144, 192 |
| BtsI | GCAGTG | 1 cut(s) | 237 |
| BtsIMutI | CAGTG | 1 cut(s) | 237 |
| BveI | ACCTGC | 1 cut(s) | 570 |
| Cfr10I | RCCGGY | 1 cut(s) | 733 |
| Cfr13I | GGNCC | 2 cut(s) | 731, 800 |
| CseI | GACGC | 1 cut(s) | 762 |
| Csp6I | GTAC | 2 cut(s) | 676, 700 |
| CviAII | CATG | 7 cut(s) | 23, 43, 301, 437, 457, 486, 720 |
| CviQI | GTAC | 2 cut(s) | 676, 700 |
| DdeI | CTNAG | 4 cut(s) | 160, 181, 187, 501 |
| DpnI | GATC | 1 cut(s) | 835 |
| DpnII | GATC | 1 cut(s) | 833 |
| Eam1104I | CTCTTC | 2 cut(s) | 66, 327 |
| EarI | CTCTTC | 2 cut(s) | 66, 327 |
| Eco130I | CCWWGG | 3 cut(s) | 81, 422, 714 |
| Eco47I | GGWCC | 1 cut(s) | 800 |
| Eco72I | CACGTG | 1 cut(s) | 402 |
| EcoT14I | CCWWGG | 3 cut(s) | 81, 422, 714 |
| ErhI | CCWWGG | 3 cut(s) | 81, 422, 714 |
| FaeI | CATG | 7 cut(s) | 26, 46, 304, 440, 460, 489, 723 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 309, 341 |
| FatI | CATG | 7 cut(s) | 22, 42, 300, 436, 456, 485, 719 |
| FauI | CCCGC | 1 cut(s) | 359 |
| Fnu4HI | GCNGC | 2 cut(s) | 6, 308 |
| FokI | GGATG | 2 cut(s) | 131, 179 |
| Fsp4HI | GCNGC | 2 cut(s) | 6, 308 |
| FspBI | CTAG | 5 cut(s) | 71, 263, 423, 837, 841 |
| GluI | GCNGC | 2 cut(s) | 6, 308 |
| GsaI | CCCAGC | 1 cut(s) | 637 |
| GsuI | CTGGAG | 1 cut(s) | 789 |
| HaeIII | GGCC | 4 cut(s) | 54, 102, 713, 733 |
| HapII | CCGG | 2 cut(s) | 595, 734 |
| HgaI | GACGC | 1 cut(s) | 762 |
| Hin1II | CATG | 7 cut(s) | 26, 46, 304, 440, 460, 489, 723 |
| HinfI | GANTC | 3 cut(s) | 391, 463, 787 |
| HpaII | CCGG | 2 cut(s) | 595, 734 |
| HphI | GGTGA | 3 cut(s) | 6, 112, 683 |
| Hpy188I | TCNGA | 6 cut(s) | 163, 373, 481, 502, 559, 778 |
| Hpy188III | TCNNGA | 5 cut(s) | 212, 395, 659, 758, 768 |
| Hpy99I | CGWCG | 1 cut(s) | 499 |
| HpyAV | CCTTC | 4 cut(s) | 261, 289, 662, 686 |
| HpyCH4III | ACNGT | 1 cut(s) | 141 |
| HpyCH4IV | ACGT | 4 cut(s) | 401, 494, 510, 678 |
| HpyCH4V | TGCA | 2 cut(s) | 489, 686 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 739, 823 |
| HpyF3I | CTNAG | 4 cut(s) | 160, 181, 187, 501 |
| HpySE526I | ACGT | 4 cut(s) | 401, 494, 510, 678 |
| Hsp92II | CATG | 7 cut(s) | 26, 46, 304, 440, 460, 489, 723 |
| Kzo9I | GATC | 1 cut(s) | 833 |
| LguI | GCTCTTC | 1 cut(s) | 327 |
| LmnI | GCTCC | 1 cut(s) | 770 |
| LpnPI | CCDG | 9 cut(s) | 225, 330, 575, 591, 608, 619, 747, 753, 803 |
| Lsp1109I | GCAGC | 1 cut(s) | 319 |
| MaeI | CTAG | 5 cut(s) | 71, 263, 423, 837, 841 |
| MaeII | ACGT | 4 cut(s) | 401, 494, 510, 678 |
| MaeIII | GTNAC | 5 cut(s) | 109, 450, 519, 572, 679 |
| MalI | GATC | 1 cut(s) | 835 |
| MboI | GATC | 1 cut(s) | 833 |
| MboII | GAAGA | 5 cut(s) | 25, 53, 239, 314, 370 |
| MfeI | CAATTG | 1 cut(s) | 204 |
| MflI | RGATCY | 1 cut(s) | 833 |
| MluCI | AATT | 4 cut(s) | 204, 357, 475, 791 |
| MlyI | GAGTC | 2 cut(s) | 385, 796 |
| MmeI | TCCRAC | 1 cut(s) | 504 |
| MnlI | CCTC | 7 cut(s) | 27, 113, 392, 601, 607, 703, 823 |
| MroXI | GAANNNNTTC | 1 cut(s) | 321 |
| MseI | TTAA | 3 cut(s) | 131, 327, 414 |
| MspCI | CTTAAG | 1 cut(s) | 326 |
| MspI | CCGG | 2 cut(s) | 595, 734 |
| MspR9I | CCNGG | 1 cut(s) | 596 |
| MunI | CAATTG | 1 cut(s) | 204 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 739, 823 |
| NciI | CCSGG | 1 cut(s) | 596 |
| NdeII | GATC | 1 cut(s) | 833 |
| NlaIII | CATG | 7 cut(s) | 26, 46, 304, 440, 460, 489, 723 |
| NlaIV | GGNNCC | 2 cut(s) | 349, 732 |
| NmuCI | GTSAC | 2 cut(s) | 572, 679 |
| PciSI | GCTCTTC | 1 cut(s) | 327 |
| PdmI | GAANNNNTTC | 1 cut(s) | 321 |
| PfeI | GAWTC | 1 cut(s) | 463 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 720 |
| PkrI | GCNGC | 2 cut(s) | 7, 309 |
| PleI | GAGTC | 2 cut(s) | 385, 795 |
| PmaCI | CACGTG | 1 cut(s) | 402 |
| PmlI | CACGTG | 1 cut(s) | 402 |
| PpsI | GAGTC | 2 cut(s) | 385, 795 |
| Ppu21I | YACGTR | 2 cut(s) | 402, 679 |
| PshAI | GACNNNNGTC | 1 cut(s) | 402 |
| PspCI | CACGTG | 1 cut(s) | 402 |
| PspFI | CCCAGC | 1 cut(s) | 633 |
| PspN4I | GGNNCC | 2 cut(s) | 349, 732 |
| PspPI | GGNCC | 2 cut(s) | 731, 800 |
| PsuI | RGATCY | 1 cut(s) | 833 |
| RsaI | GTAC | 2 cut(s) | 677, 701 |
| RsaNI | GTAC | 2 cut(s) | 676, 700 |
| SapI | GCTCTTC | 1 cut(s) | 327 |
| SaqAI | TTAA | 3 cut(s) | 131, 327, 414 |
| SatI | GCNGC | 2 cut(s) | 6, 308 |
| Sau3AI | GATC | 1 cut(s) | 833 |
| Sau96I | GGNCC | 2 cut(s) | 731, 800 |
| SchI | GAGTC | 2 cut(s) | 385, 796 |
| ScrFI | CCNGG | 1 cut(s) | 596 |
| SinI | GGWCC | 1 cut(s) | 800 |
| SmlI | CTYRAG | 3 cut(s) | 48, 326, 467 |
| SmoI | CTYRAG | 3 cut(s) | 48, 326, 467 |
| Sse9I | AATT | 4 cut(s) | 204, 357, 475, 791 |
| SsiI | CCGC | 2 cut(s) | 352, 798 |
| SspMI | CTAG | 5 cut(s) | 71, 263, 423, 837, 841 |
| StyD4I | CCNGG | 1 cut(s) | 594 |
| StyI | CCWWGG | 3 cut(s) | 81, 422, 714 |
| TaaI | ACNGT | 1 cut(s) | 141 |
| TaiI | ACGT | 4 cut(s) | 404, 497, 513, 681 |
| TaqI | TCGA | 3 cut(s) | 339, 396, 810 |
| TasI | AATT | 4 cut(s) | 204, 357, 475, 791 |
| TatI | WGTACW | 1 cut(s) | 699 |
| TfiI | GAWTC | 1 cut(s) | 463 |
| Tru1I | TTAA | 3 cut(s) | 131, 327, 414 |
| Tru9I | TTAA | 3 cut(s) | 131, 327, 414 |
| TscAI | CASTG | 1 cut(s) | 244 |
| TseFI | GTSAC | 2 cut(s) | 572, 679 |
| TseI | GCWGC | 2 cut(s) | 5, 307 |
| Tsp45I | GTSAC | 2 cut(s) | 572, 679 |
| TspDTI | ATGAA | 4 cut(s) | 31, 133, 271, 317 |
| TspGWI | ACGGA | 1 cut(s) | 86 |
| TspRI | CASTG | 1 cut(s) | 244 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 720 |
| Vha464I | CTTAAG | 1 cut(s) | 326 |
| VpaK11BI | GGWCC | 1 cut(s) | 800 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 810 |
| XmaJI | CCTAGG | 1 cut(s) | 422 |
| XmnI | GAANNNNTTC | 1 cut(s) | 321 |
| XspI | CTAG | 5 cut(s) | 71, 263, 423, 837, 841 |